Wall clock time and date at job start Tue Mar 31 2020 06:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99742 * 2 1 4 4 H 1.09003 * 109.47094 * 29.99827 * 3 2 1 5 5 C 1.50701 * 109.46961 * 270.00295 * 3 2 1 6 6 O 1.21274 * 120.00275 * 354.99983 * 5 3 2 7 7 N 1.34786 * 119.99686 * 174.99923 * 5 3 2 8 8 C 1.46500 * 119.99870 * 179.97438 * 7 5 3 9 9 C 1.52991 * 109.46925 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47625 * 304.99866 * 9 8 7 11 11 C 1.53003 * 109.47277 * 65.00233 * 9 8 7 12 12 C 1.53005 * 109.46991 * 185.00090 * 9 8 7 13 13 N 1.46496 * 109.46946 * 175.00096 * 12 9 8 14 14 C 1.36938 * 119.99986 * 179.97438 * 13 12 9 15 15 H 1.08006 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00021 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00062 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47515 * 89.99959 * 18 16 14 20 20 H 1.48498 * 109.47235 * 210.00146 * 18 16 14 21 21 H 1.48498 * 109.47212 * 329.99776 * 18 16 14 22 22 C 1.52997 * 109.47292 * 150.00152 * 3 2 1 23 23 C 1.53784 * 113.61270 * 37.49696 * 22 3 2 24 24 C 1.53779 * 87.08045 * 220.02125 * 23 22 3 25 25 C 1.53779 * 87.08402 * 25.43458 * 24 23 22 26 26 H 1.08998 * 109.47027 * 299.99909 * 1 2 3 27 27 H 1.08997 * 109.46888 * 60.00122 * 1 2 3 28 28 H 1.09000 * 109.46634 * 180.02562 * 1 2 3 29 29 H 0.96995 * 119.99995 * 0.02562 * 7 5 3 30 30 H 1.08998 * 109.47031 * 300.00513 * 8 7 5 31 31 H 1.08997 * 109.46876 * 60.00133 * 8 7 5 32 32 H 1.08995 * 109.47213 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.46932 * 299.99666 * 11 9 8 34 34 H 1.08997 * 109.46805 * 59.99968 * 11 9 8 35 35 H 1.09003 * 109.47140 * 294.99951 * 12 9 8 36 36 H 1.08998 * 109.46791 * 55.00167 * 12 9 8 37 37 H 0.97004 * 120.00434 * 359.97438 * 13 12 9 38 38 H 0.97002 * 119.99917 * 180.02562 * 17 16 14 39 39 H 1.08994 * 112.91116 * 168.75066 * 22 3 2 40 40 H 1.09002 * 113.61478 * 334.57090 * 23 22 3 41 41 H 1.09004 * 113.61162 * 105.47268 * 23 22 3 42 42 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 43 43 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 44 44 H 1.08997 * 113.61646 * 220.02209 * 25 24 23 45 45 H 1.09000 * 113.61527 * 89.11480 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6587 3.0126 -1.6686 8 6 2.8578 3.4586 -3.0498 9 6 3.3635 4.9025 -3.0515 10 1 2.6734 5.5300 -2.4874 11 6 4.7489 4.9585 -2.4045 12 6 3.4526 5.4099 -4.4922 13 7 3.8218 6.8276 -4.4887 14 6 3.9624 7.5015 -5.6724 15 1 3.8009 6.9879 -6.6087 16 6 4.3117 8.8449 -5.6691 17 7 4.4464 9.4928 -6.8069 18 14 4.5905 9.7335 -4.0498 19 1 6.0188 9.6170 -3.6607 20 1 4.2349 11.1670 -4.2042 21 1 3.7393 9.1229 -2.9972 22 6 3.3589 1.2634 0.7212 23 6 4.1599 -0.0221 0.4551 24 6 4.5529 0.0088 1.9414 25 6 3.2602 0.8050 2.1858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 2.8473 3.6153 -0.9324 30 1 3.5916 2.8163 -3.5368 31 1 1.9122 3.4038 -3.5891 32 1 5.1093 5.9871 -2.4062 33 1 4.6854 4.5971 -1.3781 34 1 5.4389 4.3312 -2.9687 35 1 4.2080 4.8391 -5.0324 36 1 2.4861 5.2873 -4.9810 37 1 3.9666 7.2890 -3.6478 38 1 4.6908 10.4315 -6.8046 39 1 3.9402 2.1756 0.5875 40 1 3.5383 -0.8759 0.1854 41 1 5.0019 0.1205 -0.2223 42 1 5.4608 0.5781 2.1413 43 1 4.5566 -0.9735 2.4140 44 1 3.3759 1.6152 2.9056 45 1 2.3926 0.1772 2.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:42 Heat of formation + Delta-G solvation = -59.007823 kcal Electronic energy + Delta-G solvation = -22866.198743 eV Core-core repulsion = 19498.661283 eV Total energy + Delta-G solvation = -3367.537459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61059 -38.74880 -37.35654 -36.69208 -34.49256 -32.60206 -30.77615 -29.83605 -26.90853 -26.43872 -25.88968 -25.45713 -23.76945 -21.98590 -20.70952 -20.06846 -19.65486 -17.95599 -17.27648 -17.00860 -16.59798 -15.65362 -15.52187 -15.27154 -14.86317 -14.41505 -14.25897 -14.00440 -13.69326 -13.47581 -13.14582 -12.79374 -12.62515 -12.54331 -12.39653 -12.21547 -12.17156 -11.74746 -11.47363 -11.07691 -10.91899 -10.84720 -10.80113 -10.65435 -10.64224 -10.57064 -10.49085 -10.14016 -9.60808 -9.36508 -9.10762 -8.92030 -7.25290 -5.78366 -3.14143 2.48181 2.92421 3.33927 3.36049 3.42472 3.48183 4.15434 4.35813 4.37231 4.56314 4.56648 4.63375 4.81385 4.88508 4.91117 5.06656 5.08583 5.19177 5.20797 5.31785 5.41560 5.46930 5.51965 5.58068 5.61807 5.64068 5.71191 5.77777 5.84630 5.87049 5.91285 6.06072 6.20915 6.23730 6.37237 6.42224 6.63421 6.69816 6.73278 7.39517 7.98004 8.12446 8.40569 9.19341 9.91364 10.11047 11.40146 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.003070 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.790729 B = 9119.114156 C = 9632.244370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.489 3.511 6 O -0.526 6.526 7 N -0.725 5.725 8 C 0.127 3.873 9 C -0.115 4.115 10 H 0.075 0.925 11 C -0.143 4.143 12 C 0.165 3.835 13 N -0.754 5.754 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.111 4.111 23 C -0.127 4.127 24 C -0.142 4.142 25 C -0.129 4.129 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.398 0.602 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.044 0.956 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -18.506 21.443 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.021 3.979 4 H 0.104 0.896 5 C 0.274 3.726 6 O -0.401 6.401 7 N -0.379 5.379 8 C 0.003 3.997 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.200 4.200 12 C 0.037 3.963 13 N -0.400 5.400 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.130 4.130 23 C -0.165 4.165 24 C -0.180 4.180 25 C -0.167 4.167 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.233 0.767 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.386 -19.200 20.505 28.431 hybrid contribution 0.064 1.453 1.304 1.953 sum -4.322 -17.748 21.808 28.448 Atomic orbital electron populations 1.22867 0.80699 1.03196 1.00042 1.87959 1.19857 1.24785 1.94363 1.21870 0.96924 0.86787 0.92308 0.89627 1.21298 0.77405 0.81809 0.92081 1.90715 1.49740 1.53623 1.46047 1.46111 1.67894 1.14324 1.09564 1.21387 1.01430 0.94907 0.81947 1.21606 0.97707 0.94538 0.99519 0.90631 1.21808 0.96404 1.02748 0.99064 1.20551 0.98158 0.85913 0.91673 1.42685 1.85485 1.06458 1.05391 1.19072 1.39563 0.92841 0.85912 0.89170 1.24680 1.01746 0.96477 0.96320 1.69706 1.54580 1.09928 1.24007 0.86542 0.78042 0.79462 0.84433 1.21050 1.21699 1.20425 1.22730 0.93597 1.00228 0.96425 1.22829 0.99386 0.97863 0.96377 1.22795 0.97523 1.00635 0.97022 1.22899 0.98915 1.00010 0.94835 0.94022 0.93603 0.89239 0.76733 0.91152 0.91248 0.91860 0.93666 0.92313 0.95086 0.95299 0.80646 0.93039 0.87727 0.88596 0.91639 0.90275 0.91350 0.91399 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.33 16 2 O -0.35 -3.72 8.00 -55.09 -0.44 -4.16 16 3 C 0.08 0.77 2.52 -27.88 -0.07 0.70 16 4 H 0.09 0.61 7.79 -51.93 -0.40 0.20 16 5 C 0.49 6.03 7.12 -10.98 -0.08 5.95 16 6 O -0.53 -8.79 16.51 -14.30 -0.24 -9.03 16 7 N -0.73 -7.83 5.20 -60.30 -0.31 -8.14 16 8 C 0.13 1.65 5.06 -4.05 -0.02 1.63 16 9 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 10 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 11 C -0.14 -1.87 8.94 37.16 0.33 -1.54 16 12 C 0.16 3.10 5.65 -4.04 -0.02 3.07 16 13 N -0.75 -17.62 5.13 -59.91 -0.31 -17.93 16 14 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 15 H 0.09 2.75 8.06 -52.48 -0.42 2.32 16 16 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 17 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 18 Si 0.88 21.85 27.74 -169.99 -4.71 17.14 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 22 C -0.11 -0.87 3.55 -89.80 -0.32 -1.19 16 23 C -0.13 -1.13 7.48 -25.92 -0.19 -1.32 16 24 C -0.14 -0.99 8.08 -25.92 -0.21 -1.20 16 25 C -0.13 -0.85 7.54 -25.92 -0.20 -1.05 16 26 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.40 3.27 7.51 -40.82 -0.31 2.96 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.94 7.18 -51.93 -0.37 0.57 16 33 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.36 8.11 4.71 -40.82 -0.19 7.92 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.10 0.99 6.98 -51.93 -0.36 0.63 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.60 7.77 -51.93 -0.40 0.20 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -34.13 361.70 -7.86 -41.99 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.91 Total: 5.85 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.16 Total: -2.51 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.15 Total: -54.71 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: -0.68 Total: -13.19 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.13 -7.86 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.022 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds