Wall clock time and date at job start Tue Mar 31 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47001 * 2 1 4 4 N 1.46898 * 109.46999 * 119.99716 * 2 1 3 5 5 C 1.46849 * 110.99323 * 303.36496 * 4 2 1 6 6 C 1.53033 * 109.51529 * 185.85081 * 5 4 2 7 7 C 1.53120 * 109.27897 * 300.81239 * 6 5 4 8 8 C 1.53123 * 109.16032 * 57.65698 * 7 6 5 9 9 C 1.46848 * 111.00260 * 67.56636 * 4 2 1 10 10 H 1.09001 * 109.46660 * 294.16706 * 9 4 2 11 11 C 1.53003 * 109.45935 * 54.14372 * 9 4 2 12 12 N 1.46498 * 109.46949 * 186.25189 * 11 9 4 13 13 C 1.36940 * 119.99843 * 266.77879 * 12 11 9 14 14 H 1.07994 * 120.00223 * 16.02628 * 13 12 11 15 15 C 1.38820 * 119.99728 * 196.03032 * 13 12 11 16 16 N 1.31620 * 119.99953 * 15.08218 * 15 13 12 17 17 Si 1.86802 * 119.99651 * 195.07957 * 15 13 12 18 18 H 1.48495 * 109.47279 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46856 * 120.00243 * 17 15 13 20 20 H 1.48504 * 109.47069 * 239.99851 * 17 15 13 21 21 C 1.46501 * 120.00171 * 86.78213 * 12 11 9 22 22 C 1.50697 * 109.47289 * 83.45307 * 21 12 11 23 23 O 1.20825 * 119.99951 * 359.97438 * 22 21 12 24 24 O 1.34230 * 119.99719 * 180.02562 * 22 21 12 25 25 H 1.08996 * 109.47476 * 300.00198 * 1 2 3 26 26 H 1.08998 * 109.46842 * 60.00339 * 1 2 3 27 27 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47127 * 239.99386 * 2 1 3 29 29 H 1.09002 * 109.46754 * 301.35718 * 3 2 1 30 30 H 1.08995 * 109.47021 * 61.35768 * 3 2 1 31 31 H 1.09005 * 109.46879 * 181.36298 * 3 2 1 32 32 H 1.09004 * 109.47172 * 65.83341 * 5 4 2 33 33 H 1.09002 * 109.45110 * 305.85234 * 5 4 2 34 34 H 1.09005 * 109.50572 * 180.87695 * 6 5 4 35 35 H 1.08998 * 109.53977 * 60.77841 * 6 5 4 36 36 H 1.08999 * 109.52832 * 297.75124 * 7 6 5 37 37 H 1.09004 * 109.57543 * 177.59396 * 7 6 5 38 38 H 1.08991 * 109.50345 * 182.40580 * 8 7 6 39 39 H 1.08999 * 109.50204 * 62.28288 * 8 7 6 40 40 H 1.08999 * 109.47144 * 66.25082 * 11 9 4 41 41 H 1.09000 * 109.47242 * 306.25242 * 11 9 4 42 42 H 0.97001 * 119.99617 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.47140 * 203.45553 * 21 12 11 44 44 H 1.08996 * 109.46858 * 323.44870 * 21 12 11 45 45 H 0.96700 * 116.99990 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4841 -0.0744 2.4192 6 6 2.1265 -0.7249 3.6464 7 6 1.8259 -2.2263 3.6383 8 6 2.3508 -2.8370 2.3359 9 6 1.7018 -2.1251 1.1467 10 1 0.6209 -2.2592 1.1889 11 6 2.2385 -2.7186 -0.1574 12 7 1.7941 -4.1091 -0.2804 13 6 2.5934 -5.1258 0.1698 14 1 3.4148 -4.9117 0.8374 15 6 2.3479 -6.4316 -0.2321 16 7 1.5568 -6.6669 -1.2574 17 14 3.1403 -7.8549 0.6822 18 1 3.9785 -7.3271 1.7885 19 1 2.0823 -8.7352 1.2399 20 1 3.9893 -8.6338 -0.2547 21 6 0.4945 -4.4120 -0.8851 22 6 0.6329 -4.4403 -2.3855 23 8 1.7068 -4.2288 -2.8972 24 8 -0.4371 -4.6996 -3.1533 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6569 1.9633 -0.8776 30 1 1.6967 1.9492 0.9019 31 1 3.1298 1.4426 -0.0244 32 1 0.4042 -0.2182 2.4553 33 1 1.7085 0.9923 2.4142 34 1 1.7174 -0.2768 4.5519 35 1 3.2050 -0.5696 3.6187 36 1 0.7493 -2.3827 3.7060 37 1 2.3170 -2.7017 4.4874 38 1 2.1019 -3.8976 2.3051 39 1 3.4328 -2.7148 2.2869 40 1 3.3280 -2.6846 -0.1508 41 1 1.8622 -2.1408 -1.0016 42 1 1.3849 -7.5794 -1.5380 43 1 0.1479 -5.3838 -0.5338 44 1 -0.2259 -3.6450 -0.6011 45 1 -0.2993 -4.7067 -4.1104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609706891.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:27 Heat of formation + Delta-G solvation = -86.550584 kcal Electronic energy + Delta-G solvation = -24839.357077 eV Core-core repulsion = 21470.625274 eV Total energy + Delta-G solvation = -3368.731803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90344 -40.39255 -37.52411 -36.32892 -35.86997 -33.81865 -31.84197 -30.99936 -29.17858 -28.05276 -27.54681 -25.08137 -24.47677 -22.66565 -21.57505 -21.34342 -19.73833 -18.80041 -18.50887 -17.43998 -17.08469 -16.75483 -16.10044 -15.98661 -15.65064 -15.24705 -15.18452 -14.90113 -14.58012 -14.37126 -14.03998 -13.73744 -13.47867 -13.25780 -13.12644 -12.89596 -12.77943 -12.60651 -12.52517 -12.31219 -12.21348 -12.05320 -12.04572 -11.89703 -11.80438 -11.53926 -11.48594 -11.18973 -10.91947 -10.87867 -10.54906 -9.06679 -8.91997 -7.91863 -5.28243 1.47459 1.50050 1.59363 1.97402 2.45828 2.75028 3.00791 3.32490 3.66239 3.94138 4.02912 4.05148 4.15117 4.29396 4.37579 4.45389 4.51102 4.55725 4.61444 4.72688 4.79685 4.84778 4.87421 4.93033 5.00424 5.03988 5.11375 5.13575 5.19358 5.24174 5.25160 5.27033 5.37639 5.41915 5.47166 5.56263 5.63555 5.66494 6.10135 6.23073 6.36554 6.41487 7.05667 7.57833 7.80338 8.18089 9.16530 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.015547 B = 0.006837 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.605833 B = 4094.387029 C = 5430.977460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.063 3.937 3 C -0.133 4.133 4 N -0.532 5.532 5 C 0.053 3.947 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.101 4.101 9 C 0.087 3.913 10 H 0.028 0.972 11 C 0.160 3.840 12 N -0.576 5.576 13 C -0.238 4.238 14 H 0.082 0.918 15 C -0.056 4.056 16 N -0.940 5.940 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.287 1.287 20 H -0.304 1.304 21 C 0.190 3.810 22 C 0.482 3.518 23 O -0.563 6.563 24 O -0.533 6.533 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.249 0.751 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 13.847 6.892 16.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.045 4.045 3 C -0.191 4.191 4 N -0.258 5.258 5 C -0.074 4.074 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.139 4.139 9 C -0.023 4.023 10 H 0.046 0.954 11 C 0.034 3.966 12 N -0.296 5.296 13 C -0.368 4.368 14 H 0.100 0.900 15 C -0.249 4.249 16 N -0.588 5.588 17 Si 0.800 3.200 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.232 1.232 21 C 0.060 3.940 22 C 0.324 3.676 23 O -0.453 6.453 24 O -0.344 6.344 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.125 0.875 44 H 0.088 0.912 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -3.518 13.823 7.172 15.965 hybrid contribution -0.199 -1.516 -1.029 1.843 sum -3.717 12.307 6.143 14.248 Atomic orbital electron populations 1.22376 0.97134 1.01213 1.02885 1.21833 0.93247 0.96149 0.93264 1.21780 1.01306 0.93596 1.02383 1.62133 1.59547 1.01689 1.02389 1.22193 0.96650 0.99297 0.89303 1.21565 1.01238 0.94640 0.97333 1.21572 1.00429 0.96425 0.96988 1.21493 0.99368 0.99385 0.93679 1.21909 0.96765 0.87242 0.96406 0.95367 1.20916 0.97224 0.83872 0.94554 1.44013 1.17064 1.01857 1.66675 1.19624 1.10452 0.86409 1.20320 0.90017 1.25535 1.01323 1.00169 0.97909 1.69941 1.42991 1.19172 1.26712 0.85138 0.77513 0.79458 0.77916 1.19044 1.21392 1.23199 1.20372 0.87737 1.02245 0.83610 1.25560 0.80516 0.68743 0.92734 1.90486 1.30061 1.48804 1.75902 1.84569 1.41460 1.84321 1.24066 0.91345 0.91395 0.94372 0.91716 0.91427 0.91492 0.92623 0.94977 0.89239 0.89880 0.91836 0.92712 0.91520 0.92151 0.93276 0.94534 0.94598 0.94175 0.87549 0.91245 0.74169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.24 8.48 71.98 0.61 -3.63 16 2 C 0.06 1.66 2.62 44.92 0.12 1.78 16 3 C -0.13 -2.72 9.10 71.98 0.65 -2.07 16 4 N -0.53 -15.11 4.46 -846.02 -3.77 -18.88 16 5 C 0.05 1.21 4.59 86.32 0.40 1.60 16 6 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 7 C -0.12 -3.05 6.00 30.68 0.18 -2.87 16 8 C -0.10 -3.43 4.76 30.65 0.15 -3.28 16 9 C 0.09 2.97 1.73 44.94 0.08 3.04 16 10 H 0.03 1.02 6.80 -2.39 -0.02 1.00 16 11 C 0.16 6.72 4.88 86.38 0.42 7.14 16 12 N -0.58 -27.78 1.89 -706.35 -1.33 -29.11 16 13 C -0.24 -12.54 8.16 84.03 0.69 -11.86 16 14 H 0.08 4.23 7.36 -2.91 -0.02 4.21 16 15 C -0.06 -3.03 5.05 84.86 0.43 -2.60 16 16 N -0.94 -53.43 9.07 21.65 0.20 -53.23 16 17 Si 0.97 44.64 29.58 68.60 2.03 46.67 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 C 0.19 8.90 5.50 85.63 0.47 9.37 16 22 C 0.48 23.43 6.61 71.23 0.47 23.90 16 23 O -0.56 -31.40 17.06 21.97 0.37 -31.03 16 24 O -0.53 -21.50 13.42 -51.41 -0.69 -22.19 16 25 H 0.07 1.43 6.48 -2.39 -0.02 1.42 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.06 6.73 -2.39 -0.02 1.04 16 28 H 0.06 2.04 5.65 -2.39 -0.01 2.02 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.17 6.29 -2.39 -0.02 1.16 16 31 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.03 0.74 6.59 -2.38 -0.02 0.72 16 33 H 0.09 1.72 6.09 -2.39 -0.01 1.71 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.06 2.37 6.48 -2.39 -0.02 2.35 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 1.66 8.01 -2.39 -0.02 1.64 16 41 H 0.04 1.52 5.76 -2.39 -0.01 1.51 16 42 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 43 H 0.11 5.47 6.05 -2.39 -0.01 5.45 16 44 H 0.07 2.82 8.12 -2.39 -0.02 2.80 16 45 H 0.40 12.66 9.10 -74.06 -0.67 11.99 16 Total: -1.00 -64.85 339.34 1.97 -62.88 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.31 Total: 26.60 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 4.85 Total: 18.31 kcal Atomic # 7 Polarization: -96.32 SS G_CDS: -4.91 Total: -101.23 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.32 Total: -53.22 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -64.85 1.97 -62.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609706891.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.674 kcal (2) G-P(sol) polarization free energy of solvation -64.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds