Wall clock time and date at job start Tue Mar 31 2020 06:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 113.99845 * 2 1 4 4 H 1.09010 * 109.47218 * 30.00132 * 3 2 1 5 5 C 1.50699 * 109.47650 * 270.00620 * 3 2 1 6 6 O 1.21279 * 119.99734 * 354.99601 * 5 3 2 7 7 N 1.34773 * 120.00658 * 175.00346 * 5 3 2 8 8 C 1.46490 * 120.00384 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.47559 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.46613 * 54.99525 * 9 8 7 11 11 C 1.53001 * 109.47108 * 295.00069 * 9 8 7 12 12 C 1.52996 * 109.47530 * 174.99686 * 9 8 7 13 13 N 1.46498 * 109.47059 * 184.99929 * 12 9 8 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 9 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31624 * 119.99698 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00072 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47213 * 60.00246 * 18 16 14 20 20 H 1.48502 * 109.47317 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47081 * 299.99875 * 18 16 14 22 22 C 1.53001 * 109.47047 * 150.00138 * 3 2 1 23 23 C 1.53774 * 113.61497 * 37.49812 * 22 3 2 24 24 C 1.53779 * 87.08169 * 220.01949 * 23 22 3 25 25 C 1.53777 * 87.08120 * 25.43245 * 24 23 22 26 26 H 1.09006 * 109.47533 * 299.99367 * 1 2 3 27 27 H 1.09000 * 109.47872 * 59.99773 * 1 2 3 28 28 H 1.09005 * 109.47338 * 179.97438 * 1 2 3 29 29 H 0.97002 * 119.99300 * 359.97438 * 7 5 3 30 30 H 1.08998 * 109.47374 * 59.99359 * 8 7 5 31 31 H 1.09002 * 109.47263 * 299.99603 * 8 7 5 32 32 H 1.09001 * 109.46786 * 59.99727 * 11 9 8 33 33 H 1.09001 * 109.47309 * 179.97438 * 11 9 8 34 34 H 1.08995 * 109.46988 * 299.99895 * 11 9 8 35 35 H 1.09004 * 109.47066 * 65.00196 * 12 9 8 36 36 H 1.08994 * 109.46974 * 305.00344 * 12 9 8 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 9 38 38 H 0.96999 * 119.99739 * 180.02562 * 17 16 14 39 39 H 1.09007 * 112.84690 * 168.80522 * 22 3 2 40 40 H 1.08998 * 113.61474 * 334.57067 * 23 22 3 41 41 H 1.09004 * 113.61088 * 105.46869 * 23 22 3 42 42 H 1.09002 * 113.61130 * 270.88519 * 24 23 22 43 43 H 1.08997 * 113.68811 * 139.99700 * 24 23 22 44 44 H 1.09007 * 113.61524 * 220.01857 * 25 24 23 45 45 H 1.08995 * 113.61208 * 89.11402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5139 5 6 2.2143 1.7646 -1.4208 6 8 1.9790 1.0108 -2.3413 7 7 2.6587 3.0126 -1.6685 8 6 2.8577 3.4586 -3.0496 9 6 3.3624 4.9030 -3.0515 10 1 4.2604 4.9748 -2.4378 11 6 2.2802 5.8221 -2.4813 12 6 3.6888 5.3274 -4.4847 13 7 4.2834 6.6662 -4.4741 14 6 4.6647 7.2554 -5.6501 15 1 4.5229 6.7348 -6.5856 16 6 5.2334 8.5216 -5.6395 17 7 5.4067 9.1557 -4.4992 18 14 5.7529 9.3255 -7.2436 19 1 4.5704 9.4708 -8.1302 20 1 6.3287 10.6651 -6.9623 21 1 6.7730 8.4796 -7.9136 22 6 3.3588 1.2633 0.7212 23 6 4.1597 -0.0222 0.4551 24 6 4.5528 0.0087 1.9415 25 6 3.2601 0.8049 2.1858 26 1 -0.3634 0.5137 0.8901 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 2.8467 3.6155 -0.9322 30 1 1.9121 3.4038 -3.5890 31 1 3.5915 2.8164 -3.5367 32 1 2.0477 5.5197 -1.4602 33 1 2.6399 6.8510 -2.4822 34 1 1.3822 5.7502 -3.0949 35 1 2.7738 5.3409 -5.0770 36 1 4.3938 4.6201 -4.9214 37 1 4.4111 7.1336 -3.6338 38 1 5.8037 10.0407 -4.4919 39 1 3.9390 2.1764 0.5876 40 1 3.5381 -0.8760 0.1854 41 1 5.0017 0.1204 -0.2223 42 1 5.4606 0.5780 2.1413 43 1 4.5566 -0.9736 2.4139 44 1 3.3758 1.6152 2.9057 45 1 2.3926 0.1772 2.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626644.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:45 Heat of formation + Delta-G solvation = -63.424857 kcal Electronic energy + Delta-G solvation = -22761.618970 eV Core-core repulsion = 19393.889974 eV Total energy + Delta-G solvation = -3367.728996 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.54789 -38.67836 -37.27101 -36.56206 -34.35201 -32.56474 -30.45202 -29.59445 -26.82229 -26.28689 -25.80525 -25.26043 -23.75063 -22.33453 -20.62044 -19.86498 -19.59578 -17.74846 -16.97824 -16.92372 -16.48242 -15.64665 -15.50027 -15.04902 -14.85209 -14.44756 -14.16096 -13.84125 -13.59708 -13.41861 -12.99554 -12.76050 -12.58747 -12.44777 -12.27561 -12.13480 -12.05157 -11.69320 -11.07501 -10.92086 -10.85276 -10.79264 -10.69845 -10.59723 -10.57808 -10.43679 -10.41217 -10.07408 -9.70394 -9.30084 -9.02818 -8.87782 -6.93091 -5.77690 -3.06088 2.54455 2.99523 3.44281 3.48426 3.49492 3.53935 4.21729 4.41650 4.43287 4.58851 4.61997 4.69974 4.88544 4.96640 5.05418 5.12820 5.20900 5.23332 5.36766 5.38497 5.45187 5.52373 5.57164 5.63667 5.67205 5.79922 5.83781 5.94060 5.96434 5.99436 6.09978 6.22820 6.29403 6.37476 6.47289 6.63484 6.75223 6.76358 6.85786 7.47538 7.69537 8.19233 8.41620 9.52763 10.09933 10.44814 11.45303 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.028602 B = 0.002822 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.729100 B = 9919.597185 C =10333.771936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.083 3.917 4 H 0.086 0.914 5 C 0.489 3.511 6 O -0.528 6.528 7 N -0.724 5.724 8 C 0.127 3.873 9 C -0.110 4.110 10 H 0.076 0.924 11 C -0.141 4.141 12 C 0.161 3.839 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.111 4.111 23 C -0.128 4.128 24 C -0.142 4.142 25 C -0.129 4.129 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.399 0.601 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 -16.932 16.034 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.021 3.979 4 H 0.104 0.896 5 C 0.274 3.726 6 O -0.404 6.404 7 N -0.377 5.377 8 C 0.003 3.997 9 C -0.129 4.129 10 H 0.095 0.905 11 C -0.198 4.198 12 C 0.032 3.968 13 N -0.375 5.375 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.130 4.130 23 C -0.165 4.165 24 C -0.180 4.180 25 C -0.167 4.167 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.810 -17.632 15.177 24.541 hybrid contribution 0.218 1.304 -0.362 1.371 sum -7.593 -16.328 14.815 23.318 Atomic orbital electron populations 1.22860 0.80768 1.03140 1.00016 1.87954 1.19802 1.24860 1.94369 1.21872 0.96926 0.86719 0.92350 0.89627 1.21289 0.77441 0.81835 0.92049 1.90708 1.49933 1.53670 1.46070 1.46112 1.67758 1.14207 1.09648 1.21410 1.01326 0.95110 0.81854 1.21552 0.99030 0.92581 0.99765 0.90529 1.21789 0.98341 1.00783 0.98931 1.20572 0.95973 0.88479 0.91742 1.42330 1.73870 1.14199 1.07125 1.19201 1.32907 0.98298 0.86667 0.91209 1.24733 1.01943 0.97419 0.96899 1.69647 1.50245 1.14491 1.24007 0.86250 0.78374 0.78527 0.82942 1.21261 1.21690 1.21257 1.22738 0.93602 1.00274 0.96397 1.22827 0.99406 0.97851 0.96402 1.22794 0.97562 1.00605 0.97008 1.22897 0.98878 1.00008 0.94873 0.94027 0.93648 0.89288 0.76653 0.91459 0.91372 0.93972 0.91126 0.92846 0.96025 0.96136 0.78214 0.93477 0.87632 0.88634 0.91619 0.90236 0.91386 0.91364 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.81 101.05 1.09 1.34 16 2 O -0.35 -3.87 8.00 -55.09 -0.44 -4.31 16 3 C 0.08 0.81 2.52 -27.88 -0.07 0.74 16 4 H 0.09 0.65 7.79 -51.92 -0.40 0.24 16 5 C 0.49 6.33 7.12 -10.99 -0.08 6.26 16 6 O -0.53 -9.12 16.51 -14.30 -0.24 -9.36 16 7 N -0.72 -8.39 5.20 -60.30 -0.31 -8.70 16 8 C 0.13 1.76 5.06 -4.05 -0.02 1.74 16 9 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 10 H 0.08 1.17 8.14 -51.92 -0.42 0.75 16 11 C -0.14 -2.04 8.94 37.16 0.33 -1.71 16 12 C 0.16 3.19 5.65 -4.04 -0.02 3.17 16 13 N -0.73 -18.28 5.33 -59.91 -0.32 -18.60 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 17 N -0.94 -28.09 13.06 55.49 0.72 -27.37 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 C -0.11 -0.95 3.54 -89.81 -0.32 -1.26 16 23 C -0.13 -1.21 7.48 -25.92 -0.19 -1.40 16 24 C -0.14 -1.07 8.08 -25.92 -0.21 -1.28 16 25 C -0.13 -0.92 7.54 -25.92 -0.20 -1.12 16 26 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.40 3.64 7.51 -40.82 -0.31 3.33 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 33 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.38 9.95 6.85 -40.82 -0.28 9.67 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.11 0.80 7.94 -51.93 -0.41 0.39 16 40 H 0.10 1.04 6.98 -51.93 -0.36 0.68 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.64 7.77 -51.93 -0.40 0.23 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -33.12 364.81 -8.22 -41.33 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -7.95 Total: 6.89 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -0.15 Total: -2.81 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.09 Total: -54.67 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.68 Total: -13.67 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.12 -8.22 -41.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626644.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.091 kcal (2) G-P(sol) polarization free energy of solvation -33.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds