Wall clock time and date at job start Tue Mar 31 2020 06:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99777 * 2 1 4 4 H 1.48497 * 109.46792 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46980 * 300.00127 * 3 2 1 6 6 H 1.48498 * 109.46996 * 59.99932 * 3 2 1 7 7 C 1.37876 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99652 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47466 * 180.02562 * 9 7 2 11 11 N 1.46497 * 109.46983 * 180.02562 * 10 9 7 12 12 C 1.34780 * 119.99566 * 180.02562 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47064 * 179.97438 * 14 12 11 16 16 C 1.38461 * 120.01707 * 269.72278 * 15 14 12 17 17 F 1.35102 * 120.02152 * 0.02562 * 16 15 14 18 18 C 1.38447 * 119.95943 * 179.71836 * 16 15 14 19 19 C 1.38229 * 119.99957 * 0.53819 * 18 16 15 20 20 C 1.38198 * 120.03839 * 359.75867 * 19 18 16 21 21 C 1.38288 * 120.02170 * 89.99745 * 15 14 12 22 22 Cl 1.73606 * 119.99782 * 0.02706 * 21 15 14 23 23 H 0.96993 * 120.00405 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46613 * 59.99978 * 9 7 2 25 25 H 1.09002 * 109.47120 * 300.00329 * 9 7 2 26 26 H 1.09001 * 109.46832 * 60.00036 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00227 * 10 9 7 28 28 H 0.96995 * 120.00423 * 359.97438 * 11 10 9 29 29 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 30 30 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 31 31 H 1.07995 * 119.99810 * 180.27394 * 18 16 15 32 32 H 1.07998 * 119.98104 * 179.74437 * 19 18 16 33 33 H 1.07998 * 119.98167 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9307 -0.0012 12 6 2.1869 -6.0979 -0.0007 13 8 3.3997 -6.0979 -0.0003 14 6 1.4334 -7.4031 -0.0020 15 6 2.4128 -8.5485 -0.0018 16 6 2.8594 -9.0781 -1.2007 17 9 2.4179 -8.5680 -2.3712 18 6 3.7636 -10.1265 -1.1992 19 6 4.2114 -10.6513 -0.0014 20 6 3.7609 -10.1267 1.1952 21 6 2.8616 -9.0749 1.1956 22 17 2.2963 -8.4168 2.6993 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 0.8895 27 1 2.8721 -3.6043 -0.8905 28 1 0.5430 -4.9308 -0.0011 29 1 0.8058 -7.4611 0.8873 30 1 0.8077 -7.4606 -0.8926 31 1 4.1157 -10.5372 -2.1339 32 1 4.9136 -11.4718 -0.0006 33 1 4.1111 -10.5377 2.1305 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054137915.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:04 Heat of formation + Delta-G solvation = -100.331846 kcal Electronic energy + Delta-G solvation = -19316.166366 eV Core-core repulsion = 15894.700971 eV Total energy + Delta-G solvation = -3421.465395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.03374 -41.03795 -39.81797 -37.50791 -36.62929 -34.83843 -34.09228 -31.66584 -31.42913 -28.89753 -26.55041 -23.91409 -23.53158 -22.69945 -21.44894 -18.82990 -18.64967 -18.06753 -17.94414 -17.19670 -16.66943 -16.48196 -16.47438 -16.25053 -15.76190 -15.09031 -14.81172 -14.55133 -14.52317 -14.24999 -14.00047 -13.42247 -13.23368 -12.96349 -12.69378 -12.54009 -12.45579 -12.38501 -12.25169 -11.92112 -11.68303 -11.47074 -10.97983 -10.62291 -10.04954 -9.87534 -9.73332 -8.25500 -6.36042 -0.04587 0.00542 0.99356 1.40023 1.40882 1.54186 1.60083 2.15987 2.39712 2.56319 3.09163 3.20124 3.36163 3.68310 3.87981 3.89990 4.21257 4.32947 4.36676 4.47556 4.47804 4.53722 4.82796 4.85555 5.02690 5.08720 5.20268 5.26491 5.47204 5.56306 5.70904 5.77087 6.14653 6.57704 6.77125 7.22955 7.33342 8.86564 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.027702 B = 0.003377 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.496572 B = 8288.304550 C = 8731.321993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.142 3.858 11 N -0.717 5.717 12 C 0.512 3.488 13 O -0.579 6.579 14 C -0.103 4.103 15 C -0.111 4.111 16 C 0.097 3.903 17 F -0.142 7.142 18 C -0.148 4.148 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.014 4.014 22 Cl -0.061 7.061 23 H 0.266 0.734 24 H 0.009 0.991 25 H 0.010 0.990 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.412 0.588 29 H 0.128 0.872 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.183 0.817 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -25.009 1.186 25.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.019 3.981 11 N -0.368 5.368 12 C 0.299 3.701 13 O -0.459 6.459 14 C -0.143 4.143 15 C -0.113 4.113 16 C 0.078 3.922 17 F -0.121 7.121 18 C -0.167 4.167 19 C -0.087 4.087 20 C -0.139 4.139 21 C -0.041 4.041 22 Cl -0.032 7.032 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.247 0.753 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.183 0.817 32 H 0.201 0.799 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.593 -24.793 1.276 25.248 hybrid contribution -0.516 1.496 -0.124 1.587 sum 4.076 -23.298 1.152 23.680 Atomic orbital electron populations 1.70061 1.07516 1.27970 1.51014 1.25876 0.95815 1.03101 0.94380 0.85390 0.78933 0.78731 0.77957 1.19025 1.20151 1.20121 1.21489 0.93540 0.91962 1.51533 0.92430 1.19137 0.94205 0.91709 0.96417 1.21206 0.95043 0.82243 0.99647 1.46117 1.11150 1.05504 1.74076 1.20879 0.87942 0.85919 0.75367 1.90661 1.15623 1.88244 1.51422 1.20675 0.97573 0.88179 1.07859 1.19241 1.01644 0.98574 0.91840 1.17652 0.98190 0.96281 0.80083 1.91487 1.88158 1.86622 1.45827 1.21601 0.97079 0.95872 1.02111 1.21427 0.98221 0.99539 0.89464 1.21481 0.96034 0.94963 1.01384 1.20756 0.99614 0.97619 0.86139 1.98384 1.88118 1.85707 1.30950 0.92506 0.97254 0.97206 0.93643 0.93774 0.75259 0.85373 0.85630 0.81709 0.79948 0.81845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.55 -31.04 9.11 25.60 0.23 -30.81 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.14 6.32 5.61 86.38 0.48 6.80 16 11 N -0.72 -25.77 5.56 -463.06 -2.57 -28.34 16 12 C 0.51 17.85 7.82 87.66 0.69 18.53 16 13 O -0.58 -24.72 16.03 -3.03 -0.05 -24.77 16 14 C -0.10 -2.63 5.26 29.10 0.15 -2.48 16 15 C -0.11 -2.80 4.38 -19.80 -0.09 -2.89 16 16 C 0.10 2.34 7.24 22.37 0.16 2.50 16 17 F -0.14 -3.80 16.47 44.97 0.74 -3.06 16 18 C -0.15 -2.49 10.03 22.32 0.22 -2.27 16 19 C -0.07 -0.88 10.04 22.26 0.22 -0.66 16 20 C -0.12 -1.95 9.83 22.29 0.22 -1.73 16 21 C -0.01 -0.33 6.31 22.32 0.14 -0.18 16 22 Cl -0.06 -1.40 27.30 -2.72 -0.07 -1.47 16 23 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 24 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.41 12.50 8.47 -92.71 -0.79 11.71 16 29 H 0.13 2.76 6.90 -2.39 -0.02 2.74 16 30 H 0.13 2.71 7.63 -2.39 -0.02 2.69 16 31 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 33 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -71.04 311.49 3.77 -67.27 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.36 Total: 9.67 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 3.05 Total: -10.99 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -2.29 Total: -82.74 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.05 Total: -24.77 kcal Atomic # 9 Polarization: -3.80 SS G_CDS: 0.74 Total: -3.06 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.47 kcal Total: -71.04 3.77 -67.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054137915.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.057 kcal (2) G-P(sol) polarization free energy of solvation -71.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds