Wall clock time and date at job start Tue Mar 31 2020 06:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99742 * 2 1 4 4 H 1.09003 * 109.47094 * 29.99827 * 3 2 1 5 5 C 1.50701 * 109.46961 * 270.00295 * 3 2 1 6 6 O 1.21274 * 120.00275 * 354.99983 * 5 3 2 7 7 N 1.34786 * 119.99686 * 174.99923 * 5 3 2 8 8 C 1.46500 * 119.99870 * 179.97438 * 7 5 3 9 9 C 1.52991 * 109.46925 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47625 * 304.99866 * 9 8 7 11 11 C 1.53003 * 109.47277 * 65.00233 * 9 8 7 12 12 C 1.53005 * 109.46991 * 185.00090 * 9 8 7 13 13 N 1.46496 * 109.46946 * 175.00096 * 12 9 8 14 14 C 1.36938 * 119.99986 * 179.97438 * 13 12 9 15 15 H 1.08006 * 120.00018 * 0.02562 * 14 13 12 16 16 C 1.38812 * 120.00200 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00021 * 180.02562 * 16 14 13 18 18 Si 1.86794 * 120.00062 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47515 * 89.99959 * 18 16 14 20 20 H 1.48498 * 109.47235 * 210.00146 * 18 16 14 21 21 H 1.48498 * 109.47212 * 329.99776 * 18 16 14 22 22 C 1.52997 * 109.47292 * 150.00152 * 3 2 1 23 23 C 1.53784 * 113.61270 * 37.49696 * 22 3 2 24 24 C 1.53779 * 87.08045 * 220.02125 * 23 22 3 25 25 C 1.53779 * 87.08402 * 25.43458 * 24 23 22 26 26 H 1.08998 * 109.47027 * 299.99909 * 1 2 3 27 27 H 1.08997 * 109.46888 * 60.00122 * 1 2 3 28 28 H 1.09000 * 109.46634 * 180.02562 * 1 2 3 29 29 H 0.96995 * 119.99995 * 0.02562 * 7 5 3 30 30 H 1.08998 * 109.47031 * 300.00513 * 8 7 5 31 31 H 1.08997 * 109.46876 * 60.00133 * 8 7 5 32 32 H 1.08995 * 109.47213 * 179.97438 * 11 9 8 33 33 H 1.08999 * 109.46932 * 299.99666 * 11 9 8 34 34 H 1.08997 * 109.46805 * 59.99968 * 11 9 8 35 35 H 1.09003 * 109.47140 * 294.99951 * 12 9 8 36 36 H 1.08998 * 109.46791 * 55.00167 * 12 9 8 37 37 H 0.97004 * 120.00434 * 359.97438 * 13 12 9 38 38 H 0.97002 * 119.99917 * 180.02562 * 17 16 14 39 39 H 1.08994 * 112.91116 * 168.75066 * 22 3 2 40 40 H 1.09002 * 113.61478 * 334.57090 * 23 22 3 41 41 H 1.09004 * 113.61162 * 105.47268 * 23 22 3 42 42 H 1.09006 * 113.61307 * 270.88660 * 24 23 22 43 43 H 1.08999 * 113.69146 * 139.99146 * 24 23 22 44 44 H 1.08997 * 113.61646 * 220.02209 * 25 24 23 45 45 H 1.09000 * 113.61527 * 89.11480 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2144 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3413 7 7 2.6587 3.0126 -1.6686 8 6 2.8578 3.4586 -3.0498 9 6 3.3635 4.9025 -3.0515 10 1 2.6734 5.5300 -2.4874 11 6 4.7489 4.9585 -2.4045 12 6 3.4526 5.4099 -4.4922 13 7 3.8218 6.8276 -4.4887 14 6 3.9624 7.5015 -5.6724 15 1 3.8009 6.9879 -6.6087 16 6 4.3117 8.8449 -5.6691 17 7 4.4464 9.4928 -6.8069 18 14 4.5905 9.7335 -4.0498 19 1 6.0188 9.6170 -3.6607 20 1 4.2349 11.1670 -4.2042 21 1 3.7393 9.1229 -2.9972 22 6 3.3589 1.2634 0.7212 23 6 4.1599 -0.0221 0.4551 24 6 4.5529 0.0088 1.9414 25 6 3.2602 0.8050 2.1858 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 2.8473 3.6153 -0.9324 30 1 3.5916 2.8163 -3.5368 31 1 1.9122 3.4038 -3.5891 32 1 5.1093 5.9871 -2.4062 33 1 4.6854 4.5971 -1.3781 34 1 5.4389 4.3312 -2.9687 35 1 4.2080 4.8391 -5.0324 36 1 2.4861 5.2873 -4.9810 37 1 3.9666 7.2890 -3.6478 38 1 4.6908 10.4315 -6.8046 39 1 3.9402 2.1756 0.5875 40 1 3.5383 -0.8759 0.1854 41 1 5.0019 0.1205 -0.2223 42 1 5.4608 0.5781 2.1413 43 1 4.5566 -0.9735 2.4140 44 1 3.3759 1.6152 2.9056 45 1 2.3926 0.1772 2.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753626643.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:41 Heat of formation + Delta-G solvation = -82.300581 kcal Electronic energy + Delta-G solvation = -22867.208792 eV Core-core repulsion = 19498.661283 eV Total energy + Delta-G solvation = -3368.547509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.44001 -39.57659 -38.37829 -37.70244 -36.02380 -34.20808 -32.53138 -30.69905 -27.90404 -27.50132 -26.81383 -26.37155 -24.70438 -23.69326 -21.73097 -21.31631 -20.24521 -19.68432 -18.46064 -17.80068 -17.38406 -16.76697 -16.44718 -16.34920 -16.06609 -15.71331 -15.45443 -15.27217 -14.94162 -14.60087 -14.32234 -13.98859 -13.82633 -13.64478 -13.30197 -13.21015 -13.09479 -12.86614 -12.79621 -12.38625 -12.26870 -12.06415 -11.99554 -11.77209 -11.72935 -11.60556 -11.47808 -11.24953 -11.06574 -10.99094 -10.25000 -10.12181 -9.31312 -8.03342 -5.37868 1.37255 1.42841 1.50107 1.55000 2.03268 2.48751 2.79113 3.27801 3.49311 3.55072 3.73663 3.76585 3.91849 3.93330 4.00896 4.02535 4.12470 4.23175 4.32418 4.50864 4.51222 4.55264 4.67255 4.76541 4.79269 4.83452 4.91848 4.94094 5.01227 5.01837 5.08550 5.14219 5.14840 5.27205 5.34065 5.36562 5.46440 5.65836 5.74473 6.02562 6.20223 6.54860 7.07176 7.22226 7.81653 8.03091 9.18418 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026870 B = 0.003070 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.790729 B = 9119.114156 C = 9632.244370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.373 6.373 3 C 0.086 3.914 4 H 0.116 0.884 5 C 0.487 3.513 6 O -0.577 6.577 7 N -0.710 5.710 8 C 0.137 3.863 9 C -0.097 4.097 10 H 0.089 0.911 11 C -0.142 4.142 12 C 0.159 3.841 13 N -0.753 5.753 14 C -0.239 4.239 15 H 0.051 0.949 16 C -0.067 4.067 17 N -0.986 5.986 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.296 1.296 21 H -0.245 1.245 22 C -0.109 4.109 23 C -0.140 4.140 24 C -0.137 4.137 25 C -0.119 4.119 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.097 0.903 29 H 0.416 0.584 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.369 0.631 38 H 0.259 0.741 39 H 0.122 0.878 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.089 0.911 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.360 -18.282 25.596 31.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.290 6.290 3 C 0.025 3.975 4 H 0.134 0.866 5 C 0.273 3.727 6 O -0.456 6.456 7 N -0.364 5.364 8 C 0.012 3.988 9 C -0.116 4.116 10 H 0.108 0.892 11 C -0.199 4.199 12 C 0.032 3.968 13 N -0.399 5.399 14 C -0.370 4.370 15 H 0.069 0.931 16 C -0.258 4.258 17 N -0.637 5.637 18 Si 0.786 3.214 19 H -0.201 1.201 20 H -0.223 1.223 21 H -0.170 1.170 22 C -0.128 4.128 23 C -0.177 4.177 24 C -0.175 4.175 25 C -0.156 4.156 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.116 0.884 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.203 0.797 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.108 0.892 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.437 -19.004 24.719 31.494 hybrid contribution 0.052 1.271 -0.111 1.277 sum -4.386 -17.734 24.607 30.647 Atomic orbital electron populations 1.22999 0.79751 1.04018 1.00416 1.87952 1.21053 1.25729 1.94243 1.22023 0.98383 0.86926 0.90217 0.86643 1.21999 0.76162 0.81435 0.93057 1.90695 1.52012 1.55063 1.47869 1.45919 1.67144 1.14307 1.09068 1.21101 1.00455 0.94044 0.83213 1.21389 0.99085 0.94898 0.96214 0.89244 1.21810 0.95068 1.01946 1.01073 1.20701 0.97195 0.83662 0.95249 1.42611 1.85383 1.07974 1.03970 1.19035 1.38410 0.93134 0.86465 0.93055 1.25604 1.02113 0.97460 1.00649 1.69908 1.56418 1.10253 1.27085 0.85337 0.78713 0.77387 0.79928 1.20112 1.22305 1.16971 1.22842 0.92622 1.00197 0.97102 1.22829 0.99116 0.98066 0.97695 1.22797 0.98349 1.01110 0.95199 1.22849 0.98363 1.00273 0.94135 0.91384 0.95310 0.88430 0.74692 0.92264 0.92457 0.93215 0.89925 0.92978 0.95885 0.96057 0.79691 0.93272 0.86052 0.90723 0.92710 0.89215 0.91251 0.89438 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.81 113.37 1.23 1.59 16 2 O -0.37 -7.38 8.00 -129.99 -1.04 -8.42 16 3 C 0.09 1.38 2.52 29.85 0.08 1.46 16 4 H 0.12 1.18 7.79 -2.39 -0.02 1.16 16 5 C 0.49 11.28 7.12 87.66 0.62 11.91 16 6 O -0.58 -19.41 16.51 15.98 0.26 -19.14 16 7 N -0.71 -13.51 5.20 -463.07 -2.41 -15.91 16 8 C 0.14 3.36 5.06 86.38 0.44 3.79 16 9 C -0.10 -2.50 2.46 -10.79 -0.03 -2.52 16 10 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 11 C -0.14 -3.26 8.94 71.98 0.64 -2.61 16 12 C 0.16 5.89 5.65 86.38 0.49 6.38 16 13 N -0.75 -34.46 5.13 -343.44 -1.76 -36.23 16 14 C -0.24 -13.79 10.47 84.03 0.88 -12.91 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.99 -63.67 13.97 21.65 0.30 -63.37 16 18 Si 0.96 44.40 27.74 68.60 1.90 46.30 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 22 C -0.11 -1.39 3.55 -10.27 -0.04 -1.42 16 23 C -0.14 -2.31 7.48 31.12 0.23 -2.08 16 24 C -0.14 -1.57 8.08 31.12 0.25 -1.32 16 25 C -0.12 -1.16 7.54 31.12 0.23 -0.93 16 26 H 0.07 0.64 8.08 -2.39 -0.02 0.62 16 27 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.42 5.05 7.51 -92.71 -0.70 4.36 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.31 7.18 -2.39 -0.02 1.29 16 33 H 0.08 1.28 7.18 -2.39 -0.02 1.27 16 34 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.37 15.61 4.71 -92.71 -0.44 15.17 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.12 1.14 7.94 -2.39 -0.02 1.12 16 40 H 0.07 1.56 6.98 -2.39 -0.02 1.54 16 41 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 0.90 7.77 -2.39 -0.02 0.88 16 Total: -1.00 -76.85 361.70 2.53 -74.32 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.22 Total: 24.61 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.50 Total: -2.16 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -3.87 Total: -115.51 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.78 Total: -27.56 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.90 Total: 46.30 kcal Total: -76.85 2.53 -74.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626643.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.982 kcal (2) G-P(sol) polarization free energy of solvation -76.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds