Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99878 * 2 1 4 4 H 1.48495 * 109.46984 * 86.07277 * 3 2 1 5 5 H 1.48504 * 109.46830 * 206.06896 * 3 2 1 6 6 H 1.48494 * 109.47164 * 326.06841 * 3 2 1 7 7 C 1.38954 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99561 * 17.85751 * 7 2 1 9 9 N 1.37092 * 119.99950 * 197.85416 * 7 2 1 10 10 C 1.34774 * 120.00105 * 45.24316 * 9 7 2 11 11 O 1.21297 * 120.00076 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00118 * 179.97438 * 10 9 7 13 13 S 1.81008 * 109.46977 * 180.02562 * 12 10 9 14 14 C 1.76203 * 99.99831 * 180.02562 * 13 12 10 15 15 N 1.30313 * 126.16898 * 0.02562 * 14 13 12 16 16 N 1.26098 * 117.60444 * 179.97438 * 15 14 13 17 17 C 1.29331 * 117.97529 * 0.02562 * 16 15 14 18 18 S 1.76482 * 107.87847 * 359.76096 * 17 16 15 19 19 C 1.46502 * 119.99901 * 225.23927 * 9 7 2 20 20 C 1.52998 * 117.49933 * 3.11141 * 19 9 7 21 21 C 1.52998 * 117.50083 * 294.44773 * 19 9 7 22 22 H 0.96997 * 120.00048 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47350 * 300.00305 * 12 10 9 24 24 H 1.08999 * 109.46690 * 60.00706 * 12 10 9 25 25 H 1.07999 * 126.06361 * 179.97438 * 17 16 15 26 26 H 1.09006 * 115.54609 * 148.78244 * 19 9 7 27 27 H 1.08998 * 117.49885 * 0.02562 * 20 19 9 28 28 H 1.09005 * 117.49402 * 145.02018 * 20 19 9 29 29 H 1.08995 * 117.50067 * 214.97677 * 21 19 9 30 30 H 1.09000 * 117.49776 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4125 2.0944 1.3967 5 1 3.5848 1.4176 -0.6153 6 1 1.4896 2.6273 -0.7815 7 6 2.0089 -1.2033 0.0005 8 1 1.5079 -2.1162 -0.2859 9 7 3.3303 -1.2317 0.3646 10 6 3.7426 -0.5604 1.4581 11 8 2.9445 0.0685 2.1204 12 6 5.1951 -0.5920 1.8585 13 16 5.4297 0.3969 3.3563 14 6 7.1639 0.1909 3.5905 15 7 7.9650 -0.5040 2.8332 16 7 9.1844 -0.5414 3.1521 17 6 9.5562 0.1097 4.2059 18 16 8.1304 0.8938 4.8894 19 6 4.2942 -1.9918 -0.4351 20 6 3.7782 -2.6723 -1.7045 21 6 4.1347 -3.5129 -0.4759 22 1 -0.4850 0.8400 -0.0004 23 1 5.4962 -1.6215 2.0525 24 1 5.8032 -0.1812 1.0526 25 1 10.5615 0.1667 4.5963 26 1 5.3079 -1.5914 -0.4551 27 1 2.7217 -2.5541 -1.9450 28 1 4.4526 -2.7199 -2.5596 29 1 5.0432 -4.1132 -0.5232 30 1 3.3128 -3.9481 0.0926 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060579118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = 58.161567 kcal Electronic energy + Delta-G solvation = -17742.062040 eV Core-core repulsion = 14792.185974 eV Total energy + Delta-G solvation = -2949.876066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.035 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.94530 -40.99315 -38.15316 -35.03155 -33.60341 -32.77085 -31.19213 -27.87207 -26.64642 -23.45145 -23.00459 -22.49473 -21.58572 -20.36086 -19.07164 -18.43574 -17.84472 -17.45534 -16.83097 -16.55057 -16.18396 -15.64108 -15.37795 -15.03610 -14.73891 -14.49679 -14.15264 -14.03168 -13.37777 -13.02243 -12.56179 -12.21870 -12.18824 -12.11012 -11.82764 -11.73346 -11.55035 -11.35883 -11.25988 -10.81808 -10.73841 -10.56847 -9.46281 -8.94656 -8.47704 -6.26096 -0.75301 -0.53335 0.11243 0.43229 0.80234 1.16158 1.30781 1.44987 1.46070 1.72206 2.34474 2.48923 2.92218 3.14380 3.44244 3.58095 3.85498 3.90264 4.03297 4.14482 4.23388 4.29270 4.50742 4.86922 4.93739 5.20438 5.44139 5.64317 5.78742 6.60151 6.77804 7.22535 7.42050 7.68980 8.61636 Molecular weight = 285.03amu Principal moments of inertia in cm(-1) A = 0.022464 B = 0.005523 C = 0.004715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.144429 B = 5068.901114 C = 5936.870391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.050 3.950 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.261 1.261 6 H -0.297 1.297 7 C -0.336 4.336 8 H 0.072 0.928 9 N -0.438 5.438 10 C 0.462 3.538 11 O -0.574 6.574 12 C -0.125 4.125 13 S 0.078 5.922 14 C -0.032 4.032 15 N -0.297 5.297 16 N -0.287 5.287 17 C 0.020 3.980 18 S 0.147 5.853 19 C 0.032 3.968 20 C -0.165 4.165 21 C -0.175 4.175 22 H 0.274 0.726 23 H 0.137 0.863 24 H 0.128 0.872 25 H 0.266 0.734 26 H 0.143 0.857 27 H 0.081 0.919 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.784 -0.048 6.568 21.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.155 4.155 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.185 1.185 6 H -0.225 1.225 7 C -0.464 4.464 8 H 0.090 0.910 9 N -0.159 5.159 10 C 0.251 3.749 11 O -0.459 6.459 12 C -0.278 4.278 13 S 0.308 5.692 14 C -0.419 4.419 15 N -0.139 5.139 16 N -0.121 5.121 17 C -0.284 4.284 18 S 0.384 5.616 19 C -0.072 4.072 20 C -0.203 4.203 21 C -0.213 4.213 22 H 0.084 0.916 23 H 0.155 0.845 24 H 0.146 0.854 25 H 0.282 0.718 26 H 0.160 0.840 27 H 0.099 0.901 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.457 0.748 7.226 20.769 hybrid contribution 0.430 -0.003 -0.812 0.919 sum 19.887 0.744 6.414 20.909 Atomic orbital electron populations 1.69805 1.07913 1.28840 1.47653 1.25883 0.95377 1.01843 0.92416 0.85804 0.79305 0.79969 0.77776 1.19604 1.18473 1.22533 1.18542 0.84617 0.94659 1.48537 0.91020 1.43132 1.07115 1.44724 1.20901 1.20128 0.89241 0.83962 0.81537 1.90588 1.56064 1.45282 1.53939 1.23741 0.97679 1.06305 1.00092 1.86663 0.89424 1.61257 1.31845 1.31933 1.07499 1.02725 0.99791 1.71758 0.97118 1.19153 1.25891 1.70681 1.07101 1.19325 1.15008 1.31958 1.05656 0.96525 0.94259 1.85659 1.00689 1.48492 1.26743 1.22266 0.93947 0.92314 0.98702 1.23205 1.02593 1.02453 0.92031 1.23332 1.03829 0.92821 1.01339 0.91607 0.84520 0.85394 0.71843 0.84014 0.90086 0.85522 0.85187 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.16 13.96 21.66 0.30 -55.86 16 2 C 0.05 2.94 4.88 84.93 0.41 3.36 16 3 Si 0.94 49.19 24.91 68.60 1.71 50.90 16 4 H -0.27 -14.81 6.38 99.48 0.63 -14.18 16 5 H -0.26 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 7 C -0.34 -18.77 8.36 84.04 0.70 -18.07 16 8 H 0.07 4.28 7.46 -2.91 -0.02 4.25 16 9 N -0.44 -20.35 2.45 -613.12 -1.50 -21.85 16 10 C 0.46 21.21 5.89 87.66 0.52 21.72 16 11 O -0.57 -31.11 11.68 -3.08 -0.04 -31.14 16 12 C -0.13 -4.32 4.32 71.24 0.31 -4.02 16 13 S 0.08 2.57 21.45 -56.49 -1.21 1.36 16 14 C -0.03 -0.87 7.85 130.47 1.02 0.15 16 15 N -0.30 -8.49 10.96 -54.83 -0.60 -9.09 16 16 N -0.29 -7.04 11.55 -57.40 -0.66 -7.70 16 17 C 0.02 0.31 12.68 130.61 1.66 1.97 16 18 S 0.15 2.64 23.54 -56.49 -1.33 1.31 16 19 C 0.03 1.11 5.87 44.99 0.26 1.37 16 20 C -0.17 -5.28 9.81 30.62 0.30 -4.98 16 21 C -0.17 -5.22 10.36 30.62 0.32 -4.90 16 22 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 23 H 0.14 4.18 8.11 -2.40 -0.02 4.16 16 24 H 0.13 3.99 7.56 -2.40 -0.02 3.97 16 25 H 0.27 1.03 8.06 -2.91 -0.02 1.01 16 26 H 0.14 4.03 6.96 -2.38 -0.02 4.01 16 27 H 0.08 3.15 6.74 -2.39 -0.02 3.13 16 28 H 0.13 3.07 8.14 -2.38 -0.02 3.05 16 29 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -74.85 288.72 3.28 -71.58 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: 1.10 Total: 3.89 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.50 Total: -3.39 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -2.46 Total: -94.50 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.04 Total: -31.14 kcal Atomic # 14 Polarization: 49.19 SS G_CDS: 1.71 Total: 50.90 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -2.54 Total: 2.67 kcal Total: -74.85 3.28 -71.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060579118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.740 kcal (2) G-P(sol) polarization free energy of solvation -74.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds