Wall clock time and date at job start Tue Mar 31 2020 06:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00136 * 2 1 4 4 H 1.09000 * 109.46961 * 29.99804 * 3 2 1 5 5 C 1.50699 * 109.47540 * 150.00094 * 3 2 1 6 6 O 1.21278 * 119.99705 * 4.99743 * 5 3 2 7 7 N 1.34770 * 119.99973 * 185.00108 * 5 3 2 8 8 C 1.46505 * 119.99650 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46854 * 179.97438 * 8 7 5 10 10 H 1.08993 * 109.47455 * 305.00463 * 9 8 7 11 11 C 1.53008 * 109.46884 * 65.00484 * 9 8 7 12 12 C 1.52994 * 109.47093 * 185.00003 * 9 8 7 13 13 N 1.46504 * 109.47503 * 175.00391 * 12 9 8 14 14 C 1.36931 * 120.00420 * 180.02562 * 13 12 9 15 15 H 1.08005 * 120.00010 * 359.97438 * 14 13 12 16 16 C 1.38813 * 120.00337 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99575 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00365 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46950 * 59.99767 * 18 16 14 20 20 H 1.48499 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46957 * 300.00061 * 18 16 14 22 22 C 1.53002 * 109.47083 * 270.00286 * 3 2 1 23 23 C 1.53781 * 113.61609 * 59.99482 * 22 3 2 24 24 C 1.53781 * 87.08070 * 139.98229 * 23 22 3 25 25 C 1.53786 * 87.17350 * 334.52830 * 24 23 22 26 26 H 1.09002 * 109.46871 * 299.99698 * 1 2 3 27 27 H 1.09004 * 109.47294 * 60.00373 * 1 2 3 28 28 H 1.09005 * 109.46840 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00225 * 359.97438 * 7 5 3 30 30 H 1.08993 * 109.47543 * 299.99980 * 8 7 5 31 31 H 1.09000 * 109.47009 * 60.00647 * 8 7 5 32 32 H 1.08993 * 109.47092 * 59.99757 * 11 9 8 33 33 H 1.08993 * 109.46924 * 179.97438 * 11 9 8 34 34 H 1.08999 * 109.46974 * 300.00012 * 11 9 8 35 35 H 1.09004 * 109.47698 * 295.00268 * 12 9 8 36 36 H 1.09001 * 109.47246 * 55.00661 * 12 9 8 37 37 H 0.96999 * 119.99485 * 0.02562 * 13 12 9 38 38 H 0.97002 * 119.99753 * 180.02562 * 17 16 14 39 39 H 1.08996 * 112.84723 * 288.80302 * 22 3 2 40 40 H 1.08999 * 113.61181 * 25.43284 * 23 22 3 41 41 H 1.08998 * 113.61680 * 254.52836 * 23 22 3 42 42 H 1.09002 * 113.61445 * 89.11830 * 24 23 22 43 43 H 1.09002 * 113.61408 * 219.93560 * 24 23 22 44 44 H 1.08992 * 113.61675 * 140.02412 * 25 24 23 45 45 H 1.09000 * 113.60973 * 270.92699 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3386 1.2640 0.7104 6 8 3.7897 0.2046 1.0914 7 7 4.0254 2.4041 0.9223 8 6 5.3165 2.3637 1.6134 9 6 5.8811 3.7816 1.7225 10 1 5.9330 4.2294 0.7302 11 6 4.9700 4.6259 2.6159 12 6 7.2836 3.7266 2.3313 13 7 7.8712 5.0686 2.3261 14 6 9.1309 5.2665 2.8252 15 1 9.6911 4.4332 3.2231 16 6 9.6879 6.5380 2.8197 17 7 9.0054 7.5533 2.3343 18 14 11.4060 6.8080 3.5012 19 1 12.3774 5.9875 2.7342 20 1 11.7667 8.2434 3.3800 21 1 11.4400 6.4076 4.9308 22 6 2.2176 1.7714 -1.4425 23 6 0.9162 1.8484 -2.2582 24 6 1.4685 3.1471 -2.8691 25 6 2.3078 3.3022 -1.5898 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.6648 3.2513 0.6173 30 1 5.1814 1.9482 2.6119 31 1 6.0104 1.7391 1.0508 32 1 4.9180 4.1781 3.6083 33 1 5.3724 5.6358 2.6940 34 1 3.9708 4.6650 2.1822 35 1 7.2207 3.3616 3.3565 36 1 7.9086 3.0541 1.7439 37 1 7.3679 5.8170 1.9691 38 1 9.3947 8.4417 2.3302 39 1 3.0194 1.2347 -1.9495 40 1 0.0261 1.9975 -1.6470 41 1 0.8047 1.0394 -2.9800 42 1 2.0660 2.9878 -3.7667 43 1 0.7157 3.9254 -2.9944 44 1 3.3189 3.6659 -1.7723 45 1 1.7974 3.8479 -0.7962 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626642.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:38 Heat of formation + Delta-G solvation = -59.810203 kcal Electronic energy + Delta-G solvation = -22843.104858 eV Core-core repulsion = 19475.532605 eV Total energy + Delta-G solvation = -3367.572253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60708 -38.77490 -37.30764 -36.61886 -34.33324 -32.54025 -30.45315 -29.60605 -26.85255 -26.49168 -25.89909 -25.27823 -23.68076 -22.32176 -20.60575 -19.90534 -19.83543 -17.72155 -17.16346 -16.81491 -16.46686 -15.85783 -15.40755 -15.18482 -14.76855 -14.36567 -14.24040 -13.89068 -13.59129 -13.43882 -13.03999 -12.88233 -12.63208 -12.43477 -12.34000 -12.20558 -12.05190 -11.77841 -11.27621 -11.06443 -10.90437 -10.84995 -10.70310 -10.67932 -10.57258 -10.42338 -10.12723 -10.01794 -9.69355 -9.39805 -9.01721 -8.87090 -6.92355 -5.77065 -3.05331 2.57250 2.78922 3.44825 3.48959 3.50087 3.68426 4.14790 4.28241 4.33637 4.51451 4.59307 4.59974 4.78871 4.93216 5.02808 5.07862 5.09308 5.22001 5.27092 5.34038 5.38297 5.42988 5.48438 5.56235 5.57896 5.62765 5.79078 5.81194 5.96057 5.99799 6.06166 6.10668 6.23688 6.38659 6.47437 6.64461 6.76612 6.77348 6.86946 7.48760 7.70269 8.21011 8.42249 9.53438 10.10669 10.45596 11.45940 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.002923 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.858436 B = 9577.842896 C =10177.799613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.084 0.916 5 C 0.512 3.488 6 O -0.523 6.523 7 N -0.721 5.721 8 C 0.127 3.873 9 C -0.110 4.110 10 H 0.076 0.924 11 C -0.141 4.141 12 C 0.160 3.840 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.138 4.138 25 C -0.142 4.142 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.399 0.601 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.043 -9.538 -8.791 24.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.272 6.272 3 C 0.021 3.979 4 H 0.102 0.898 5 C 0.296 3.704 6 O -0.398 6.398 7 N -0.375 5.375 8 C 0.003 3.997 9 C -0.129 4.129 10 H 0.095 0.905 11 C -0.199 4.199 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.147 4.147 23 C -0.173 4.173 24 C -0.176 4.176 25 C -0.180 4.180 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.107 0.893 29 H 0.234 0.766 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.431 -10.520 -8.424 24.476 hybrid contribution 0.444 1.096 0.127 1.189 sum -19.987 -9.424 -8.297 23.604 Atomic orbital electron populations 1.23081 0.80925 1.03281 1.00355 1.88038 1.19442 1.24928 1.94840 1.21983 0.93627 0.86785 0.95475 0.89779 1.20314 0.86155 0.84238 0.79659 1.90722 1.69244 1.29780 1.50047 1.46016 1.22324 1.09189 1.59996 1.21436 0.83255 0.97744 0.97231 1.21551 0.97043 0.93646 1.00674 0.90518 1.21794 0.97523 1.01384 0.99192 1.20576 0.89661 0.89417 0.97126 1.42327 1.16718 1.03785 1.74690 1.19200 0.91810 0.93499 1.32511 0.91204 1.24730 0.98629 0.95714 1.01938 1.69647 1.37535 0.99474 1.51751 0.86251 0.84325 0.76731 0.78795 1.21267 1.21704 1.21262 1.23103 1.00105 0.97062 0.94474 1.22999 0.96604 0.98448 0.99213 1.22778 0.99585 0.97727 0.97472 1.23087 1.01601 0.94605 0.98703 0.94009 0.93023 0.89299 0.76575 0.91279 0.91272 0.92779 0.91107 0.94011 0.95976 0.96093 0.78217 0.93490 0.87991 0.89836 0.90970 0.89886 0.91119 0.90344 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.57 101.05 1.07 1.22 16 2 O -0.36 -4.20 9.84 -55.09 -0.54 -4.75 16 3 C 0.08 0.85 2.46 -27.88 -0.07 0.78 16 4 H 0.08 0.67 7.59 -51.93 -0.39 0.27 16 5 C 0.51 6.95 7.18 -10.99 -0.08 6.87 16 6 O -0.52 -9.53 16.51 -14.30 -0.24 -9.77 16 7 N -0.72 -8.57 5.20 -60.29 -0.31 -8.88 16 8 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 9 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 10 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 11 C -0.14 -2.05 8.94 37.16 0.33 -1.72 16 12 C 0.16 3.18 5.65 -4.04 -0.02 3.16 16 13 N -0.73 -18.24 5.33 -59.91 -0.32 -18.56 16 14 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 15 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -28.07 13.06 55.49 0.72 -27.34 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.13 -1.08 3.33 -89.67 -0.30 -1.38 16 23 C -0.14 -0.88 6.18 -25.92 -0.16 -1.04 16 24 C -0.14 -0.86 8.07 -25.92 -0.21 -1.07 16 25 C -0.14 -0.98 6.30 -25.77 -0.16 -1.14 16 26 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.05 0.30 4.95 -51.93 -0.26 0.04 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.40 3.80 6.32 -40.82 -0.26 3.54 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 34 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.38 9.92 6.85 -40.82 -0.28 9.64 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.46 6.33 -51.93 -0.33 0.13 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.49 7.97 -51.93 -0.41 0.07 16 LS Contribution 358.80 15.07 5.41 5.41 Total: -1.00 -33.72 358.80 -8.11 -41.83 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.72 Total: 6.45 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -0.09 Total: -1.82 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.09 Total: -54.78 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.78 Total: -14.51 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.72 -8.11 -41.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626642.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.977 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds