Wall clock time and date at job start Tue Mar 31 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47430 * 2 1 4 4 S 1.81402 * 109.47175 * 120.00391 * 2 1 3 5 5 C 1.76201 * 102.99705 * 292.58924 * 4 2 1 6 6 C 1.38959 * 120.06508 * 95.21632 * 5 4 2 7 7 C 1.38081 * 119.93342 * 179.97438 * 6 5 4 8 8 C 1.38401 * 120.06705 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.93335 * 179.97438 * 8 7 6 10 10 C 1.38396 * 120.13134 * 0.23499 * 8 7 6 11 11 C 1.38090 * 120.06745 * 359.48948 * 10 8 7 12 12 C 1.50705 * 109.47141 * 240.00441 * 2 1 3 13 13 O 1.21291 * 119.99806 * 265.00498 * 12 2 1 14 14 N 1.34780 * 119.99921 * 84.99610 * 12 2 1 15 15 C 1.37102 * 119.99727 * 180.02562 * 14 12 2 16 16 H 1.08003 * 120.00102 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99709 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99394 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00188 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47144 * 90.00114 * 19 17 15 21 21 H 1.48502 * 109.47284 * 210.00374 * 19 17 15 22 22 H 1.48499 * 109.47210 * 330.00313 * 19 17 15 23 23 H 1.08999 * 109.47659 * 185.93083 * 1 2 3 24 24 H 1.09002 * 109.46901 * 305.93197 * 1 2 3 25 25 H 1.09002 * 109.47068 * 65.92749 * 1 2 3 26 26 H 1.08000 * 120.03236 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.96530 * 180.02562 * 7 6 5 28 28 H 1.08004 * 119.96555 * 179.73718 * 10 8 7 29 29 H 1.07995 * 120.03097 * 180.25609 * 11 10 8 30 30 H 0.97000 * 120.00159 * 0.02562 * 14 12 2 31 31 H 0.97003 * 119.99467 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.6450 0.2207 2.7877 6 6 0.4534 -0.0052 3.4660 7 6 0.0726 0.8394 4.4898 8 6 0.8760 1.9104 4.8403 9 17 0.3935 2.9705 6.1276 10 6 2.0607 2.1411 4.1630 11 6 2.4497 1.2967 3.1420 12 6 2.0323 -0.7103 -1.2306 13 8 2.3207 -1.8872 -1.1762 14 7 2.1610 -0.0379 -2.3915 15 6 2.6175 -0.6843 -3.5111 16 1 2.8736 -1.7324 -3.4628 17 6 2.7506 0.0091 -4.7078 18 7 3.1877 -0.6106 -5.7811 19 14 2.3069 1.8217 -4.7915 20 1 3.5044 2.6397 -4.4717 21 1 1.8322 2.1525 -6.1591 22 1 1.2315 2.1138 -3.8100 23 1 -0.3634 -1.0221 0.1062 24 1 -0.3633 0.6031 0.8321 25 1 -0.3633 0.4192 -0.9383 26 1 -0.1738 -0.8410 3.1931 27 1 -0.8533 0.6641 5.0176 28 1 2.6835 2.9802 4.4360 29 1 3.3762 1.4748 2.6167 30 1 1.9306 0.9034 -2.4349 31 1 3.2803 -0.1267 -6.6166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019887511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:07 Heat of formation + Delta-G solvation = -17.787631 kcal Electronic energy + Delta-G solvation = -17033.256551 eV Core-core repulsion = 14045.750623 eV Total energy + Delta-G solvation = -2987.505928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.033 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35582 -38.55484 -36.77236 -34.12897 -32.81104 -31.58193 -31.41600 -30.83753 -25.57402 -23.55227 -23.03857 -22.97684 -19.58579 -18.69321 -17.89974 -16.57174 -16.20112 -15.68014 -15.22351 -14.81656 -14.30536 -14.18584 -13.83737 -13.79099 -13.52862 -12.93836 -12.82725 -12.33845 -12.15824 -11.95163 -11.87676 -11.67901 -11.30526 -11.22683 -11.15488 -10.66960 -10.07125 -10.05018 -9.67580 -9.36582 -8.84754 -8.66294 -8.28992 -7.54266 -6.39977 -3.91922 0.52584 0.98905 1.66065 1.83923 2.67535 2.96316 3.01071 3.09819 3.34726 3.61111 4.02381 4.42252 4.47143 4.56540 5.01377 5.02631 5.06533 5.20910 5.24824 5.32841 5.57159 5.62483 5.71365 5.81603 5.87403 5.88812 6.05478 6.23518 6.38994 7.45086 8.02115 8.46476 8.83414 9.30582 9.66774 10.72533 Molecular weight = 285.03amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003627 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.887929 B = 7717.481417 C = 8232.809531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 H 0.094 0.906 4 S -0.075 6.075 5 C -0.124 4.124 6 C -0.057 4.057 7 C -0.121 4.121 8 C -0.017 4.017 9 Cl -0.072 7.072 10 C -0.120 4.120 11 C -0.062 4.062 12 C 0.467 3.533 13 O -0.559 6.559 14 N -0.577 5.577 15 C -0.307 4.307 16 H 0.122 0.878 17 C 0.045 3.955 18 N -0.875 5.875 19 Si 0.878 3.122 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.269 1.269 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.142 0.858 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.372 0.628 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.470 9.078 19.915 22.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.224 4.224 3 H 0.112 0.888 4 S 0.158 5.842 5 C -0.235 4.235 6 C -0.078 4.078 7 C -0.142 4.142 8 C -0.044 4.044 9 Cl -0.043 7.043 10 C -0.141 4.141 11 C -0.083 4.083 12 C 0.251 3.749 13 O -0.441 6.441 14 N -0.216 5.216 15 C -0.436 4.436 16 H 0.140 0.860 17 C -0.159 4.159 18 N -0.514 5.514 19 Si 0.704 3.296 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.195 1.195 23 H 0.094 0.906 24 H 0.077 0.923 25 H 0.087 0.913 26 H 0.160 0.840 27 H 0.154 0.846 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.205 0.795 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.674 7.365 19.824 21.896 hybrid contribution -1.019 2.903 -0.164 3.082 sum -6.694 10.268 19.660 23.168 Atomic orbital electron populations 1.21994 0.91783 1.03650 1.02350 1.23498 1.00303 1.02474 0.96144 0.88798 1.86247 1.75461 1.28166 0.94306 1.22312 0.97959 1.00572 1.02706 1.21656 0.94705 0.97984 0.93470 1.21123 1.00219 0.94317 0.98510 1.21097 0.96431 0.93981 0.92869 1.98378 1.91604 1.65161 1.49116 1.21120 0.95646 1.00803 0.96515 1.21703 0.99051 0.92330 0.95219 1.18777 0.85187 0.87657 0.83233 1.90604 1.53842 1.15477 1.84205 1.42121 1.59139 1.11002 1.09303 1.19461 1.40303 0.98462 0.85333 0.86017 1.25039 0.97238 0.98497 0.95118 1.69619 1.44489 1.36677 1.00638 0.86699 0.79148 0.85055 0.78716 1.19415 1.19951 1.19460 0.90604 0.92320 0.91348 0.83977 0.84550 0.84562 0.84077 0.79532 0.91415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.04 37.16 0.34 -1.63 16 2 C -0.09 -1.55 3.13 -27.88 -0.09 -1.64 16 3 H 0.09 1.39 8.14 -51.92 -0.42 0.97 16 4 S -0.08 -1.21 20.39 -107.50 -2.19 -3.40 16 5 C -0.12 -1.54 5.32 -39.05 -0.21 -1.75 16 6 C -0.06 -0.61 9.46 -39.37 -0.37 -0.98 16 7 C -0.12 -1.14 9.82 -39.58 -0.39 -1.53 16 8 C -0.02 -0.16 6.32 -39.46 -0.25 -0.41 16 9 Cl -0.07 -0.63 28.95 -51.86 -1.50 -2.13 16 10 C -0.12 -1.16 9.82 -39.58 -0.39 -1.55 16 11 C -0.06 -0.68 9.79 -39.37 -0.39 -1.07 16 12 C 0.47 10.53 6.90 -10.98 -0.08 10.46 16 13 O -0.56 -14.95 15.71 5.55 0.09 -14.86 16 14 N -0.58 -13.54 5.09 -10.96 -0.06 -13.60 16 15 C -0.31 -8.52 10.16 -14.93 -0.15 -8.67 16 16 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 17 C 0.05 1.21 5.50 -17.47 -0.10 1.11 16 18 N -0.87 -25.06 13.96 55.50 0.77 -24.29 16 19 Si 0.88 18.89 27.74 -169.99 -4.71 14.18 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.26 6.52 56.52 0.37 -4.90 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.06 0.69 7.57 -51.93 -0.39 0.30 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 27 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 31 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 303.53 15.07 4.57 4.57 Total: -1.00 -31.19 303.53 -8.24 -39.43 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -3.14 Total: 7.76 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -2.07 Total: -7.66 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.72 Total: -37.89 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Atomic # 16 Polarization: -1.21 SS G_CDS: -2.19 Total: -3.40 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.19 -8.24 -39.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019887511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.644 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds