Wall clock time and date at job start Tue Mar 31 2020 07:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31432 * 1 3 3 Si 1.86792 * 119.99835 * 2 1 4 4 H 1.48505 * 109.46842 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47188 * 299.99580 * 3 2 1 6 6 H 1.48497 * 109.47532 * 60.00440 * 3 2 1 7 7 C 1.38789 * 119.99456 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99592 * 180.27219 * 7 2 1 9 9 O 1.34861 * 120.00604 * 0.02562 * 7 2 1 10 10 C 1.34791 * 117.00335 * 179.97438 * 9 7 2 11 11 O 1.21570 * 119.99974 * 0.02562 * 10 9 7 12 12 C 1.47201 * 120.00424 * 179.97438 * 10 9 7 13 13 C 1.39857 * 120.20168 * 5.95866 * 12 10 9 14 14 C 1.37671 * 119.92700 * 179.97438 * 13 12 10 15 15 C 1.38758 * 120.35135 * 0.02562 * 14 13 12 16 16 Br 1.89100 * 119.78897 * 179.97438 * 15 14 13 17 17 C 1.38077 * 120.41883 * 359.97438 * 15 14 13 18 18 C 1.38896 * 120.06306 * 359.72237 * 17 15 14 19 19 N 1.38850 * 120.17745 * 180.27647 * 18 17 15 20 20 H 0.97004 * 119.99789 * 359.97438 * 1 2 3 21 21 H 1.07997 * 120.03807 * 0.02562 * 13 12 10 22 22 H 1.07994 * 119.82749 * 180.02562 * 14 13 12 23 23 H 1.07997 * 119.96990 * 180.02562 * 17 15 14 24 24 H 0.96992 * 120.00233 * 203.47130 * 19 18 17 25 25 H 0.97007 * 119.99498 * 23.47075 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8896 2.3963 -1.2125 6 1 1.8896 2.3964 1.2125 7 6 2.0082 -1.2020 -0.0005 8 1 3.0882 -1.2020 0.0039 9 8 1.3339 -2.3700 -0.0016 10 6 2.0679 -3.5004 -0.0026 11 8 3.2820 -3.4369 -0.0021 12 6 1.3997 -4.8120 -0.0032 13 6 0.0091 -4.8931 -0.1282 14 6 -0.6100 -6.1227 -0.1286 15 6 0.1385 -7.2846 -0.0050 16 35 -0.7284 -8.9652 -0.0068 17 6 1.5122 -7.2213 0.1193 18 6 2.1552 -5.9902 0.1154 19 7 3.5370 -5.9241 0.2345 20 1 -0.4850 0.8401 0.0004 21 1 -0.5784 -3.9921 -0.2251 22 1 -1.6839 -6.1834 -0.2257 23 1 2.0877 -8.1302 0.2146 24 1 3.9570 -5.1160 0.5681 25 1 4.0824 -6.6863 -0.0160 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307728811.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:37 Heat of formation + Delta-G solvation = -50.392520 kcal Electronic energy + Delta-G solvation = -14395.180688 eV Core-core repulsion = 11613.247255 eV Total energy + Delta-G solvation = -2781.933433 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 284.979 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -39.74753 -38.20697 -35.47653 -34.05636 -32.36275 -31.89820 -29.49640 -28.51516 -25.52111 -23.09037 -22.09322 -20.26678 -17.83609 -17.32886 -16.40634 -16.33878 -15.36469 -14.64985 -14.41871 -14.16250 -13.92361 -13.60489 -13.03226 -12.61359 -11.78725 -11.57798 -11.40148 -11.28252 -11.01627 -10.53210 -10.46222 -10.25556 -9.98660 -9.90672 -9.07915 -8.68682 -8.57343 -7.40778 -6.52035 -4.14807 1.03630 1.67554 1.74638 3.05537 3.14297 3.21551 3.37360 3.86956 4.23185 4.26026 4.50461 5.06054 5.08532 5.33665 5.58541 5.73851 5.96620 6.09317 6.38067 6.63693 6.82373 6.94915 7.30346 7.73583 7.85127 8.18397 8.66171 8.96617 9.74973 10.65451 Molecular weight = 284.98amu Principal moments of inertia in cm(-1) A = 0.042422 B = 0.004164 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.880462 B = 6723.153021 C = 7369.881509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.375 4.375 8 H 0.099 0.901 9 O -0.202 6.202 10 C 0.442 3.558 11 O -0.561 6.561 12 C -0.156 4.156 13 C -0.020 4.020 14 C -0.164 4.164 15 C -0.028 4.028 16 Br -0.064 7.064 17 C -0.185 4.185 18 C 0.268 3.732 19 N -0.858 5.858 20 H 0.271 0.729 21 H 0.149 0.851 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.417 0.583 25 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.371 -15.651 0.185 15.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.451 4.451 8 H 0.116 0.884 9 O -0.108 6.108 10 C 0.292 3.708 11 O -0.461 6.461 12 C -0.162 4.162 13 C -0.040 4.040 14 C -0.185 4.185 15 C -0.109 4.109 16 Br 0.022 6.978 17 C -0.210 4.210 18 C 0.158 3.842 19 N -0.404 5.404 20 H 0.081 0.919 21 H 0.166 0.834 22 H 0.149 0.851 23 H 0.149 0.851 24 H 0.257 0.743 25 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.586 -16.015 0.201 16.095 hybrid contribution 0.903 1.098 -0.003 1.421 sum -0.683 -14.918 0.198 14.934 Atomic orbital electron populations 1.69988 1.06058 1.27901 1.45338 1.25390 0.95870 0.98990 0.96116 0.85579 0.79461 0.79819 0.78214 1.18885 1.20069 1.20076 1.21354 0.92569 0.79715 1.51474 0.88378 1.83908 1.39048 1.13231 1.74606 1.20497 0.85612 0.85217 0.79496 1.90398 1.15238 1.87230 1.53245 1.19124 0.93965 0.90671 1.12476 1.21413 0.93042 0.98006 0.91564 1.20777 0.99985 0.90562 1.07210 1.21562 0.94286 0.90808 1.04201 1.96644 1.79334 1.24193 1.97652 1.20439 0.92680 0.96583 1.11288 1.17500 0.85045 0.91389 0.90301 1.42925 1.02913 1.21612 1.72978 0.91883 0.83368 0.85079 0.85083 0.74331 0.78159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.33 13.67 55.49 0.76 -23.57 15 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 15 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.70 15 4 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 7 C -0.38 -10.80 9.65 30.94 0.30 -10.50 15 8 H 0.10 2.83 6.86 -52.48 -0.36 2.47 15 9 O -0.20 -5.66 9.01 -21.82 -0.20 -5.85 15 10 C 0.44 10.93 7.80 34.37 0.27 11.20 15 11 O -0.56 -14.29 13.04 -19.32 -0.25 -14.54 15 12 C -0.16 -3.15 5.89 -104.81 -0.62 -3.76 15 13 C -0.02 -0.37 9.61 -39.18 -0.38 -0.75 15 14 C -0.16 -2.50 9.76 -39.60 -0.39 -2.88 15 15 C -0.03 -0.41 6.23 -39.45 -0.25 -0.65 15 16 Br -0.06 -0.76 33.68 -68.01 -2.29 -3.06 15 17 C -0.19 -2.70 9.65 -39.40 -0.38 -3.08 15 18 C 0.27 4.60 6.76 -83.60 -0.57 4.03 15 19 N -0.86 -13.35 8.52 32.55 0.28 -13.07 15 20 H 0.27 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.15 2.81 7.62 -52.49 -0.40 2.41 15 22 H 0.13 1.72 8.06 -52.49 -0.42 1.30 15 23 H 0.13 1.59 8.06 -52.49 -0.42 1.16 15 24 H 0.42 7.39 6.04 -40.82 -0.25 7.14 15 25 H 0.39 4.63 8.90 -40.82 -0.36 4.26 15 LS Contribution 253.48 15.07 3.82 3.82 Total: -1.00 -30.36 253.48 -6.36 -36.71 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -1.35 Total: 9.21 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -2.10 Total: -5.36 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 1.04 Total: -36.64 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.45 Total: -20.39 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 35 Polarization: -0.76 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.36 -6.36 -36.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307728811.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.678 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds