Wall clock time and date at job start Tue Mar 31 2020 08:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.46889 * 270.00144 * 3 2 1 5 5 H 1.48501 * 109.46890 * 30.00200 * 3 2 1 6 6 H 1.48496 * 109.47110 * 150.00221 * 3 2 1 7 7 C 1.40118 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99618 * 179.97438 * 7 2 1 9 9 C 1.40816 * 120.00062 * 0.02562 * 7 2 1 10 10 N 1.33908 * 120.27629 * 359.97047 * 9 7 2 11 11 C 1.31718 * 119.89621 * 180.02562 * 10 9 7 12 12 C 1.38975 * 120.47247 * 0.02562 * 11 10 9 13 13 N 1.32239 * 120.56806 * 0.02562 * 12 11 10 14 14 C 1.32611 * 120.09150 * 359.97438 * 13 12 11 15 15 N 1.37935 * 120.23957 * 179.97438 * 14 13 12 16 16 C 1.46495 * 120.00038 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47290 * 179.97438 * 16 15 14 18 18 C 1.53005 * 109.47256 * 179.97438 * 17 16 15 19 19 Br 1.96595 * 109.47192 * 179.97438 * 18 17 16 20 20 H 0.97003 * 120.00359 * 359.97438 * 1 2 3 21 21 H 1.07998 * 119.76299 * 180.28338 * 11 10 9 22 22 H 1.07998 * 119.71037 * 180.02562 * 12 11 10 23 23 H 0.97005 * 120.00125 * 179.97438 * 15 14 13 24 24 H 1.09004 * 109.47169 * 300.00094 * 16 15 14 25 25 H 1.09004 * 109.47225 * 59.99875 * 16 15 14 26 26 H 1.09001 * 109.47342 * 299.99689 * 17 16 15 27 27 H 1.09004 * 109.47084 * 59.99794 * 17 16 15 28 28 H 1.09001 * 109.46799 * 300.00154 * 18 17 16 29 29 H 1.09000 * 109.46638 * 59.99962 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.4887 2.0464 -1.4000 5 1 1.4387 2.6527 0.7001 6 1 3.5388 1.4402 0.7000 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2134 -0.0010 9 6 1.3038 -2.4330 -0.0016 10 7 -0.0352 -2.4395 -0.0016 11 6 -0.6862 -3.5845 -0.0021 12 6 0.0067 -4.7892 -0.0022 13 7 1.3290 -4.8044 -0.0012 14 6 2.0071 -3.6648 -0.0007 15 7 3.3864 -3.6771 0.0008 16 6 4.1075 -4.9522 0.0013 17 6 5.6142 -4.6861 0.0024 18 6 6.3674 -6.0180 0.0035 19 35 8.3033 -5.6760 0.0041 20 1 -0.4851 0.8400 0.0004 21 1 -1.7662 -3.5872 -0.0067 22 1 -0.5395 -5.7209 -0.0030 23 1 3.8789 -2.8414 0.0008 24 1 3.8381 -5.5217 0.8909 25 1 3.8401 -5.5212 -0.8891 26 1 5.8833 -4.1169 -0.8874 27 1 5.8820 -4.1169 0.8926 28 1 6.0982 -6.5868 0.8935 29 1 6.0996 -6.5875 -0.8865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163415744.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:41 Heat of formation + Delta-G solvation = 37.487783 kcal Electronic energy + Delta-G solvation = -14536.576794 eV Core-core repulsion = 11926.579982 eV Total energy + Delta-G solvation = -2609.996812 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 285.017 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.98453 -36.11819 -33.97934 -33.29790 -31.48157 -30.21198 -28.49405 -25.96498 -24.86894 -22.23159 -21.32790 -21.06035 -17.61608 -16.60639 -15.91706 -15.62128 -15.01546 -14.11942 -13.99517 -13.60352 -13.18417 -12.88275 -12.63521 -12.32367 -11.97030 -11.45733 -11.35946 -11.11426 -11.06760 -10.62291 -10.23401 -9.96807 -9.94136 -9.84854 -9.41096 -9.38045 -8.58533 -7.36112 -6.82048 -6.42699 -4.44134 1.59036 2.64782 3.04475 3.05542 3.07468 3.23967 3.87620 4.16559 4.71694 4.72867 4.91221 5.13805 5.43842 5.47366 5.82915 5.84699 5.99165 6.15330 6.25920 6.28073 6.47306 6.74256 6.98752 7.06240 7.64682 7.95487 8.09129 8.37405 8.60907 8.85170 9.44437 9.98787 10.22971 Molecular weight = 285.02amu Principal moments of inertia in cm(-1) A = 0.019972 B = 0.004192 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.647728 B = 6677.371768 C = 8053.270925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.068 3.932 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.423 4.423 8 H 0.083 0.917 9 C 0.194 3.806 10 N -0.449 5.449 11 C 0.030 3.970 12 C -0.086 4.086 13 N -0.500 5.500 14 C 0.260 3.740 15 N -0.725 5.725 16 C 0.147 3.853 17 C -0.134 4.134 18 C -0.067 4.067 19 Br -0.173 7.173 20 H 0.274 0.726 21 H 0.124 0.876 22 H 0.123 0.877 23 H 0.403 0.597 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 -7.004 0.007 14.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.457 4.457 8 H 0.101 0.899 9 C 0.060 3.940 10 N -0.167 5.167 11 C -0.133 4.133 12 C -0.240 4.240 13 N -0.222 5.222 14 C 0.014 3.986 15 N -0.367 5.367 16 C 0.020 3.980 17 C -0.173 4.173 18 C -0.183 4.183 19 Br -0.093 7.093 20 H 0.086 0.914 21 H 0.142 0.858 22 H 0.140 0.860 23 H 0.241 0.759 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 13.319 -7.005 0.013 15.049 hybrid contribution 0.000 0.806 -0.008 0.806 sum 13.319 -6.199 0.004 14.690 Atomic orbital electron populations 1.70094 1.07210 1.27979 1.28281 1.26015 0.94912 1.00964 0.93843 0.86323 0.80429 0.80834 0.79275 1.19373 1.20067 1.18469 1.19239 0.93841 0.89343 1.43296 0.89931 1.19047 0.89384 0.91125 0.94415 1.69495 1.06281 1.24598 1.16303 1.23159 0.99693 0.90251 1.00175 1.22259 0.89598 0.97527 1.14645 1.67285 1.08985 1.28432 1.17500 1.19274 0.84947 0.91046 1.03359 1.43591 1.02015 1.06489 1.84602 1.20856 0.88148 0.87882 1.01077 1.22002 0.95444 0.95634 1.04207 1.24649 0.85444 1.01329 1.06888 1.97369 1.15204 1.97075 1.99628 0.91426 0.85829 0.85992 0.75950 0.93051 0.93063 0.90291 0.90297 0.88028 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.63 11.48 55.56 0.64 -17.99 15 2 C 0.07 1.68 5.50 -17.32 -0.10 1.58 15 3 Si 0.91 17.84 29.56 -169.99 -5.03 12.82 15 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 15 5 H -0.28 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 7 C -0.42 -10.69 8.89 -37.90 -0.34 -11.03 15 8 H 0.08 1.87 6.12 -52.49 -0.32 1.55 15 9 C 0.19 5.20 6.56 -84.61 -0.56 4.64 15 10 N -0.45 -12.39 8.03 -10.79 -0.09 -12.47 15 11 C 0.03 0.74 11.21 -17.33 -0.19 0.55 15 12 C -0.09 -2.02 11.22 -17.10 -0.19 -2.21 15 13 N -0.50 -12.14 9.71 -11.67 -0.11 -12.25 15 14 C 0.26 6.33 7.51 -154.83 -1.16 5.16 15 15 N -0.72 -14.27 5.60 -59.89 -0.34 -14.61 15 16 C 0.15 2.30 5.69 -4.04 -0.02 2.28 15 17 C -0.13 -1.58 5.39 -26.73 -0.14 -1.72 15 18 C -0.07 -0.65 6.61 37.16 0.25 -0.41 15 19 Br -0.17 -1.84 33.93 -68.01 -2.31 -4.15 15 20 H 0.27 6.49 8.29 -40.82 -0.34 6.15 15 21 H 0.12 2.67 8.06 -52.49 -0.42 2.24 15 22 H 0.12 2.47 8.06 -52.49 -0.42 2.05 15 23 H 0.40 7.47 6.45 -40.82 -0.26 7.20 15 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 26 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 15 28 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 274.06 15.07 4.13 4.13 Total: -1.00 -29.43 274.06 -8.66 -38.09 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.10 Total: 7.61 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.46 Total: -1.17 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.10 Total: -57.33 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 35 Polarization: -1.84 SS G_CDS: -2.31 Total: -4.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.43 -8.66 -38.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163415744.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.574 kcal (2) G-P(sol) polarization free energy of solvation -29.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds