Wall clock time and date at job start Tue Mar 31 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86808 * 119.99874 * 2 1 4 4 H 1.48496 * 109.46714 * 240.00293 * 3 2 1 5 5 H 1.48497 * 109.46900 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00286 * 3 2 1 7 7 C 1.37878 * 120.00273 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99880 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99816 * 0.02562 * 7 2 1 10 10 O 1.42096 * 106.40381 * 66.46096 * 9 7 2 11 11 O 1.42092 * 106.40217 * 293.53401 * 9 7 2 12 12 N 1.65601 * 107.21504 * 179.97438 * 9 7 2 13 13 C 1.47225 * 121.33797 * 89.99863 * 12 9 7 14 14 C 1.52785 * 107.92003 * 115.80977 * 13 12 9 15 15 C 1.50604 * 110.86616 * 47.45233 * 14 13 12 16 16 C 1.38949 * 117.59905 * 160.07887 * 15 14 13 17 17 C 1.38132 * 120.56522 * 179.27695 * 16 15 14 18 18 F 1.35097 * 120.11243 * 180.02562 * 17 16 15 19 19 C 1.38485 * 119.77152 * 0.03003 * 17 16 15 20 20 C 1.37925 * 119.68864 * 0.21407 * 19 17 16 21 21 C 1.37685 * 122.86348 * 339.79716 * 15 14 13 22 22 C 1.46685 * 121.33543 * 270.02101 * 12 9 7 23 23 H 0.97000 * 120.00258 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.76825 * 356.20584 * 13 12 9 25 25 H 1.08993 * 109.81763 * 235.44151 * 13 12 9 26 26 H 1.09000 * 109.19900 * 287.09646 * 14 13 12 27 27 H 1.08999 * 109.20088 * 167.81280 * 14 13 12 28 28 H 1.07997 * 119.71824 * 359.30007 * 16 15 14 29 29 H 1.07996 * 120.15966 * 180.48541 * 19 17 16 30 30 H 1.08000 * 119.72430 * 179.97438 * 20 19 17 31 31 H 1.08998 * 109.43988 * 104.38322 * 22 12 9 32 32 H 1.08995 * 109.43617 * 344.50562 * 22 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 16 1.1236 -2.7199 0.0005 10 8 0.4520 -2.7955 -1.2494 11 8 0.4512 -2.7950 1.2500 12 7 2.2485 -3.9353 0.0005 13 6 2.7686 -4.4972 1.2580 14 6 2.3414 -5.9623 1.3304 15 6 2.6248 -6.6685 0.0307 16 6 2.6981 -8.0559 0.0546 17 6 2.9401 -8.7666 -1.1048 18 9 3.0090 -10.1154 -1.0712 19 6 3.1121 -8.0917 -2.3018 20 6 3.0445 -6.7143 -2.3253 21 6 2.8048 -5.9997 -1.1592 22 6 2.7670 -4.4948 -1.2524 23 1 -0.4850 0.8400 0.0004 24 1 2.3549 -3.9502 2.1052 25 1 3.8563 -4.4292 1.2711 26 1 1.2732 -6.0143 1.5410 27 1 2.8887 -6.4560 2.1334 28 1 2.5642 -8.5831 0.9876 29 1 3.2938 -8.6415 -3.2134 30 1 3.1789 -6.1874 -3.2584 31 1 3.7740 -4.1170 -1.4291 32 1 2.1192 -4.1986 -2.0773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092557334.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:10 Heat of formation + Delta-G solvation = -137.932487 kcal Electronic energy + Delta-G solvation = -20350.652428 eV Core-core repulsion = 16929.600253 eV Total energy + Delta-G solvation = -3421.052175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.062 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.87810 -40.82829 -37.50717 -37.27917 -36.15012 -35.16538 -33.84180 -31.71931 -30.30737 -28.24697 -25.89575 -24.73402 -23.46966 -21.47959 -20.66926 -19.06784 -18.42211 -18.08516 -17.32348 -17.21987 -16.79005 -16.59167 -16.19130 -15.88406 -15.46980 -15.22184 -15.02276 -14.36479 -14.27731 -14.00890 -13.73438 -13.37480 -13.25239 -13.11320 -12.98881 -12.85183 -12.52681 -12.45898 -12.31817 -12.17819 -11.95903 -11.60976 -11.23005 -10.99711 -9.99391 -9.77355 -9.42180 -8.74210 -7.48934 0.13940 0.24700 0.27206 1.35403 1.37327 1.50547 2.21219 2.54893 2.58351 2.79596 3.24580 3.63512 3.68728 3.79941 3.89994 4.09519 4.18549 4.25368 4.28722 4.46233 4.56466 4.58623 4.71740 4.80546 4.90246 4.99181 5.12375 5.16084 5.19606 5.28716 5.30618 5.64554 5.90130 5.90737 5.94391 6.78288 8.20812 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.038428 B = 0.004603 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.454108 B = 6080.987467 C = 6258.152626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.249 1.249 5 H -0.265 1.265 6 H -0.249 1.249 7 C -1.041 5.041 8 H 0.121 0.879 9 S 2.721 3.279 10 O -1.040 7.040 11 O -1.037 7.037 12 N -1.012 6.012 13 C 0.116 3.884 14 C -0.098 4.098 15 C -0.050 4.050 16 C -0.156 4.156 17 C 0.081 3.919 18 F -0.146 7.146 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.110 4.110 22 C 0.156 3.844 23 H 0.299 0.701 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.121 0.879 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.158 0.842 31 H 0.101 0.899 32 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.448 -12.017 -1.388 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.173 1.173 5 H -0.189 1.189 6 H -0.173 1.173 7 C -1.174 5.174 8 H 0.140 0.860 9 S 2.823 3.177 10 O -1.030 7.030 11 O -1.028 7.028 12 N -0.849 5.849 13 C -0.008 4.008 14 C -0.136 4.136 15 C -0.051 4.051 16 C -0.175 4.175 17 C 0.062 3.938 18 F -0.125 7.125 19 C -0.171 4.171 20 C -0.104 4.104 21 C -0.111 4.111 22 C 0.030 3.970 23 H 0.109 0.891 24 H 0.103 0.897 25 H 0.115 0.885 26 H 0.089 0.911 27 H 0.139 0.861 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.119 0.881 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.307 -12.137 -1.376 15.356 hybrid contribution 0.332 0.832 0.019 0.896 sum 9.639 -11.305 -1.357 14.919 Atomic orbital electron populations 1.69986 1.08825 1.32434 1.41405 1.26035 0.95354 1.05401 0.87505 0.85161 0.78773 0.74438 0.80819 1.17289 1.18933 1.17309 1.30971 1.07250 1.12499 1.66727 0.86042 0.99955 0.72597 0.73607 0.71493 1.93285 1.74466 1.88280 1.46990 1.93292 1.74276 1.88293 1.46896 1.57788 1.61756 1.53274 1.12095 1.21517 1.00625 0.93514 0.85184 1.20912 1.02626 0.95093 0.95017 1.19473 0.97616 0.92731 0.95246 1.21277 1.03929 0.93633 0.98650 1.17761 1.03791 0.76717 0.95557 1.91474 1.94090 1.29540 1.97363 1.21295 1.03338 0.94811 0.97638 1.21195 0.97502 0.93332 0.98361 1.20094 1.01435 0.95631 0.93975 1.20311 1.01115 0.89491 0.86036 0.89093 0.89695 0.88461 0.91082 0.86064 0.83119 0.82301 0.82449 0.88089 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.05 13.19 21.45 0.28 -52.76 16 2 C 0.07 3.83 5.46 84.65 0.46 4.30 16 3 Si 0.99 40.40 29.54 68.60 2.03 42.42 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -1.04 -56.25 9.75 67.73 0.66 -55.59 16 8 H 0.12 5.84 7.81 -2.91 -0.02 5.82 16 9 S 2.72 144.84 5.03 -56.49 -0.28 144.55 16 10 O -1.04 -61.48 16.66 -128.00 -2.13 -63.61 16 11 O -1.04 -61.00 16.78 -128.00 -2.15 -63.15 16 12 N -1.01 -39.63 3.26 -517.85 -1.69 -41.32 16 13 C 0.12 3.66 6.41 86.17 0.55 4.21 16 14 C -0.10 -2.60 5.87 29.75 0.17 -2.42 16 15 C -0.05 -1.35 5.76 -19.86 -0.11 -1.47 16 16 C -0.16 -3.66 9.57 22.42 0.21 -3.45 16 17 C 0.08 1.88 7.30 22.30 0.16 2.05 16 18 F -0.15 -3.44 17.27 44.97 0.78 -2.66 16 19 C -0.15 -3.18 10.04 22.25 0.22 -2.96 16 20 C -0.09 -1.94 9.62 22.34 0.21 -1.72 16 21 C -0.11 -3.07 5.82 -19.81 -0.12 -3.19 16 22 C 0.16 5.06 6.31 85.64 0.54 5.60 16 23 H 0.30 15.94 8.31 -92.71 -0.77 15.17 16 24 H 0.08 2.89 7.16 -2.39 -0.02 2.87 16 25 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.12 2.26 8.10 -2.39 -0.02 2.24 16 28 H 0.15 2.86 8.05 -2.91 -0.02 2.84 16 29 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.77 8.05 -2.91 -0.02 2.74 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.09 3.18 6.95 -2.39 -0.02 3.16 16 Total: -1.00 -74.80 291.85 0.96 -73.85 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.15 Total: 17.32 kcal Atomic # 6 Polarization: -57.62 SS G_CDS: 2.98 Total: -54.64 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -1.40 Total: -94.08 kcal Atomic # 8 Polarization: -122.48 SS G_CDS: -4.28 Total: -126.76 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.78 Total: -2.66 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: 144.84 SS G_CDS: -0.28 Total: 144.55 kcal Total: -74.80 0.96 -73.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092557334.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.083 kcal (2) G-P(sol) polarization free energy of solvation -74.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds