Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46977 * 2 1 4 4 C 1.34636 * 116.99855 * 180.02562 * 3 2 1 5 5 O 1.21509 * 120.00384 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00274 * 180.02562 * 4 3 2 7 7 C 1.46919 * 120.63395 * 179.97438 * 6 4 3 8 8 C 1.53195 * 108.89273 * 126.29715 * 7 6 4 9 9 C 1.53346 * 109.14901 * 54.57640 * 8 7 6 10 10 N 1.46900 * 109.42051 * 178.67519 * 9 8 7 11 11 C 1.46907 * 110.99928 * 275.13331 * 10 9 8 12 12 C 1.53000 * 109.47070 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47061 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46989 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00380 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99756 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00177 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99812 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47212 * 59.99803 * 18 16 14 20 20 H 1.48503 * 109.47208 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47471 * 299.99802 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 9 8 7 23 23 C 1.46933 * 120.62602 * 359.97266 * 6 4 3 24 24 H 1.08998 * 109.47564 * 59.99961 * 1 2 3 25 25 H 1.09003 * 109.47253 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47174 * 299.99222 * 1 2 3 27 27 H 1.09002 * 109.46530 * 240.00451 * 2 1 3 28 28 H 1.08996 * 109.47037 * 120.00579 * 2 1 3 29 29 H 1.09002 * 109.58751 * 246.15665 * 7 6 4 30 30 H 1.08996 * 109.58750 * 6.43850 * 7 6 4 31 31 H 1.08997 * 109.49914 * 174.65962 * 8 7 6 32 32 H 1.09002 * 109.49585 * 294.75599 * 8 7 6 33 33 H 1.09001 * 109.42242 * 58.75065 * 9 8 7 34 34 H 1.00900 * 111.00301 * 151.17769 * 10 9 8 35 35 H 1.09005 * 109.46585 * 299.99650 * 11 10 9 36 36 H 1.08994 * 109.47323 * 59.99764 * 11 10 9 37 37 H 1.09003 * 109.46848 * 299.99712 * 12 11 10 38 38 H 1.09004 * 109.47207 * 59.99877 * 12 11 10 39 39 H 1.09005 * 109.46751 * 299.99892 * 13 12 11 40 40 H 1.08994 * 109.47165 * 60.00012 * 13 12 11 41 41 H 0.96999 * 119.99930 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.50232 * 301.42239 * 22 9 8 43 43 H 1.09007 * 109.52628 * 181.33900 * 22 9 8 44 44 H 1.08994 * 109.58580 * 353.42544 * 23 6 4 45 45 H 1.09006 * 109.57831 * 113.70037 * 23 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3487 1.5454 -0.0005 5 8 4.0890 0.5818 -0.0015 6 7 3.8639 2.7908 0.0000 7 6 5.3183 2.9993 -0.0001 8 6 5.6874 3.9196 -1.1679 9 6 4.8644 5.2098 -1.0712 10 7 5.2367 6.1102 -2.1705 11 6 6.4190 6.9085 -1.8198 12 6 6.7758 7.8314 -2.9868 13 6 8.0068 8.6633 -2.6213 14 6 8.3578 9.5726 -3.7705 15 1 7.7628 9.5584 -4.6717 16 6 9.4394 10.4221 -3.6719 17 7 10.1643 10.4392 -2.5747 18 14 9.8750 11.5489 -5.0967 19 1 8.7322 12.4542 -5.3791 20 1 11.0696 12.3564 -4.7419 21 1 10.1690 10.7323 -6.3016 22 6 3.3739 4.8767 -1.1676 23 6 2.9817 3.9658 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 5.6211 3.4617 0.9394 30 1 5.8248 2.0412 -0.1156 31 1 6.7501 4.1575 -1.1217 32 1 5.4671 3.4178 -2.1101 33 1 5.0664 5.6980 -0.1177 34 1 4.4632 6.7041 -2.4293 35 1 6.2033 7.5077 -0.9351 36 1 7.2578 6.2440 -1.6129 37 1 6.9916 7.2318 -3.8712 38 1 5.9371 8.4960 -3.1941 39 1 7.7905 9.2628 -1.7369 40 1 8.8456 7.9990 -2.4137 41 1 10.9249 11.0371 -2.5052 42 1 3.1753 4.3662 -2.1099 43 1 2.7912 5.7969 -1.1226 44 1 1.9466 3.6455 -0.1172 45 1 3.0926 4.5054 0.9411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224847.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = -101.553124 kcal Electronic energy + Delta-G solvation = -22264.892989 eV Core-core repulsion = 18895.510627 eV Total energy + Delta-G solvation = -3369.382362 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 284.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.87731 -38.82393 -36.84397 -35.80340 -33.75590 -32.34659 -31.81824 -31.25641 -29.91291 -26.39324 -24.69036 -23.84090 -23.17174 -22.20227 -21.31662 -20.27616 -19.80271 -18.30719 -17.19820 -16.92445 -16.28249 -15.67985 -15.18191 -14.99324 -14.80302 -14.44114 -14.37413 -14.04990 -13.82584 -13.43878 -13.17170 -13.14025 -12.54948 -12.29518 -12.22471 -12.05544 -11.94675 -11.82590 -11.48455 -11.34960 -10.93949 -10.87311 -10.82475 -10.72438 -10.61414 -10.47355 -10.44144 -9.68654 -9.34100 -9.08790 -8.99567 -8.33206 -8.20794 -5.98422 -4.00538 1.86170 2.58772 3.34563 3.38676 3.41441 3.54806 4.20746 4.48099 4.50781 4.58003 4.62889 4.65167 4.82524 4.92289 5.04430 5.06514 5.18219 5.27170 5.37238 5.39488 5.41401 5.46573 5.52435 5.56605 5.66905 5.73510 5.78520 5.90683 5.95593 6.10160 6.22322 6.23816 6.34396 6.71932 6.77429 7.07339 7.14144 7.33141 7.60877 7.69357 7.84470 8.01851 8.03731 8.45158 9.06440 9.63310 11.12943 Molecular weight = 284.19amu Principal moments of inertia in cm(-1) A = 0.050339 B = 0.002259 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.094602 B =12389.649881 C =12617.257232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.651 3.349 5 O -0.576 6.576 6 N -0.592 5.592 7 C 0.126 3.874 8 C -0.123 4.123 9 C 0.086 3.914 10 N -0.688 5.688 11 C 0.060 3.940 12 C -0.107 4.107 13 C 0.022 3.978 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.137 4.137 23 C 0.115 3.885 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.339 0.661 35 H 0.024 0.976 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.261 0.739 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.481 -18.126 7.861 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.465 6.465 6 N -0.332 5.332 7 C 0.005 3.995 8 C -0.162 4.162 9 C -0.024 4.024 10 N -0.319 5.319 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.015 4.015 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.175 4.175 23 C -0.008 4.008 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.157 0.843 35 H 0.042 0.958 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.789 -18.870 7.611 27.695 hybrid contribution 0.010 1.304 -0.110 1.308 sum -18.780 -17.566 7.500 26.786 Atomic orbital electron populations 1.21828 0.92543 1.03075 1.03545 1.22944 0.94788 0.78810 1.02778 1.86221 1.22179 1.33076 1.87055 1.17983 0.81116 0.84061 0.76316 1.90985 1.59806 1.39412 1.56294 1.46973 1.07650 1.02924 1.75668 1.21744 0.77161 1.01536 0.99098 1.22012 1.00856 0.94945 0.98350 1.21533 0.93474 0.93898 0.93538 1.60561 1.08821 1.24179 1.38309 1.22176 0.91954 0.94841 0.97914 1.21625 0.99900 0.96637 0.96351 1.19060 0.91603 0.94152 0.96724 1.21221 1.12325 1.20976 1.01264 0.92734 1.25034 0.96349 0.97322 0.95847 1.69953 1.18482 1.38586 1.26573 0.86651 0.77774 0.80752 0.82773 1.20289 1.21320 1.20223 1.22130 0.96235 0.99912 0.99248 1.21729 0.94346 0.85884 0.98829 0.91422 0.90009 0.91490 0.91173 0.91238 0.90973 0.88454 0.89923 0.90707 0.93719 0.84325 0.95754 0.91475 0.92573 0.93695 0.96847 0.96591 0.92987 0.90469 0.90456 0.88908 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.29 37.16 0.38 -0.38 16 2 C 0.08 0.64 6.19 37.16 0.23 0.87 16 3 O -0.37 -3.85 8.86 -40.31 -0.36 -4.20 16 4 C 0.65 8.07 8.43 54.06 0.46 8.52 16 5 O -0.58 -8.74 15.54 -19.28 -0.30 -9.04 16 6 N -0.59 -6.33 2.97 -178.53 -0.53 -6.86 16 7 C 0.13 1.32 6.42 -3.71 -0.02 1.29 16 8 C -0.12 -1.39 5.62 -26.45 -0.15 -1.54 16 9 C 0.09 0.96 2.46 -67.52 -0.17 0.80 16 10 N -0.69 -9.45 6.31 -106.51 -0.67 -10.12 16 11 C 0.06 1.00 5.48 -3.82 -0.02 0.98 16 12 C -0.11 -2.20 5.41 -26.73 -0.14 -2.34 16 13 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 14 C -0.52 -14.86 9.11 -34.44 -0.31 -15.17 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 18 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.14 -1.23 5.37 -26.59 -0.14 -1.37 16 23 C 0.12 0.97 6.45 -3.69 -0.02 0.95 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 31 H 0.08 0.98 7.43 -51.93 -0.39 0.59 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 34 H 0.34 4.32 8.33 -39.29 -0.33 3.99 16 35 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.07 1.15 7.42 -51.93 -0.39 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.60 8.10 -51.92 -0.42 0.18 16 44 H 0.09 0.71 6.93 -51.93 -0.36 0.35 16 45 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -32.64 362.44 -8.94 -41.58 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -8.10 Total: -1.78 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -0.15 Total: -5.45 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: -0.47 Total: -43.37 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.66 Total: -13.25 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.64 -8.94 -41.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224847.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.974 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds