Wall clock time and date at job start Tue Mar 31 2020 05:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48500 * 109.46992 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47196 * 29.99619 * 3 2 1 6 6 H 1.48496 * 109.47235 * 149.99639 * 3 2 1 7 7 C 1.37875 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46823 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.34798 * 117.00191 * 179.97438 * 12 11 10 14 14 O 1.21552 * 119.99959 * 359.97438 * 13 12 11 15 15 C 1.47035 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.36103 * 123.47775 * 0.24897 * 15 13 12 17 17 S 1.70451 * 110.80622 * 180.25185 * 16 15 13 18 18 C 1.75498 * 92.45430 * 359.72183 * 17 16 15 19 19 N 1.48032 * 124.70131 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00130 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99498 * 359.97438 * 19 18 17 22 22 C 1.32742 * 110.60127 * 359.97438 * 18 17 16 23 23 H 0.97000 * 120.00404 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47598 * 59.99807 * 9 7 2 25 25 H 1.09004 * 109.47136 * 299.99797 * 9 7 2 26 26 H 1.08997 * 109.47195 * 59.99479 * 10 9 7 27 27 H 1.08998 * 109.46825 * 299.99388 * 10 9 7 28 28 H 1.08997 * 109.47790 * 59.99685 * 11 10 9 29 29 H 1.09003 * 109.47488 * 299.99263 * 11 10 9 30 30 H 1.07998 * 124.59463 * 359.93933 * 16 15 13 31 31 H 1.08002 * 123.45319 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 8 2.4238 -6.0907 0.0018 13 6 1.9086 -7.3363 0.0019 14 8 0.7036 -7.4956 0.0019 15 6 2.8044 -8.5023 0.0019 16 6 4.1620 -8.4061 0.0068 17 16 4.8786 -9.9526 -0.0018 18 6 3.3193 -10.7580 -0.0037 19 7 3.1290 -12.2260 -0.0102 20 8 2.0046 -12.6944 -0.0106 21 8 4.0968 -12.9655 -0.0151 22 6 2.3341 -9.8683 0.0025 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6038 0.8922 27 1 2.8726 -3.6047 -0.8878 28 1 0.8546 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 4.7108 -7.4760 0.0101 31 1 1.2883 -10.1381 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061521081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:04 Heat of formation + Delta-G solvation = -66.892086 kcal Electronic energy + Delta-G solvation = -18598.600737 eV Core-core repulsion = 15168.256316 eV Total energy + Delta-G solvation = -3430.344421 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.48456 -40.59532 -38.21441 -36.95214 -36.52470 -34.12491 -32.07216 -31.52225 -27.49555 -27.06569 -25.64205 -23.40309 -22.20793 -20.58734 -20.36782 -19.98566 -18.76779 -18.03526 -17.98245 -16.86528 -16.66875 -16.56031 -16.10566 -14.54644 -14.51044 -14.34626 -13.84872 -13.68663 -13.34911 -12.31232 -12.30449 -12.20059 -12.04464 -11.96646 -11.78576 -11.58904 -11.05771 -10.86376 -10.78246 -10.60930 -10.56724 -10.32967 -9.86641 -9.62895 -9.46111 -9.25926 -8.46527 -6.11118 -4.14794 -0.82240 -0.07943 0.29787 0.70352 1.05210 1.16145 2.52975 2.60526 3.25345 3.32015 3.34723 3.93562 4.19652 4.32494 4.38392 4.73364 4.86416 5.12438 5.24954 5.41538 5.43514 5.76114 5.84610 6.22072 6.39164 6.63544 6.84116 7.12828 7.50358 7.58258 7.60500 7.86340 8.26478 8.91311 9.50015 11.00253 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.048679 B = 0.002508 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.057731 B =11160.234952 C =11709.526594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.351 6.351 13 C 0.524 3.476 14 O -0.497 6.497 15 C -0.151 4.151 16 C -0.148 4.148 17 S 0.343 5.657 18 C -0.207 4.207 19 N 0.061 4.939 20 O -0.139 6.139 21 O -0.152 6.152 22 C 0.020 3.980 23 H 0.262 0.738 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.207 0.793 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -20.760 0.015 23.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.268 6.268 13 C 0.366 3.634 14 O -0.386 6.386 15 C -0.166 4.166 16 C -0.287 4.287 17 S 0.609 5.391 18 C -0.407 4.407 19 N 0.583 4.417 20 O -0.357 6.357 21 O -0.368 6.368 22 C -0.014 4.014 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.224 0.776 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 11.548 -20.468 0.019 23.500 hybrid contribution -1.377 1.264 -0.006 1.869 sum 10.171 -19.204 0.013 21.731 Atomic orbital electron populations 1.69957 1.06104 1.26887 1.50296 1.25032 0.94887 0.99414 0.95106 0.86538 0.79786 0.83183 0.78174 1.20575 1.21139 1.19817 1.21141 0.93089 0.90623 1.51325 0.92431 1.19057 0.93811 0.90653 0.97794 1.21793 1.00038 0.90767 1.02038 1.23649 0.91108 0.82920 1.02639 1.86525 1.42639 1.14403 1.83201 1.19934 0.86361 0.83347 0.73781 1.90902 1.15577 1.86885 1.45195 1.19165 0.92194 0.91487 1.13751 1.26692 0.98542 1.05918 0.97598 1.83614 0.99398 0.90950 1.65117 1.25865 1.02489 0.85519 1.26817 1.42459 1.00837 1.00810 0.97560 1.94611 1.10269 1.77795 1.53070 1.94589 1.32370 1.55885 1.53924 1.21296 1.02012 0.89117 0.88939 0.92799 0.96156 0.96154 0.92035 0.92048 0.91075 0.91069 0.77624 0.79861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.55 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.08 5.53 -26.73 -0.15 -2.22 16 11 C 0.07 1.16 5.48 37.16 0.20 1.36 16 12 O -0.35 -5.06 9.87 -40.76 -0.40 -5.47 16 13 C 0.52 7.11 7.92 34.30 0.27 7.39 16 14 O -0.50 -8.15 16.59 -19.31 -0.32 -8.47 16 15 C -0.15 -1.49 5.98 -104.65 -0.63 -2.11 16 16 C -0.15 -1.00 10.56 29.97 0.32 -0.68 16 17 S 0.34 2.02 22.78 -107.50 -2.45 -0.43 16 18 C -0.21 -1.88 7.44 -11.50 -0.09 -1.97 16 19 N 0.06 0.67 4.45 33.26 0.15 0.82 16 20 O -0.14 -1.67 18.91 -29.46 -0.56 -2.23 16 21 O -0.15 -1.72 19.05 -29.46 -0.56 -2.28 16 22 C 0.02 0.19 9.69 -39.01 -0.38 -0.19 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.21 0.99 8.02 -52.49 -0.42 0.57 16 31 H 0.18 1.69 8.01 -52.49 -0.42 1.27 16 LS Contribution 308.86 15.07 4.65 4.65 Total: -1.00 -31.35 308.86 -7.69 -39.04 By element: Atomic # 1 Polarization: -2.21 SS G_CDS: -2.92 Total: -5.12 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.00 Total: -11.02 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.88 Total: -24.63 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -1.84 Total: -18.44 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.45 Total: -0.43 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.35 -7.69 -39.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061521081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.854 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds