Wall clock time and date at job start Tue Mar 31 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47261 * 2 1 4 4 C 1.42898 * 113.99921 * 184.64242 * 3 2 1 5 5 H 1.09001 * 109.47329 * 329.93485 * 4 3 2 6 6 C 1.50697 * 109.47366 * 89.93802 * 4 3 2 7 7 O 1.21283 * 119.99765 * 4.99757 * 6 4 3 8 8 N 1.34772 * 120.00188 * 184.99922 * 6 4 3 9 9 C 1.46499 * 120.00119 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47415 * 180.02562 * 9 8 6 11 11 H 1.09004 * 109.46976 * 295.00599 * 10 9 8 12 12 C 1.53000 * 109.47371 * 175.00060 * 10 9 8 13 13 C 1.53003 * 109.47115 * 174.99842 * 12 10 9 14 14 N 1.46497 * 109.46693 * 54.99989 * 10 9 8 15 15 C 1.36946 * 119.99692 * 204.99876 * 14 10 9 16 16 H 1.07996 * 119.99853 * 0.02562 * 15 14 10 17 17 C 1.38808 * 119.99672 * 179.97438 * 15 14 10 18 18 N 1.31620 * 120.00540 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.47054 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47051 * 120.00061 * 19 17 15 22 22 H 1.48492 * 109.47648 * 240.00252 * 19 17 15 23 23 C 1.53008 * 109.47053 * 209.93954 * 4 3 2 24 24 C 1.52995 * 117.50115 * 132.00397 * 23 4 3 25 25 C 1.52997 * 117.49933 * 63.34241 * 23 4 3 26 26 H 1.09001 * 109.46988 * 300.00104 * 1 2 3 27 27 H 1.09009 * 109.46728 * 59.99704 * 1 2 3 28 28 H 1.08996 * 109.47432 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46988 * 239.99896 * 2 1 3 30 30 H 1.09000 * 109.46736 * 120.00020 * 2 1 3 31 31 H 0.97000 * 120.00217 * 0.02562 * 8 6 4 32 32 H 1.09006 * 109.47157 * 60.00198 * 9 8 6 33 33 H 1.09003 * 109.47210 * 300.00455 * 9 8 6 34 34 H 1.08999 * 109.47248 * 295.00434 * 12 10 9 35 35 H 1.09002 * 109.46860 * 55.00185 * 12 10 9 36 36 H 1.08991 * 109.46913 * 300.00459 * 13 12 10 37 37 H 1.09001 * 109.46557 * 60.00083 * 13 12 10 38 38 H 1.08999 * 109.46885 * 179.97438 * 13 12 10 39 39 H 0.96998 * 120.00734 * 25.00573 * 14 10 9 40 40 H 0.96995 * 120.00546 * 179.97438 * 18 17 15 41 41 H 1.08999 * 115.54718 * 277.67403 * 23 4 3 42 42 H 1.09005 * 117.49367 * 359.97438 * 24 23 4 43 43 H 1.08996 * 117.49827 * 145.01807 * 24 23 4 44 44 H 1.09000 * 117.50192 * 214.98040 * 25 23 4 45 45 H 1.09004 * 117.49996 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4269 1.4614 -0.1057 5 1 3.8965 0.5904 0.3513 6 6 3.8180 1.5384 -1.5590 7 8 2.9610 1.5907 -2.4156 8 7 5.1200 1.5490 -1.9068 9 6 5.5002 1.6233 -3.3196 10 6 7.0256 1.6194 -3.4383 11 1 7.4277 2.5247 -2.9834 12 6 7.4222 1.5711 -4.9152 13 6 8.9423 1.6929 -5.0393 14 7 7.5659 0.4451 -2.7489 15 6 8.8487 0.4626 -2.2695 16 1 9.4617 1.3422 -2.3994 17 6 9.3605 -0.6498 -1.6158 18 7 8.6132 -1.7216 -1.4571 19 14 11.1104 -0.6263 -0.9626 20 1 11.7350 0.6860 -1.2676 21 1 11.0928 -0.8358 0.5074 22 1 11.8943 -1.7100 -1.6077 23 6 3.8917 2.7284 0.6154 24 6 5.0721 2.5994 1.5802 25 6 3.6570 2.8085 2.1251 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8054 1.5068 -1.2217 32 1 5.1039 2.5408 -3.7548 33 1 5.0926 0.7634 -3.8513 34 1 7.0969 0.6251 -5.3480 35 1 6.9471 2.3961 -5.4461 36 1 9.2675 2.6389 -4.6064 37 1 9.4174 0.8680 -4.5083 38 1 9.2249 1.6581 -6.0914 39 1 7.0153 -0.3448 -2.6319 40 1 8.9709 -2.4991 -1.0006 41 1 3.8080 3.6524 0.0433 42 1 5.5172 1.6118 1.7016 43 1 5.7646 3.4387 1.6432 44 1 3.4192 3.7852 2.5464 45 1 3.1710 1.9587 2.6047 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698601195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:47 Heat of formation + Delta-G solvation = -78.320991 kcal Electronic energy + Delta-G solvation = -23416.227301 eV Core-core repulsion = 20047.852360 eV Total energy + Delta-G solvation = -3368.374941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21980 -39.10946 -38.09785 -37.48165 -35.19659 -34.12512 -32.36541 -31.50871 -30.14360 -28.20536 -25.53607 -24.17743 -23.69069 -23.16035 -22.26848 -21.62555 -21.11022 -19.30317 -18.59049 -18.05605 -17.06116 -16.70992 -16.58020 -16.15184 -16.04196 -15.74007 -15.20967 -15.06966 -14.65571 -14.51498 -14.20427 -13.97083 -13.74469 -13.40816 -12.98701 -12.92378 -12.80488 -12.77049 -12.43073 -12.38205 -12.34795 -12.10532 -12.04505 -11.86959 -11.67210 -11.60838 -11.33821 -11.32649 -11.12102 -10.90791 -10.27804 -10.03328 -8.96502 -7.86370 -5.13378 1.50392 1.53256 1.53726 1.60597 2.05587 2.45806 2.61162 3.16588 3.47642 3.58084 3.77336 3.83826 3.90551 3.96169 4.02395 4.14141 4.18722 4.26915 4.37588 4.42826 4.48329 4.52310 4.56562 4.73780 4.80990 4.83056 4.87745 4.99641 5.02631 5.09343 5.13582 5.15754 5.21326 5.22927 5.27137 5.47106 5.57116 5.63569 5.72574 6.01747 6.33916 6.58563 7.21040 7.42089 8.12767 8.38392 9.36887 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.014761 B = 0.004676 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.443421 B = 5987.121466 C = 6727.848572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.046 3.954 3 O -0.368 6.368 4 C 0.111 3.889 5 H 0.093 0.907 6 C 0.489 3.511 7 O -0.578 6.578 8 N -0.702 5.702 9 C 0.121 3.879 10 C 0.166 3.834 11 H 0.061 0.939 12 C -0.130 4.130 13 C -0.142 4.142 14 N -0.727 5.727 15 C -0.214 4.214 16 H 0.081 0.919 17 C -0.070 4.070 18 N -0.968 5.968 19 Si 0.957 3.043 20 H -0.266 1.266 21 H -0.297 1.297 22 H -0.304 1.304 23 C -0.168 4.168 24 C -0.163 4.163 25 C -0.147 4.147 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.412 0.588 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.372 0.628 40 H 0.246 0.754 41 H 0.106 0.894 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.742 8.302 4.904 13.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 O -0.286 6.286 4 C 0.050 3.950 5 H 0.110 0.890 6 C 0.275 3.725 7 O -0.458 6.458 8 N -0.354 5.354 9 C -0.003 4.003 10 C 0.058 3.942 11 H 0.079 0.921 12 C -0.171 4.171 13 C -0.200 4.200 14 N -0.367 5.367 15 C -0.345 4.345 16 H 0.099 0.901 17 C -0.262 4.262 18 N -0.620 5.620 19 Si 0.788 3.212 20 H -0.190 1.190 21 H -0.225 1.225 22 H -0.232 1.232 23 C -0.186 4.186 24 C -0.200 4.200 25 C -0.184 4.184 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.204 0.796 40 H 0.055 0.945 41 H 0.124 0.876 42 H 0.115 0.885 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.301 8.587 4.351 14.099 hybrid contribution 1.308 -1.089 0.262 1.722 sum -8.993 7.498 4.613 12.585 Atomic orbital electron populations 1.21707 0.91926 1.03449 1.02843 1.22765 0.97278 0.82898 1.00052 1.87955 1.19192 1.27841 1.93603 1.21479 0.83501 0.99676 0.90367 0.88952 1.21701 0.82541 0.75750 0.92530 1.90640 1.50736 1.51507 1.52955 1.45959 1.07086 1.72915 1.09478 1.21578 0.95662 1.01298 0.81806 1.20692 0.89798 0.91012 0.92724 0.92143 1.21996 0.96973 1.00926 0.97194 1.21692 0.96127 1.01645 1.00498 1.42573 1.12966 1.14076 1.67111 1.19538 0.90286 0.98546 1.26170 0.90124 1.25325 1.01036 0.96561 1.03310 1.69805 1.37318 1.05052 1.49822 0.85306 0.81393 0.77272 0.77222 1.19036 1.22498 1.23217 1.21979 1.06105 0.96719 0.93834 1.23183 0.91380 1.04405 1.01033 1.22959 0.98257 1.04421 0.92717 0.90948 0.93067 0.89075 0.95079 0.91502 0.75154 0.90507 0.93375 0.93706 0.90801 0.93111 0.93192 0.92904 0.79631 0.94454 0.87565 0.88478 0.86801 0.86842 0.88203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 10.28 71.98 0.74 -2.16 16 2 C 0.05 1.18 6.43 71.98 0.46 1.64 16 3 O -0.37 -10.99 9.48 -129.99 -1.23 -12.23 16 4 C 0.11 3.18 2.69 29.85 0.08 3.26 16 5 H 0.09 2.49 7.61 -2.39 -0.02 2.47 16 6 C 0.49 16.98 7.11 87.66 0.62 17.61 16 7 O -0.58 -24.13 16.51 15.95 0.26 -23.86 16 8 N -0.70 -23.38 5.35 -463.06 -2.48 -25.86 16 9 C 0.12 4.07 5.23 86.38 0.45 4.52 16 10 C 0.17 5.86 2.59 44.99 0.12 5.98 16 11 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 12 C -0.13 -4.22 5.61 30.60 0.17 -4.05 16 13 C -0.14 -4.72 9.18 71.98 0.66 -4.06 16 14 N -0.73 -32.22 4.51 -322.94 -1.46 -33.68 16 15 C -0.21 -10.45 7.75 84.03 0.65 -9.80 16 16 H 0.08 3.80 7.32 -2.91 -0.02 3.78 16 17 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 18 N -0.97 -55.57 13.06 21.65 0.28 -55.29 16 19 Si 0.96 43.43 29.55 68.60 2.03 45.46 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 21 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 23 C -0.17 -3.99 5.31 -10.79 -0.06 -4.05 16 24 C -0.16 -3.30 10.18 30.62 0.31 -2.99 16 25 C -0.15 -2.75 10.21 30.62 0.31 -2.43 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.03 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.41 13.65 8.14 -92.71 -0.75 12.90 16 32 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 2.01 5.99 -2.39 -0.01 2.00 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.37 18.47 7.80 -92.71 -0.72 17.75 16 40 H 0.25 13.98 8.31 -92.71 -0.77 13.20 16 41 H 0.11 2.63 8.13 -2.39 -0.02 2.61 16 42 H 0.10 2.09 8.07 -2.38 -0.02 2.07 16 43 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -62.97 371.29 1.89 -61.08 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.51 Total: 44.15 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.99 Total: 0.23 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -3.65 Total: -114.83 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -0.97 Total: -36.09 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -62.97 1.89 -61.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698601195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.242 kcal (2) G-P(sol) polarization free energy of solvation -62.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds