Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.35512 * 117.00005 * 150.00110 * 4 2 1 6 6 N 1.32430 * 119.52152 * 359.72355 * 5 4 2 7 7 C 1.31631 * 121.82051 * 179.75387 * 6 5 4 8 8 C 1.39647 * 120.63796 * 0.52320 * 7 6 5 9 9 C 1.47433 * 120.50223 * 179.76602 * 8 7 6 10 10 O 1.21532 * 119.99576 * 179.97438 * 9 8 7 11 11 O 1.34758 * 119.99871 * 359.97438 * 9 8 7 12 12 C 1.34871 * 116.99991 * 179.97438 * 11 9 8 13 13 H 1.07996 * 119.99638 * 359.97438 * 12 11 9 14 14 C 1.38790 * 119.99971 * 180.02562 * 12 11 9 15 15 N 1.31427 * 120.00260 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99749 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47374 * 89.99961 * 16 14 12 18 18 H 1.48505 * 109.46964 * 209.99719 * 16 14 12 19 19 H 1.48499 * 109.47076 * 329.99230 * 16 14 12 20 20 C 1.40338 * 118.99286 * 359.74652 * 8 7 6 21 21 C 1.38049 * 118.34156 * 359.97438 * 20 8 7 22 22 Cl 1.73605 * 120.37726 * 179.97438 * 21 20 8 23 23 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 24 24 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 25 25 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 27 27 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 29 29 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 30 30 H 1.07992 * 119.68136 * 180.26632 * 7 6 5 31 31 H 0.97000 * 120.00400 * 180.02562 * 15 14 12 32 32 H 1.08003 * 120.83013 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1972 -1.3123 1.0655 6 7 3.8531 -1.2914 -0.0848 7 6 5.0150 -1.8921 -0.2323 8 6 5.5959 -2.5886 0.8296 9 6 6.8950 -3.2647 0.6596 10 8 7.3924 -3.8679 1.5901 11 8 7.5308 -3.2138 -0.5275 12 6 8.7153 -3.8528 -0.6155 13 1 9.1129 -4.3736 0.2429 14 6 9.4236 -3.8400 -1.8090 15 7 8.9399 -3.2057 -2.8535 16 14 11.0638 -4.7256 -1.9311 17 1 10.8385 -6.1269 -2.3676 18 1 11.9283 -4.0322 -2.9196 19 1 11.7286 -4.7214 -0.6033 20 6 4.9245 -2.6349 2.0611 21 6 3.7113 -1.9854 2.1709 22 17 2.8353 -2.0091 3.6695 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 5.5220 -1.8494 -1.1848 31 1 9.4347 -3.1971 -3.6878 32 1 5.3468 -3.1647 2.9022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062471904.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -111.553568 kcal Electronic energy + Delta-G solvation = -19629.855108 eV Core-core repulsion = 16195.530313 eV Total energy + Delta-G solvation = -3434.324795 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.11418 -40.93571 -39.35053 -37.74036 -37.31187 -34.42337 -34.25903 -33.66894 -31.65470 -28.17808 -27.73756 -25.65408 -25.26608 -22.68101 -21.98544 -19.97245 -19.79371 -19.16287 -18.17659 -17.10804 -17.07896 -16.57326 -16.32664 -16.18762 -15.62110 -15.48352 -14.94823 -14.52620 -14.28623 -14.07645 -13.61877 -13.37632 -13.29456 -13.20065 -13.10354 -12.87789 -12.43417 -12.34166 -12.17344 -12.07033 -11.93554 -11.78805 -11.42981 -10.99138 -10.83919 -10.71299 -9.69926 -8.57492 -6.33764 -0.61348 -0.26356 0.81132 1.35161 1.37098 1.53710 1.64638 1.68051 2.07165 2.46075 2.58862 2.96575 3.00341 3.48929 3.67034 3.89086 3.93327 4.01832 4.03589 4.27276 4.59983 4.69813 4.75024 4.85096 4.88915 4.94280 5.05383 5.16751 5.23329 5.27790 5.78161 5.95117 6.36212 6.55650 6.87247 7.65775 8.62256 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.004100 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.892221 B = 6827.273608 C = 7839.684287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.067 3.933 3 C -0.165 4.165 4 O -0.288 6.288 5 C 0.356 3.644 6 N -0.528 5.528 7 C 0.206 3.794 8 C -0.189 4.189 9 C 0.445 3.555 10 O -0.576 6.576 11 O -0.225 6.225 12 C -0.418 4.418 13 H 0.086 0.914 14 C 0.002 3.998 15 N -0.892 5.892 16 Si 1.017 2.983 17 H -0.260 1.260 18 H -0.260 1.260 19 H -0.263 1.263 20 C 0.024 3.976 21 C -0.121 4.121 22 Cl -0.024 7.024 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.181 0.819 31 H 0.281 0.719 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 7.070 4.628 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.222 4.222 4 O -0.194 6.194 5 C 0.176 3.824 6 N -0.252 5.252 7 C 0.048 3.952 8 C -0.193 4.193 9 C 0.294 3.706 10 O -0.475 6.475 11 O -0.133 6.133 12 C -0.493 4.493 13 H 0.104 0.896 14 C -0.200 4.200 15 N -0.528 5.528 16 Si 0.836 3.164 17 H -0.185 1.185 18 H -0.184 1.184 19 H -0.188 1.188 20 C -0.001 4.001 21 C -0.151 4.151 22 Cl 0.005 6.995 23 H 0.090 0.910 24 H 0.119 0.881 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.088 0.912 30 H 0.198 0.802 31 H 0.091 0.909 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.637 7.474 4.273 17.851 hybrid contribution 1.237 -0.848 0.578 1.607 sum -14.400 6.627 4.851 16.577 Atomic orbital electron populations 1.21914 0.90276 1.03427 1.04404 1.22800 0.96366 0.93095 0.86578 1.22208 1.01057 0.94923 1.04058 1.86348 1.29630 1.63230 1.40213 1.19841 0.86609 0.87888 0.88103 1.67596 1.10331 1.24490 1.22782 1.23009 0.87773 0.85877 0.98494 1.19910 0.95626 1.07040 0.96752 1.20960 0.86146 0.81394 0.82067 1.90613 1.68671 1.45808 1.42409 1.83885 1.33182 1.63936 1.32302 1.21514 0.94727 1.33114 0.99955 0.89636 1.26512 1.03295 0.97134 0.93052 1.70037 1.40329 1.39926 1.02540 0.84626 0.74592 0.78119 0.79086 1.18482 1.18390 1.18754 1.21441 0.89966 0.91867 0.96836 1.20558 0.96670 1.07942 0.89891 1.98364 1.74705 1.97586 1.28883 0.90997 0.88116 0.91973 0.89793 0.93832 0.88764 0.91247 0.80221 0.90907 0.81599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.56 71.98 0.69 -1.33 16 2 C 0.07 1.36 3.11 30.60 0.10 1.45 16 3 C -0.17 -2.99 9.53 71.98 0.69 -2.30 16 4 O -0.29 -7.37 9.21 -88.14 -0.81 -8.19 16 5 C 0.36 10.59 7.46 84.85 0.63 11.22 16 6 N -0.53 -16.81 8.60 -307.63 -2.65 -19.46 16 7 C 0.21 7.38 10.78 85.06 0.92 8.30 16 8 C -0.19 -7.48 5.89 -20.00 -0.12 -7.60 16 9 C 0.45 22.46 7.83 70.24 0.55 23.01 16 10 O -0.58 -31.33 15.66 19.73 0.31 -31.02 16 11 O -0.23 -12.81 9.01 10.91 0.10 -12.71 16 12 C -0.42 -24.56 9.65 67.95 0.66 -23.90 16 13 H 0.09 5.10 6.86 -2.91 -0.02 5.08 16 14 C 0.00 0.10 5.49 84.89 0.47 0.56 16 15 N -0.89 -50.35 13.67 21.63 0.30 -50.05 16 16 Si 1.02 41.86 29.55 68.60 2.03 43.89 16 17 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 18 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 19 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 20 C 0.02 0.82 9.50 22.74 0.22 1.04 16 21 C -0.12 -3.60 6.35 22.47 0.14 -3.46 16 22 Cl -0.02 -0.61 28.52 -2.72 -0.08 -0.68 16 23 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.90 6.97 -2.39 -0.02 1.88 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.18 6.67 7.61 -2.91 -0.02 6.65 16 31 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.17 5.36 7.73 -2.91 -0.02 5.34 16 Total: -1.00 -66.43 307.04 5.28 -61.15 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.15 Total: 10.08 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 4.93 Total: 7.00 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -2.35 Total: -69.51 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.40 Total: -51.92 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -66.43 5.28 -61.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062471904.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.404 kcal (2) G-P(sol) polarization free energy of solvation -66.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds