Wall clock time and date at job start Tue Mar 31 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47261 * 2 1 4 4 C 1.42898 * 113.99921 * 184.64242 * 3 2 1 5 5 H 1.09001 * 109.47329 * 329.93485 * 4 3 2 6 6 C 1.50697 * 109.47366 * 89.93802 * 4 3 2 7 7 O 1.21283 * 119.99765 * 4.99757 * 6 4 3 8 8 N 1.34772 * 120.00188 * 184.99922 * 6 4 3 9 9 C 1.46499 * 120.00119 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47415 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46976 * 295.00599 * 10 9 8 12 12 C 1.53000 * 109.47371 * 175.00060 * 10 9 8 13 13 C 1.53003 * 109.47115 * 174.99842 * 12 10 9 14 14 N 1.46497 * 109.46693 * 54.99989 * 10 9 8 15 15 C 1.36946 * 119.99692 * 204.99876 * 14 10 9 16 16 H 1.07996 * 119.99853 * 0.02562 * 15 14 10 17 17 C 1.38808 * 119.99672 * 179.97438 * 15 14 10 18 18 N 1.31620 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47051 * 120.00061 * 19 17 15 22 22 H 1.48492 * 109.47648 * 240.00252 * 19 17 15 23 23 C 1.53008 * 109.47053 * 209.93954 * 4 3 2 24 24 C 1.52995 * 117.50115 * 132.00397 * 23 4 3 25 25 C 1.52997 * 117.49933 * 63.34241 * 23 4 3 26 26 H 1.09001 * 109.46988 * 300.00104 * 1 2 3 27 27 H 1.09009 * 109.46728 * 59.99704 * 1 2 3 28 28 H 1.08996 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46988 * 239.99896 * 2 1 3 30 30 H 1.09000 * 109.46736 * 120.00020 * 2 1 3 31 31 H 0.97000 * 120.00217 * 0.02562 * 8 6 4 32 32 H 1.09006 * 109.47157 * 60.00198 * 9 8 6 33 33 H 1.09003 * 109.47210 * 300.00455 * 9 8 6 34 34 H 1.08999 * 109.47248 * 295.00434 * 12 10 9 35 35 H 1.09002 * 109.46860 * 55.00185 * 12 10 9 36 36 H 1.08991 * 109.46913 * 300.00459 * 13 12 10 37 37 H 1.09001 * 109.46557 * 60.00083 * 13 12 10 38 38 H 1.08999 * 109.46885 * 179.97438 * 13 12 10 39 39 H 0.96998 * 120.00734 * 25.00573 * 14 10 9 40 40 H 0.96995 * 120.00546 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.54718 * 277.67403 * 23 4 3 42 42 H 1.09005 * 117.49367 * 359.97438 * 24 23 4 43 43 H 1.08996 * 117.49827 * 145.01807 * 24 23 4 44 44 H 1.09000 * 117.50192 * 214.98040 * 25 23 4 45 45 H 1.09004 * 117.49996 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4269 1.4614 -0.1057 5 1 3.8965 0.5904 0.3513 6 6 3.8180 1.5384 -1.5590 7 8 2.9610 1.5907 -2.4156 8 7 5.1200 1.5490 -1.9068 9 6 5.5002 1.6233 -3.3196 10 6 7.0256 1.6194 -3.4383 11 1 7.4277 2.5247 -2.9834 12 6 7.4222 1.5711 -4.9152 13 6 8.9423 1.6929 -5.0393 14 7 7.5659 0.4451 -2.7489 15 6 8.8487 0.4626 -2.2695 16 1 9.4617 1.3422 -2.3994 17 6 9.3605 -0.6498 -1.6158 18 7 8.6132 -1.7216 -1.4571 19 14 11.1104 -0.6263 -0.9626 20 1 11.7350 0.6860 -1.2676 21 1 11.0928 -0.8358 0.5074 22 1 11.8943 -1.7100 -1.6077 23 6 3.8917 2.7284 0.6154 24 6 5.0721 2.5994 1.5802 25 6 3.6570 2.8085 2.1251 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8054 1.5068 -1.2217 32 1 5.1039 2.5408 -3.7548 33 1 5.0926 0.7634 -3.8513 34 1 7.0969 0.6251 -5.3480 35 1 6.9471 2.3961 -5.4461 36 1 9.2675 2.6389 -4.6064 37 1 9.4174 0.8680 -4.5083 38 1 9.2249 1.6581 -6.0914 39 1 7.0153 -0.3448 -2.6319 40 1 8.9709 -2.4991 -1.0006 41 1 3.8080 3.6524 0.0433 42 1 5.5172 1.6118 1.7016 43 1 5.7646 3.4387 1.6432 44 1 3.4192 3.7852 2.5464 45 1 3.1710 1.9587 2.6047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698601195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:48 Heat of formation + Delta-G solvation = -60.657781 kcal Electronic energy + Delta-G solvation = -23415.461367 eV Core-core repulsion = 20047.852360 eV Total energy + Delta-G solvation = -3367.609007 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.92892 -37.85230 -36.66136 -36.40516 -33.62175 -32.39156 -31.38617 -29.82716 -28.71495 -26.87269 -23.75418 -22.95459 -22.44186 -22.31034 -21.16100 -20.17466 -19.75153 -17.65501 -17.14883 -16.81542 -15.68121 -15.41805 -15.17495 -15.06848 -14.69127 -14.14128 -13.84453 -13.58660 -13.24745 -13.02626 -13.00562 -12.60703 -12.55135 -12.13871 -11.88148 -11.56187 -11.48358 -11.41278 -11.08159 -10.97759 -10.92053 -10.77071 -10.57032 -10.44332 -10.39425 -10.20928 -10.10472 -10.01528 -9.57141 -9.06586 -8.93726 -8.59577 -7.06645 -5.85283 -3.14269 2.89515 3.22616 3.36339 3.43302 3.45069 3.57532 4.15322 4.51091 4.63511 4.80486 4.91383 4.98321 5.08221 5.17975 5.26915 5.38881 5.41343 5.42658 5.51426 5.55975 5.63081 5.68203 5.85935 5.91116 5.92456 5.94982 5.96485 6.07041 6.09022 6.10798 6.15800 6.41519 6.53937 6.56676 6.59898 6.90609 7.01152 7.11860 7.22324 7.63896 7.97010 8.32182 8.59649 9.44304 9.99356 10.35404 11.36771 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.004676 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.443421 B = 5987.121466 C = 6727.848572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.107 3.893 5 H 0.086 0.914 6 C 0.491 3.509 7 O -0.541 6.541 8 N -0.707 5.707 9 C 0.114 3.886 10 C 0.163 3.837 11 H 0.054 0.946 12 C -0.134 4.134 13 C -0.146 4.146 14 N -0.721 5.721 15 C -0.235 4.235 16 H 0.074 0.926 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.152 4.152 24 C -0.168 4.168 25 C -0.162 4.162 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 6.752 4.320 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.272 6.272 4 C 0.045 3.955 5 H 0.104 0.896 6 C 0.275 3.725 7 O -0.419 6.419 8 N -0.360 5.360 9 C -0.010 4.010 10 C 0.053 3.947 11 H 0.072 0.928 12 C -0.175 4.175 13 C -0.203 4.203 14 N -0.364 5.364 15 C -0.366 4.366 16 H 0.092 0.908 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.220 1.220 23 C -0.170 4.170 24 C -0.205 4.205 25 C -0.199 4.199 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.247 0.753 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.130 0.870 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.388 6.985 3.780 13.076 hybrid contribution 1.376 -0.666 0.524 1.615 sum -9.012 6.319 4.304 11.818 Atomic orbital electron populations 1.21697 0.93631 1.02047 1.03033 1.22564 0.95784 0.83715 1.00160 1.87964 1.18896 1.26552 1.93769 1.21456 0.83508 0.98278 0.92249 0.89624 1.21121 0.82991 0.76896 0.91442 1.90666 1.49887 1.49691 1.51629 1.45977 1.07049 1.73351 1.09606 1.21666 0.96578 1.01244 0.81522 1.20563 0.89345 0.92532 0.92244 0.92816 1.22068 0.96929 1.00256 0.98217 1.21767 0.96316 1.02701 0.99561 1.42462 1.13737 1.13351 1.66805 1.19260 0.89669 0.99055 1.28648 0.90829 1.24716 0.98038 0.96363 1.01603 1.69666 1.35913 1.04466 1.47812 0.86206 0.84827 0.77286 0.78401 1.20534 1.21941 1.21954 1.22043 1.04236 0.98019 0.92743 1.23139 0.91093 1.04226 1.02021 1.22852 0.99064 1.03310 0.94714 0.92060 0.91661 0.91234 0.92994 0.93438 0.75286 0.91939 0.91970 0.92551 0.93852 0.94113 0.89691 0.94882 0.78153 0.93565 0.87034 0.87934 0.87918 0.88564 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.05 0.70 6.43 37.16 0.24 0.94 16 3 O -0.35 -5.36 9.48 -55.09 -0.52 -5.89 16 4 C 0.11 1.55 2.69 -27.88 -0.07 1.47 16 5 H 0.09 1.17 7.61 -51.93 -0.40 0.77 16 6 C 0.49 8.51 7.11 -10.99 -0.08 8.43 16 7 O -0.54 -11.15 16.51 -14.31 -0.24 -11.38 16 8 N -0.71 -11.87 5.35 -60.29 -0.32 -12.19 16 9 C 0.11 1.97 5.23 -4.04 -0.02 1.94 16 10 C 0.16 2.99 2.59 -67.93 -0.18 2.81 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.13 -2.30 5.61 -26.73 -0.15 -2.45 16 13 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 14 N -0.72 -16.11 4.51 -53.43 -0.24 -16.35 16 15 C -0.24 -5.84 7.75 -15.06 -0.12 -5.96 16 16 H 0.07 1.80 7.32 -52.49 -0.38 1.41 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 19 Si 0.90 21.10 29.55 -169.99 -5.02 16.07 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 23 C -0.15 -1.89 5.31 -90.62 -0.48 -2.38 16 24 C -0.17 -1.85 10.18 -26.70 -0.27 -2.12 16 25 C -0.16 -1.70 10.21 -26.70 -0.27 -1.97 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.41 6.89 8.14 -40.82 -0.33 6.56 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.77 5.99 -51.93 -0.31 1.46 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.38 9.44 7.80 -40.82 -0.32 9.12 16 40 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.11 1.43 8.13 -51.93 -0.42 1.01 16 42 H 0.10 1.17 8.07 -51.93 -0.42 0.75 16 43 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -29.40 371.29 -8.86 -38.26 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -8.05 Total: 14.50 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.78 Total: -3.09 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.16 Total: -54.08 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.76 Total: -17.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.40 -8.86 -38.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698601195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.397 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds