Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46792 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00127 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99932 * 3 2 1 7 7 C 1.37876 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.38461 * 120.01707 * 269.72278 * 15 14 12 17 17 F 1.35102 * 120.02152 * 0.02562 * 16 15 14 18 18 C 1.38447 * 119.95943 * 179.71836 * 16 15 14 19 19 C 1.38229 * 119.99957 * 0.53819 * 18 16 15 20 20 C 1.38198 * 120.03839 * 359.75867 * 19 18 16 21 21 C 1.38288 * 120.02170 * 89.99745 * 15 14 12 22 22 Cl 1.73606 * 119.99782 * 0.02706 * 21 15 14 23 23 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 28 28 H 0.96995 * 120.00423 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 30 30 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 31 31 H 1.07995 * 119.99810 * 180.27394 * 18 16 15 32 32 H 1.07998 * 119.98104 * 179.74437 * 19 18 16 33 33 H 1.07998 * 119.98167 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0020 15 6 2.4128 -8.5485 -0.0018 16 6 2.8594 -9.0781 -1.2007 17 9 2.4179 -8.5680 -2.3712 18 6 3.7636 -10.1265 -1.1992 19 6 4.2114 -10.6513 -0.0014 20 6 3.7609 -10.1267 1.1952 21 6 2.8616 -9.0749 1.1956 22 17 2.2963 -8.4168 2.6993 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.5430 -4.9308 -0.0011 29 1 0.8058 -7.4611 0.8873 30 1 0.8077 -7.4606 -0.8926 31 1 4.1157 -10.5372 -2.1339 32 1 4.9136 -11.4718 -0.0006 33 1 4.1111 -10.5377 2.1305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054137915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -80.078245 kcal Electronic energy + Delta-G solvation = -19315.288104 eV Core-core repulsion = 15894.700971 eV Total energy + Delta-G solvation = -3420.587133 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.10044 -39.88711 -38.70828 -36.64814 -34.88242 -33.16257 -32.78971 -30.66610 -29.85809 -27.72597 -24.66597 -23.10343 -22.40051 -20.95296 -20.06928 -17.97312 -17.06395 -16.94775 -16.37883 -16.14608 -15.62839 -15.07716 -14.99947 -14.85297 -14.45006 -13.83207 -13.62151 -13.45518 -13.30851 -12.92039 -12.42736 -12.29699 -11.78262 -11.64044 -11.55970 -11.19391 -11.06327 -11.02311 -10.62167 -10.32942 -9.83238 -9.53334 -9.25821 -8.97591 -8.91186 -8.54260 -8.35039 -6.09155 -4.11825 0.74761 0.81053 1.84558 2.98924 3.11930 3.28684 3.36187 3.41383 3.75665 4.01371 4.27508 4.42671 4.49889 4.57661 4.91961 5.06598 5.20597 5.23961 5.27992 5.41604 5.64430 5.75586 5.84328 5.91486 6.34172 6.35913 6.46071 6.74603 6.91740 7.52212 7.62219 7.89160 8.00124 8.28071 8.63954 8.94390 9.53046 11.02506 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.003377 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.496572 B = 8288.304550 C = 8731.321993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.721 5.721 12 C 0.512 3.488 13 O -0.542 6.542 14 C -0.113 4.113 15 C -0.085 4.085 16 C 0.125 3.875 17 F -0.129 7.129 18 C -0.150 4.150 19 C -0.082 4.082 20 C -0.121 4.121 21 C 0.003 3.997 22 Cl -0.052 7.052 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.398 0.602 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 -23.647 1.089 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.000 4.000 11 N -0.371 5.371 12 C 0.297 3.703 13 O -0.420 6.420 14 C -0.153 4.153 15 C -0.087 4.087 16 C 0.105 3.895 17 F -0.107 7.107 18 C -0.169 4.169 19 C -0.100 4.100 20 C -0.140 4.140 21 C -0.024 4.024 22 Cl -0.022 7.022 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.232 0.768 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 3.650 -23.408 1.179 23.720 hybrid contribution -0.243 1.168 -0.096 1.197 sum 3.407 -22.240 1.083 22.526 Atomic orbital electron populations 1.69963 1.06081 1.26762 1.50507 1.25000 0.94895 0.99418 0.95003 0.86460 0.80185 0.83340 0.77615 1.19575 1.20926 1.20926 1.21092 0.93284 0.90380 1.51169 0.92211 1.19331 0.94211 0.91123 0.97868 1.21725 0.96044 0.81400 1.00786 1.46278 1.10527 1.06413 1.73847 1.20145 0.88193 0.84993 0.77014 1.90690 1.13739 1.87631 1.49896 1.20721 0.97593 0.90763 1.06236 1.19156 1.00566 0.98012 0.90994 1.17281 0.96764 0.94860 0.80610 1.91528 1.87789 1.86201 1.45222 1.21207 0.98351 0.97026 1.00272 1.20922 0.98879 0.99482 0.90752 1.21071 0.97251 0.96031 0.99638 1.20522 0.98567 0.96546 0.86786 1.98392 1.87894 1.85399 1.30564 0.92903 0.95901 0.95910 0.92548 0.92587 0.76839 0.87082 0.87362 0.84080 0.84063 0.84231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 9 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 10 C 0.12 2.66 5.61 -4.04 -0.02 2.64 16 11 N -0.72 -12.81 5.56 -60.30 -0.33 -13.14 16 12 C 0.51 8.89 7.82 -10.98 -0.09 8.80 16 13 O -0.54 -11.42 16.03 5.56 0.09 -11.33 16 14 C -0.11 -1.47 5.26 -29.03 -0.15 -1.62 16 15 C -0.09 -1.11 4.38 -104.52 -0.46 -1.57 16 16 C 0.12 1.55 7.24 -39.42 -0.29 1.27 16 17 F -0.13 -1.74 16.47 2.25 0.04 -1.70 16 18 C -0.15 -1.44 10.03 -39.51 -0.40 -1.84 16 19 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 20 C -0.12 -1.14 9.83 -39.54 -0.39 -1.53 16 21 C 0.00 0.03 6.31 -39.51 -0.25 -0.22 16 22 Cl -0.05 -0.61 27.30 -51.86 -1.42 -2.03 16 23 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.40 6.03 8.47 -40.82 -0.35 5.68 16 29 H 0.11 1.23 6.90 -51.93 -0.36 0.88 16 30 H 0.11 1.20 7.63 -51.93 -0.40 0.81 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -32.70 311.49 -7.81 -40.51 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -3.60 Total: 0.31 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -2.99 Total: -8.31 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.40 Total: -38.65 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.42 Total: -2.03 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.70 -7.81 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.568 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds