Wall clock time and date at job start Tue Mar 31 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99871 * 2 1 4 4 H 1.48500 * 109.46992 * 269.99938 * 3 2 1 5 5 H 1.48501 * 109.47196 * 29.99619 * 3 2 1 6 6 H 1.48496 * 109.47235 * 149.99639 * 3 2 1 7 7 C 1.37875 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99735 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99907 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.46823 * 180.02562 * 10 9 7 12 12 O 1.45199 * 109.47067 * 179.97438 * 11 10 9 13 13 C 1.34798 * 117.00191 * 179.97438 * 12 11 10 14 14 O 1.21552 * 119.99959 * 359.97438 * 13 12 11 15 15 C 1.47035 * 119.99870 * 179.97438 * 13 12 11 16 16 C 1.36103 * 123.47775 * 0.24897 * 15 13 12 17 17 S 1.70451 * 110.80622 * 180.25185 * 16 15 13 18 18 C 1.75498 * 92.45430 * 359.72183 * 17 16 15 19 19 N 1.48032 * 124.70131 * 180.02562 * 18 17 16 20 20 O 1.21799 * 120.00130 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99498 * 359.97438 * 19 18 17 22 22 C 1.32742 * 110.60127 * 359.97438 * 18 17 16 23 23 H 0.97000 * 120.00404 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47598 * 59.99807 * 9 7 2 25 25 H 1.09004 * 109.47136 * 299.99797 * 9 7 2 26 26 H 1.08997 * 109.47195 * 59.99479 * 10 9 7 27 27 H 1.08998 * 109.46825 * 299.99388 * 10 9 7 28 28 H 1.08997 * 109.47790 * 59.99685 * 11 10 9 29 29 H 1.09003 * 109.47488 * 299.99263 * 11 10 9 30 30 H 1.07998 * 124.59463 * 359.93933 * 16 15 13 31 31 H 1.08002 * 123.45319 * 179.97438 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4803 -4.9870 0.0012 12 8 2.4238 -6.0907 0.0018 13 6 1.9086 -7.3363 0.0019 14 8 0.7036 -7.4956 0.0019 15 6 2.8044 -8.5023 0.0019 16 6 4.1620 -8.4061 0.0068 17 16 4.8786 -9.9526 -0.0018 18 6 3.3193 -10.7580 -0.0037 19 7 3.1290 -12.2260 -0.0102 20 8 2.0046 -12.6944 -0.0106 21 8 4.0968 -12.9655 -0.0151 22 6 2.3341 -9.8683 0.0025 23 1 -0.4851 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8903 26 1 2.8713 -3.6038 0.8922 27 1 2.8726 -3.6047 -0.8878 28 1 0.8546 -5.0450 -0.8894 29 1 0.8527 -5.0447 0.8905 30 1 4.7108 -7.4760 0.0101 31 1 1.2883 -10.1381 0.0022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061521081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:03 Heat of formation + Delta-G solvation = -84.056216 kcal Electronic energy + Delta-G solvation = -18599.345030 eV Core-core repulsion = 15168.256316 eV Total energy + Delta-G solvation = -3431.088714 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.30194 -41.67989 -39.04604 -37.83743 -37.68000 -35.95513 -33.74563 -32.48494 -29.16662 -27.84151 -26.76558 -24.99599 -23.19931 -22.18921 -21.18026 -20.94773 -19.54939 -18.99170 -18.84574 -18.49981 -17.77643 -17.63660 -17.33585 -16.49305 -15.80993 -15.22709 -14.62724 -14.62171 -14.44636 -14.10495 -13.81422 -13.77930 -12.92125 -12.84751 -12.83822 -12.63606 -12.52353 -12.47259 -12.39950 -12.12491 -11.91077 -11.49285 -11.44551 -11.25209 -10.99484 -10.57542 -10.05065 -8.22155 -6.33555 -1.55317 -0.70613 -0.50340 0.05212 0.33462 0.34322 1.41225 1.43020 1.46526 1.54525 1.64005 2.41029 3.12307 3.27518 3.39618 3.57231 3.88429 3.99142 4.02939 4.27134 4.38038 4.41814 4.79764 4.83575 4.93377 5.07054 5.28295 5.49421 5.64013 5.80345 6.18204 6.24488 6.47553 6.83142 7.36332 8.90009 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.048679 B = 0.002508 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.057731 B =11160.234952 C =11709.526594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.092 4.092 11 C 0.079 3.921 12 O -0.343 6.343 13 C 0.527 3.473 14 O -0.535 6.535 15 C -0.179 4.179 16 C -0.125 4.125 17 S 0.442 5.558 18 C -0.230 4.230 19 N 0.062 4.938 20 O -0.179 6.179 21 O -0.146 6.146 22 C 0.019 3.981 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.004 1.004 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.234 0.766 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.786 -20.698 0.016 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.086 0.914 9 C -0.013 4.013 10 C -0.130 4.130 11 C 0.006 3.994 12 O -0.259 6.259 13 C 0.371 3.629 14 O -0.426 6.426 15 C -0.194 4.194 16 C -0.265 4.265 17 S 0.708 5.292 18 C -0.429 4.429 19 N 0.580 4.420 20 O -0.389 6.389 21 O -0.365 6.365 22 C -0.015 4.015 23 H 0.073 0.927 24 H 0.015 0.985 25 H 0.015 0.985 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.250 0.750 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 14.839 -20.447 0.019 25.264 hybrid contribution -2.257 1.180 -0.006 2.547 sum 12.582 -19.266 0.013 23.011 Atomic orbital electron populations 1.70097 1.07920 1.27910 1.51558 1.26008 0.95750 1.03544 0.94698 0.85407 0.78702 0.78217 0.78491 1.19797 1.21074 1.18380 1.21630 0.93822 0.91780 1.50666 0.91429 1.18950 0.94361 0.92558 0.95478 1.21459 0.98706 0.89888 1.02945 1.23241 0.90890 0.83092 1.02211 1.86482 1.41535 1.14427 1.83501 1.20473 0.86522 0.83525 0.72377 1.90889 1.17376 1.87140 1.47192 1.18748 0.92832 0.89812 1.17962 1.27109 0.97444 1.08118 0.93855 1.83468 0.95747 0.88294 1.61707 1.26028 1.04739 0.84066 1.28106 1.42664 1.00523 1.01705 0.97062 1.94620 1.10621 1.78620 1.55034 1.94557 1.32152 1.56720 1.53117 1.21201 1.02034 0.89298 0.88938 0.92733 0.98537 0.98534 0.91041 0.91037 0.91642 0.91637 0.74996 0.80850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 42.67 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.19 4.97 29.85 0.15 1.34 16 10 C -0.09 -3.46 5.53 30.59 0.17 -3.29 16 11 C 0.08 2.63 5.48 71.98 0.39 3.02 16 12 O -0.34 -9.42 9.87 -57.09 -0.56 -9.99 16 13 C 0.53 14.00 7.92 70.13 0.56 14.55 16 14 O -0.53 -17.98 16.59 19.67 0.33 -17.65 16 15 C -0.18 -3.23 5.98 -19.88 -0.12 -3.35 16 16 C -0.13 -1.22 10.56 67.32 0.71 -0.51 16 17 S 0.44 3.43 22.78 -56.49 -1.29 2.14 16 18 C -0.23 -3.78 7.44 80.75 0.60 -3.18 16 19 N 0.06 1.33 4.45 -48.69 -0.22 1.11 16 20 O -0.18 -4.43 18.91 18.89 0.36 -4.07 16 21 O -0.15 -3.08 19.05 18.88 0.36 -2.72 16 22 C 0.02 0.35 9.69 22.68 0.22 0.57 16 23 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.23 1.04 8.02 -2.91 -0.02 1.02 16 31 H 0.17 3.41 8.01 -2.91 -0.02 3.38 16 Total: -1.00 -69.25 308.86 5.83 -63.42 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 1.16 Total: -1.83 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: 3.37 Total: -19.62 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.07 Total: -54.37 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: 0.48 Total: -34.44 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.29 Total: 2.14 kcal Total: -69.25 5.83 -63.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061521081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.632 kcal (2) G-P(sol) polarization free energy of solvation -69.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds