Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99874 * 2 1 4 4 H 1.48496 * 109.46714 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00286 * 3 2 1 7 7 C 1.37878 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40381 * 66.46096 * 9 7 2 11 11 O 1.42092 * 106.40217 * 293.53401 * 9 7 2 12 12 N 1.65601 * 107.21504 * 179.97438 * 9 7 2 13 13 C 1.47225 * 121.33797 * 89.99863 * 12 9 7 14 14 C 1.52785 * 107.92003 * 115.80977 * 13 12 9 15 15 C 1.50604 * 110.86616 * 47.45233 * 14 13 12 16 16 C 1.38949 * 117.59905 * 160.07887 * 15 14 13 17 17 C 1.38132 * 120.56522 * 179.27695 * 16 15 14 18 18 F 1.35097 * 120.11243 * 180.02562 * 17 16 15 19 19 C 1.38485 * 119.77152 * 0.03003 * 17 16 15 20 20 C 1.37925 * 119.68864 * 0.21407 * 19 17 16 21 21 C 1.37685 * 122.86348 * 339.79716 * 15 14 13 22 22 C 1.46685 * 121.33543 * 270.02101 * 12 9 7 23 23 H 0.97000 * 120.00258 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.76825 * 356.20584 * 13 12 9 25 25 H 1.08993 * 109.81763 * 235.44151 * 13 12 9 26 26 H 1.09000 * 109.19900 * 287.09646 * 14 13 12 27 27 H 1.08999 * 109.20088 * 167.81280 * 14 13 12 28 28 H 1.07997 * 119.71824 * 359.30007 * 16 15 14 29 29 H 1.07996 * 120.15966 * 180.48541 * 19 17 16 30 30 H 1.08000 * 119.72430 * 179.97438 * 20 19 17 31 31 H 1.08998 * 109.43988 * 104.38322 * 22 12 9 32 32 H 1.08995 * 109.43617 * 344.50562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4520 -2.7955 -1.2494 11 8 0.4512 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 2.7686 -4.4972 1.2580 14 6 2.3414 -5.9623 1.3304 15 6 2.6248 -6.6685 0.0307 16 6 2.6981 -8.0559 0.0546 17 6 2.9401 -8.7666 -1.1048 18 9 3.0090 -10.1154 -1.0712 19 6 3.1121 -8.0917 -2.3018 20 6 3.0445 -6.7143 -2.3253 21 6 2.8048 -5.9997 -1.1592 22 6 2.7670 -4.4948 -1.2524 23 1 -0.4850 0.8400 0.0004 24 1 2.3549 -3.9502 2.1052 25 1 3.8563 -4.4292 1.2711 26 1 1.2732 -6.0143 1.5410 27 1 2.8887 -6.4560 2.1334 28 1 2.5642 -8.5831 0.9876 29 1 3.2938 -8.6415 -3.2134 30 1 3.1789 -6.1874 -3.2584 31 1 3.7740 -4.1170 -1.4291 32 1 2.1192 -4.1986 -2.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092557334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -114.342268 kcal Electronic energy + Delta-G solvation = -20349.629479 eV Core-core repulsion = 16929.600253 eV Total energy + Delta-G solvation = -3420.029226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.062 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.88513 -39.74493 -36.04882 -35.36164 -34.01821 -33.11848 -32.71178 -30.55961 -29.18850 -26.16129 -24.64995 -23.55356 -22.44504 -20.20663 -18.75803 -17.56067 -17.01469 -16.52529 -15.94179 -15.92028 -15.59390 -15.00338 -14.76888 -14.46453 -13.96820 -13.85775 -13.42179 -13.28111 -13.24056 -12.57360 -12.12807 -12.01092 -11.93800 -11.54773 -11.24063 -11.21189 -11.15295 -10.76568 -10.64935 -10.34961 -10.26833 -10.12428 -9.27345 -9.04636 -8.86195 -8.45761 -8.26175 -6.73317 -5.36543 1.17695 1.22447 2.16654 3.06185 3.10875 3.16105 3.56287 4.01773 4.23049 4.45165 4.60086 4.67710 4.80084 4.91131 5.11800 5.26910 5.45552 5.47207 5.57186 5.75190 5.85516 5.89532 5.94859 6.02051 6.04601 6.13583 6.21529 6.29385 6.40395 6.50141 6.83050 6.93508 7.28820 7.45623 7.92871 8.85052 10.20337 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.004603 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.454108 B = 6080.987467 C = 6258.152626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.133 3.867 3 Si 0.921 3.079 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.264 1.264 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.716 3.284 10 O -1.002 7.002 11 O -1.001 7.001 12 N -1.013 6.013 13 C 0.126 3.874 14 C -0.101 4.101 15 C -0.036 4.036 16 C -0.157 4.157 17 C 0.089 3.911 18 F -0.145 7.145 19 C -0.158 4.158 20 C -0.087 4.087 21 C -0.090 4.090 22 C 0.161 3.839 23 H 0.292 0.708 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.076 0.924 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -11.468 -1.104 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.188 1.188 7 C -1.155 5.155 8 H 0.121 0.879 9 S 2.818 3.182 10 O -0.992 6.992 11 O -0.991 6.991 12 N -0.847 5.847 13 C 0.000 4.000 14 C -0.139 4.139 15 C -0.036 4.036 16 C -0.176 4.176 17 C 0.070 3.930 18 F -0.124 7.124 19 C -0.177 4.177 20 C -0.105 4.105 21 C -0.092 4.092 22 C 0.035 3.965 23 H 0.102 0.898 24 H 0.118 0.882 25 H 0.084 0.916 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.094 0.906 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.031 -11.564 -1.093 13.577 hybrid contribution 1.012 0.801 -0.054 1.292 sum 8.043 -10.762 -1.148 13.485 Atomic orbital electron populations 1.69884 1.06791 1.30924 1.39906 1.24758 0.94473 1.00821 0.88477 0.86191 0.79882 0.79633 0.79808 1.18835 1.20091 1.18828 1.30585 1.06127 1.11734 1.67042 0.87926 1.00509 0.72001 0.72856 0.72861 1.93347 1.72653 1.87493 1.45734 1.93352 1.72500 1.87517 1.45719 1.58339 1.62449 1.54360 1.09582 1.21197 0.98992 0.92474 0.87348 1.20917 1.03044 0.96381 0.93590 1.19405 0.96787 0.92028 0.95388 1.21143 1.04593 0.94209 0.97651 1.17569 1.03753 0.76663 0.95054 1.91472 1.94088 1.29503 1.97336 1.21008 1.04724 0.95025 0.96919 1.20972 0.98331 0.92961 0.98274 1.20118 0.99599 0.96819 0.92672 1.20112 1.00463 0.87869 0.88090 0.89764 0.88244 0.91573 0.89508 0.89754 0.84973 0.84893 0.84638 0.90593 0.87535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.47 13.19 55.43 0.73 -23.74 16 2 C 0.13 3.63 5.46 -17.82 -0.10 3.54 16 3 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 7 C -1.02 -27.40 9.75 30.60 0.30 -27.10 16 8 H 0.10 2.50 7.81 -52.49 -0.41 2.09 16 9 S 2.72 70.26 5.03 -107.50 -0.54 69.72 16 10 O -1.00 -28.49 16.66 -57.17 -0.95 -29.44 16 11 O -1.00 -28.29 16.78 -57.17 -0.96 -29.25 16 12 N -1.01 -19.81 3.26 -115.03 -0.37 -20.19 16 13 C 0.13 2.03 6.41 -3.76 -0.02 2.00 16 14 C -0.10 -1.40 5.87 -28.04 -0.16 -1.56 16 15 C -0.04 -0.51 5.76 -104.61 -0.60 -1.11 16 16 C -0.16 -2.02 9.57 -39.36 -0.38 -2.40 16 17 C 0.09 1.15 7.30 -39.53 -0.29 0.86 16 18 F -0.15 -1.89 17.27 2.25 0.04 -1.85 16 19 C -0.16 -1.87 10.04 -39.60 -0.40 -2.27 16 20 C -0.09 -1.08 9.62 -39.47 -0.38 -1.46 16 21 C -0.09 -1.33 5.82 -104.54 -0.61 -1.94 16 22 C 0.16 2.67 6.31 -5.03 -0.03 2.63 16 23 H 0.29 7.60 8.31 -40.82 -0.34 7.27 16 24 H 0.10 1.67 7.16 -51.93 -0.37 1.30 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 28 H 0.13 1.43 8.05 -52.49 -0.42 1.01 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.14 1.36 8.05 -52.49 -0.42 0.94 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.11 1.86 6.95 -51.93 -0.36 1.50 16 LS Contribution 291.85 15.07 4.40 4.40 Total: -1.00 -33.76 291.85 -8.59 -42.35 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -3.23 Total: 1.72 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: -2.67 Total: -28.82 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.36 Total: -43.92 kcal Atomic # 8 Polarization: -56.78 SS G_CDS: -1.91 Total: -58.69 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 70.26 SS G_CDS: -0.54 Total: 69.72 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -33.76 -8.59 -42.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092557334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.997 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds