Wall clock time and date at job start Tue Mar 31 2020 05:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47430 * 2 1 4 4 S 1.81402 * 109.47175 * 120.00391 * 2 1 3 5 5 C 1.76201 * 102.99705 * 292.58924 * 4 2 1 6 6 C 1.38959 * 120.06508 * 95.21632 * 5 4 2 7 7 C 1.38081 * 119.93342 * 179.97438 * 6 5 4 8 8 C 1.38401 * 120.06705 * 0.02562 * 7 6 5 9 9 Cl 1.73601 * 119.93335 * 179.97438 * 8 7 6 10 10 C 1.38396 * 120.13134 * 0.23499 * 8 7 6 11 11 C 1.38090 * 120.06745 * 359.48948 * 10 8 7 12 12 C 1.50705 * 109.47141 * 240.00441 * 2 1 3 13 13 O 1.21291 * 119.99806 * 265.00498 * 12 2 1 14 14 N 1.34780 * 119.99921 * 84.99610 * 12 2 1 15 15 C 1.37102 * 119.99727 * 180.02562 * 14 12 2 16 16 H 1.08003 * 120.00102 * 0.02562 * 15 14 12 17 17 C 1.38950 * 119.99709 * 180.02562 * 15 14 12 18 18 N 1.31415 * 119.99394 * 180.02562 * 17 15 14 19 19 Si 1.86791 * 120.00188 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47144 * 90.00114 * 19 17 15 21 21 H 1.48502 * 109.47284 * 210.00374 * 19 17 15 22 22 H 1.48499 * 109.47210 * 330.00313 * 19 17 15 23 23 H 1.08999 * 109.47659 * 185.93083 * 1 2 3 24 24 H 1.09002 * 109.46901 * 305.93197 * 1 2 3 25 25 H 1.09002 * 109.47068 * 65.92749 * 1 2 3 26 26 H 1.08000 * 120.03236 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.96530 * 180.02562 * 7 6 5 28 28 H 1.08004 * 119.96555 * 179.73718 * 10 8 7 29 29 H 1.07995 * 120.03097 * 180.25609 * 11 10 8 30 30 H 0.97000 * 120.00159 * 0.02562 * 14 12 2 31 31 H 0.97003 * 119.99467 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.6450 0.2207 2.7877 6 6 0.4534 -0.0052 3.4660 7 6 0.0726 0.8394 4.4898 8 6 0.8760 1.9104 4.8403 9 17 0.3935 2.9705 6.1276 10 6 2.0607 2.1411 4.1630 11 6 2.4497 1.2967 3.1420 12 6 2.0323 -0.7103 -1.2306 13 8 2.3207 -1.8872 -1.1762 14 7 2.1610 -0.0379 -2.3915 15 6 2.6175 -0.6843 -3.5111 16 1 2.8736 -1.7324 -3.4628 17 6 2.7506 0.0091 -4.7078 18 7 3.1877 -0.6106 -5.7811 19 14 2.3069 1.8217 -4.7915 20 1 3.5044 2.6397 -4.4717 21 1 1.8322 2.1525 -6.1591 22 1 1.2315 2.1138 -3.8100 23 1 -0.3634 -1.0221 0.1062 24 1 -0.3633 0.6031 0.8321 25 1 -0.3633 0.4192 -0.9383 26 1 -0.1738 -0.8410 3.1931 27 1 -0.8533 0.6641 5.0176 28 1 2.6835 2.9802 4.4360 29 1 3.3762 1.4748 2.6167 30 1 1.9306 0.9034 -2.4349 31 1 3.2803 -0.1267 -6.6166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019887511.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:07 Heat of formation + Delta-G solvation = -37.145963 kcal Electronic energy + Delta-G solvation = -17034.095991 eV Core-core repulsion = 14045.750623 eV Total energy + Delta-G solvation = -2988.345368 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.033 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41631 -40.13450 -37.48809 -36.12805 -34.34174 -33.45827 -32.18224 -31.66881 -27.40855 -25.03333 -23.84243 -23.82637 -21.43359 -20.49119 -18.93623 -17.93772 -17.53694 -16.79222 -16.49133 -16.19009 -15.82805 -15.34663 -15.13608 -14.80129 -14.56166 -14.55490 -14.18238 -13.91284 -13.49138 -13.03972 -12.93925 -12.73246 -12.65313 -12.46259 -12.33151 -11.99642 -11.86122 -11.57844 -11.12195 -10.56603 -10.32345 -10.11645 -9.70568 -8.79269 -8.45765 -6.07991 -0.35936 0.23466 0.59923 1.04749 1.27864 1.32646 1.42383 1.55937 1.86577 2.19527 2.52720 2.75514 3.09716 3.74145 3.86322 3.88139 3.92063 4.11651 4.24457 4.28938 4.52354 4.64630 4.70970 4.91272 4.94498 5.10760 5.12241 5.27141 5.47453 5.62341 5.87617 6.48896 6.78549 7.28016 7.81167 8.71315 Molecular weight = 285.03amu Principal moments of inertia in cm(-1) A = 0.029316 B = 0.003627 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.887929 B = 7717.481417 C = 8232.809531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.121 0.879 4 S -0.123 6.123 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.116 4.116 8 C -0.018 4.018 9 Cl -0.062 7.062 10 C -0.117 4.117 11 C -0.067 4.067 12 C 0.468 3.532 13 O -0.608 6.608 14 N -0.577 5.577 15 C -0.331 4.331 16 H 0.059 0.941 17 C -0.009 4.009 18 N -0.928 5.928 19 Si 0.960 3.040 20 H -0.255 1.255 21 H -0.272 1.272 22 H -0.231 1.231 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.159 0.841 28 H 0.156 0.844 29 H 0.146 0.854 30 H 0.390 0.610 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 12.663 22.125 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.213 4.213 3 H 0.139 0.861 4 S 0.110 5.890 5 C -0.241 4.241 6 C -0.079 4.079 7 C -0.136 4.136 8 C -0.045 4.045 9 Cl -0.033 7.033 10 C -0.137 4.137 11 C -0.088 4.088 12 C 0.255 3.745 13 O -0.493 6.493 14 N -0.217 5.217 15 C -0.460 4.460 16 H 0.077 0.923 17 C -0.208 4.208 18 N -0.568 5.568 19 Si 0.779 3.221 20 H -0.180 1.180 21 H -0.196 1.196 22 H -0.155 1.155 23 H 0.083 0.917 24 H 0.109 0.891 25 H 0.091 0.909 26 H 0.168 0.832 27 H 0.176 0.824 28 H 0.174 0.826 29 H 0.164 0.836 30 H 0.226 0.774 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.302 10.953 22.053 25.683 hybrid contribution -0.494 1.695 -0.693 1.897 sum -7.796 12.648 21.359 26.019 Atomic orbital electron populations 1.21985 0.89475 1.03783 1.03961 1.23358 1.01931 1.02674 0.93329 0.86086 1.86456 1.76193 1.30340 0.95995 1.22075 0.99390 1.00817 1.01860 1.21743 0.94178 0.98437 0.93592 1.21329 1.00871 0.93586 0.97857 1.21271 0.96389 0.94038 0.92833 1.98390 1.91487 1.64801 1.48580 1.21302 0.95809 1.00906 0.95718 1.21774 0.99125 0.92099 0.95758 1.19852 0.82919 0.87278 0.84492 1.90580 1.55270 1.18133 1.85357 1.41918 1.59572 1.11740 1.08487 1.19020 1.42648 0.96528 0.87853 0.92321 1.26088 0.96133 1.04935 0.93694 1.69793 1.45659 1.39644 1.01662 0.85437 0.80319 0.76546 0.79754 1.17959 1.19647 1.15468 0.91688 0.89076 0.90871 0.83221 0.82352 0.82591 0.83634 0.77382 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 9.04 71.98 0.65 -2.82 16 2 C -0.08 -2.63 3.13 29.85 0.09 -2.54 16 3 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 4 S -0.12 -3.90 20.39 -56.49 -1.15 -5.06 16 5 C -0.13 -2.94 5.32 22.61 0.12 -2.82 16 6 C -0.06 -1.09 9.46 22.41 0.21 -0.88 16 7 C -0.12 -1.77 9.82 22.27 0.22 -1.56 16 8 C -0.02 -0.29 6.32 22.35 0.14 -0.15 16 9 Cl -0.06 -0.89 28.95 -2.72 -0.08 -0.97 16 10 C -0.12 -1.86 9.82 22.27 0.22 -1.64 16 11 C -0.07 -1.29 9.79 22.41 0.22 -1.07 16 12 C 0.47 21.43 6.90 87.66 0.61 22.03 16 13 O -0.61 -34.20 15.71 -3.06 -0.05 -34.24 16 14 N -0.58 -27.15 5.09 -306.97 -1.56 -28.71 16 15 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 16 H 0.06 4.06 7.39 -2.91 -0.02 4.04 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.93 -55.13 13.96 21.66 0.30 -54.82 16 19 Si 0.96 37.85 27.74 68.60 1.90 39.75 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.09 1.81 7.57 -2.39 -0.02 1.79 16 25 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 28 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.39 15.18 5.76 -92.71 -0.53 14.65 16 31 H 0.28 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -73.01 303.53 3.73 -69.28 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.57 Total: 24.62 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: 3.80 Total: -9.85 kcal Atomic # 7 Polarization: -82.28 SS G_CDS: -1.26 Total: -83.54 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.05 Total: -34.24 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -1.15 Total: -5.06 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -73.01 3.73 -69.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019887511.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.132 kcal (2) G-P(sol) polarization free energy of solvation -73.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds