Wall clock time and date at job start Tue Mar 31 2020 06:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 113.99876 * 2 1 4 4 H 1.09004 * 109.47715 * 29.99476 * 3 2 1 5 5 C 1.50699 * 109.47613 * 150.00178 * 3 2 1 6 6 O 1.21279 * 119.99734 * 4.99469 * 5 3 2 7 7 N 1.34773 * 120.00658 * 185.00213 * 5 3 2 8 8 C 1.46490 * 120.00384 * 179.97438 * 7 5 3 9 9 C 1.53003 * 109.47559 * 179.97438 * 8 7 5 10 10 H 1.09008 * 109.46613 * 54.99525 * 9 8 7 11 11 C 1.53001 * 109.47108 * 295.00069 * 9 8 7 12 12 C 1.52996 * 109.47530 * 174.99686 * 9 8 7 13 13 N 1.46498 * 109.47059 * 184.99929 * 12 9 8 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 9 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.53003 * 109.47047 * 269.99789 * 3 2 1 23 23 C 1.53776 * 113.61777 * 159.13716 * 22 3 2 24 24 C 1.53955 * 87.02220 * 220.05074 * 23 22 3 25 25 C 1.53777 * 87.10983 * 25.36257 * 24 23 22 26 26 H 1.09003 * 109.46860 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47220 * 299.99873 * 1 2 3 28 28 H 1.09001 * 109.46876 * 60.00327 * 1 2 3 29 29 H 0.97002 * 119.99300 * 359.97438 * 7 5 3 30 30 H 1.08998 * 109.47374 * 59.99359 * 8 7 5 31 31 H 1.09002 * 109.47263 * 299.99603 * 8 7 5 32 32 H 1.09001 * 109.46786 * 59.99727 * 11 9 8 33 33 H 1.09001 * 109.47309 * 179.97438 * 11 9 8 34 34 H 1.08995 * 109.46988 * 299.99895 * 11 9 8 35 35 H 1.09004 * 109.47066 * 65.00196 * 12 9 8 36 36 H 1.08994 * 109.46974 * 305.00344 * 12 9 8 37 37 H 0.97001 * 120.00384 * 0.02562 * 13 12 9 38 38 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 39 39 H 1.08996 * 112.85162 * 290.33724 * 22 3 2 40 40 H 1.09010 * 113.61560 * 334.56766 * 23 22 3 41 41 H 1.09003 * 113.62024 * 105.47019 * 23 22 3 42 42 H 1.09003 * 113.53248 * 270.80992 * 24 23 22 43 43 H 1.08994 * 113.74492 * 139.94458 * 24 23 22 44 44 H 1.09004 * 113.61540 * 220.09452 * 25 24 23 45 45 H 1.08995 * 113.61866 * 89.19047 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5137 5 6 3.3386 1.2640 0.7103 6 8 3.7897 0.2047 1.0914 7 7 4.0254 2.4041 0.9224 8 6 5.3165 2.3638 1.6134 9 6 5.8810 3.7816 1.7226 10 1 5.1488 4.4279 2.2067 11 6 6.1878 4.3177 0.3227 12 6 7.1664 3.7564 2.5520 13 7 7.6422 5.1267 2.7572 14 6 8.7821 5.3545 3.4811 15 1 9.3328 4.5236 3.8969 16 6 9.2297 6.6532 3.6805 17 7 10.3255 6.8721 4.3758 18 14 8.2767 8.0902 2.9620 19 1 7.2637 8.5532 3.9442 20 1 9.2130 9.2014 2.6556 21 1 7.5959 7.6587 1.7148 22 6 2.2177 1.7713 -1.4425 23 6 2.3477 3.2970 -1.5846 24 6 1.4919 3.1707 -2.8581 25 6 0.9121 1.8841 -2.2472 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.6647 3.2513 0.6173 30 1 6.0103 1.7391 1.0509 31 1 5.1813 1.9483 2.6120 32 1 5.2720 4.3357 -0.2681 33 1 6.5896 5.3279 0.4005 34 1 6.9198 3.6714 -0.1614 35 1 7.9282 3.1826 2.0241 36 1 6.9665 3.2926 3.5178 37 1 7.1474 5.8729 2.3841 38 1 10.6386 7.7797 4.5149 39 1 3.0016 1.2165 -1.9579 40 1 1.8597 3.8532 -0.7841 41 1 3.3673 3.6327 -1.7740 42 1 2.0781 2.9997 -3.7611 43 1 0.7580 3.9681 -2.9746 44 1 0.7744 1.0806 -2.9709 45 1 0.0309 2.0532 -1.6283 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753626645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:48 Heat of formation + Delta-G solvation = -56.094477 kcal Electronic energy + Delta-G solvation = -22967.279980 eV Core-core repulsion = 19599.868853 eV Total energy + Delta-G solvation = -3367.411127 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68135 -38.84031 -37.40351 -36.75622 -34.47396 -32.57803 -30.77017 -29.85078 -26.90218 -26.67649 -25.98911 -25.49563 -23.70243 -21.97748 -20.70491 -20.05166 -19.94551 -17.93705 -17.36019 -17.03278 -16.55265 -15.90975 -15.47078 -15.24343 -14.88275 -14.39770 -14.24624 -14.06257 -13.70471 -13.48473 -13.20695 -12.94059 -12.65775 -12.49605 -12.47753 -12.26004 -12.23078 -11.85819 -11.46045 -11.32728 -11.05838 -10.93187 -10.77990 -10.76086 -10.63575 -10.57359 -10.17201 -10.10474 -9.60106 -9.46308 -9.09724 -8.91341 -7.24453 -5.77607 -3.13328 2.50802 2.72199 3.34186 3.36649 3.43036 3.62234 4.07237 4.21452 4.27261 4.44367 4.53956 4.57280 4.72166 4.85772 4.89507 5.00107 5.03712 5.08551 5.20029 5.21483 5.28220 5.37721 5.41525 5.49188 5.53110 5.53957 5.65394 5.71906 5.73005 5.85918 5.89130 5.98920 6.07625 6.22074 6.37564 6.44088 6.64861 6.70912 6.74426 7.40555 7.98929 8.14152 8.41280 9.20178 9.92172 10.11873 11.40916 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.003226 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.514000 B = 8678.723826 C = 9423.161435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.355 6.355 3 C 0.083 3.917 4 H 0.084 0.916 5 C 0.512 3.488 6 O -0.521 6.521 7 N -0.723 5.723 8 C 0.127 3.873 9 C -0.114 4.114 10 H 0.075 0.925 11 C -0.144 4.144 12 C 0.165 3.835 13 N -0.754 5.754 14 C -0.244 4.244 15 H 0.091 0.909 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.885 3.115 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.278 1.278 22 C -0.128 4.128 23 C -0.143 4.143 24 C -0.138 4.138 25 C -0.135 4.135 26 H 0.089 0.911 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.399 0.601 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 -8.417 -14.797 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.272 6.272 3 C 0.021 3.979 4 H 0.102 0.898 5 C 0.297 3.703 6 O -0.395 6.395 7 N -0.377 5.377 8 C 0.004 3.996 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.201 4.201 12 C 0.037 3.963 13 N -0.400 5.400 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.582 5.582 18 Si 0.716 3.284 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.147 4.147 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.173 4.173 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.233 0.767 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.905 -9.427 -14.370 28.636 hybrid contribution -0.927 1.786 -0.550 2.086 sum -23.832 -7.641 -14.921 29.137 Atomic orbital electron populations 1.23067 0.80861 1.03323 1.00329 1.88040 1.19489 1.24855 1.94832 1.21982 0.93609 0.86857 0.95442 0.89776 1.20316 0.86142 0.84220 0.79666 1.90731 1.69178 1.29752 1.49886 1.46014 1.22249 1.09212 1.60216 1.21412 0.83354 0.97472 0.97407 1.21607 0.99231 0.94915 0.97601 0.90619 1.21826 1.00608 1.02281 0.95395 1.20551 0.91588 0.88015 0.96145 1.42682 1.30118 1.01806 1.65409 1.19073 0.99678 0.93923 1.24683 0.89164 1.24676 0.97426 0.96941 1.00184 1.69700 1.23686 1.20192 1.44652 0.86542 0.79520 0.83425 0.78960 1.21113 1.21726 1.20382 1.23048 1.00055 0.97020 0.94568 1.23077 1.01443 0.94739 0.98788 1.22805 0.99386 0.97890 0.97456 1.22992 0.96517 0.98458 0.99284 0.89248 0.93979 0.93089 0.76656 0.91057 0.91065 0.93688 0.91760 0.92325 0.95106 0.95192 0.80651 0.93047 0.87970 0.89707 0.90427 0.89894 0.91094 0.90929 0.89857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.58 101.05 1.07 1.22 16 2 O -0.35 -4.05 9.85 -55.09 -0.54 -4.59 16 3 C 0.08 0.80 2.44 -27.88 -0.07 0.73 16 4 H 0.08 0.63 7.62 -51.93 -0.40 0.23 16 5 C 0.51 6.64 7.18 -10.99 -0.08 6.56 16 6 O -0.52 -9.21 16.51 -14.30 -0.24 -9.45 16 7 N -0.72 -8.02 5.17 -60.30 -0.31 -8.33 16 8 C 0.13 1.66 5.06 -4.05 -0.02 1.64 16 9 C -0.11 -1.61 2.46 -90.62 -0.22 -1.83 16 10 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 11 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 12 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 13 N -0.75 -17.58 5.13 -59.91 -0.31 -17.88 16 14 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 15 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 16 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 17 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 18 Si 0.89 21.82 27.74 -169.99 -4.71 17.11 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 22 C -0.13 -0.99 3.32 -89.81 -0.30 -1.29 16 23 C -0.14 -0.87 6.18 -25.83 -0.16 -1.03 16 24 C -0.14 -0.77 8.09 -25.83 -0.21 -0.97 16 25 C -0.14 -0.80 6.14 -25.92 -0.16 -0.96 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.05 0.27 5.04 -51.93 -0.26 0.01 16 29 H 0.40 3.44 6.23 -40.82 -0.25 3.18 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.46 7.18 -51.93 -0.37 0.08 16 33 H 0.06 0.97 7.18 -51.93 -0.37 0.60 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.36 8.09 4.71 -40.82 -0.19 7.89 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.43 7.98 -51.92 -0.41 0.01 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.42 6.49 -51.93 -0.34 0.08 16 LS Contribution 355.72 15.07 5.36 5.36 Total: -1.00 -34.75 355.72 -7.75 -42.50 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.69 Total: 5.41 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -0.09 Total: -1.48 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.16 Total: -54.86 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.78 Total: -14.04 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.75 -7.75 -42.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753626645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.595 kcal (2) G-P(sol) polarization free energy of solvation -34.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds