Wall clock time and date at job start Tue Mar 31 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00362 * 2 1 4 4 H 1.48498 * 109.46940 * 239.99824 * 3 2 1 5 5 H 1.48504 * 109.46918 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47548 * 119.99869 * 3 2 1 7 7 C 1.37880 * 119.99433 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99388 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47305 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47398 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99976 * 180.02562 * 12 11 10 14 14 O 1.21568 * 120.00319 * 359.97438 * 13 12 11 15 15 C 1.47734 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.39665 * 120.11061 * 359.97438 * 15 13 12 17 17 C 1.37834 * 119.90155 * 180.02562 * 16 15 13 18 18 C 1.38635 * 120.13436 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.88845 * 180.27880 * 18 17 16 20 20 C 1.38745 * 120.22977 * 0.02562 * 18 17 16 21 21 Cl 1.73600 * 119.95190 * 180.02562 * 20 18 17 22 22 C 1.37962 * 120.09106 * 359.97438 * 20 18 17 23 23 H 0.97008 * 119.99588 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47391 * 59.99959 * 9 7 2 25 25 H 1.08996 * 109.47216 * 299.99256 * 9 7 2 26 26 H 1.08996 * 109.47344 * 59.99914 * 10 9 7 27 27 H 1.09002 * 109.47475 * 300.00095 * 10 9 7 28 28 H 1.08996 * 109.47034 * 59.99669 * 11 10 9 29 29 H 1.08996 * 109.46623 * 300.00037 * 11 10 9 30 30 H 0.97004 * 119.99584 * 0.02562 * 12 11 10 31 31 H 1.08002 * 120.05137 * 0.04206 * 16 15 13 32 32 H 1.08001 * 119.93127 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.06256 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4319 -6.1007 0.0005 13 6 1.9826 -7.3713 -0.0004 14 8 0.7874 -7.5934 -0.0013 15 6 2.9425 -8.4943 0.0008 16 6 4.3161 -8.2418 0.0023 17 6 5.2079 -9.2928 0.0029 18 6 4.7440 -10.5992 0.0025 19 9 5.6225 -11.6256 0.0087 20 6 3.3806 -10.8563 0.0009 21 17 2.8076 -12.4951 0.0011 22 6 2.4797 -9.8115 0.0003 23 1 -0.4850 0.8402 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8905 27 1 2.8717 -3.6045 -0.8894 28 1 0.8536 -5.0446 -0.8903 29 1 0.8531 -5.0450 0.8896 30 1 3.3856 -5.9235 0.0016 31 1 4.6791 -7.2246 0.0033 32 1 6.2702 -9.0981 0.0037 33 1 1.4185 -10.0122 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177855341.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:17 Heat of formation + Delta-G solvation = -79.916941 kcal Electronic energy + Delta-G solvation = -18634.207294 eV Core-core repulsion = 15213.627155 eV Total energy + Delta-G solvation = -3420.580138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.46351 -40.40807 -38.55587 -36.92907 -35.58629 -33.47633 -31.81288 -31.52277 -30.60002 -26.90491 -24.39586 -23.60386 -22.78040 -20.90951 -20.32405 -18.57457 -17.65397 -17.15273 -16.39911 -16.26621 -15.67998 -15.47766 -15.44829 -14.50356 -14.44997 -14.09249 -14.03262 -13.85026 -13.28852 -13.24572 -12.33340 -12.02332 -11.98779 -11.84427 -11.73186 -11.42537 -10.92466 -10.80544 -10.67449 -10.16239 -9.93624 -9.56506 -9.48079 -9.25698 -9.18587 -8.90688 -8.40987 -6.05687 -4.09187 0.13477 0.52782 1.51988 2.39927 3.11599 3.29201 3.33954 3.34439 3.36040 3.50375 4.07722 4.37676 4.41381 4.44812 4.59751 4.98110 5.22434 5.30144 5.37398 5.48501 5.59976 5.67467 5.68357 6.04849 6.08024 6.31108 6.50906 6.71553 6.92005 7.49165 7.58197 7.70322 7.92364 8.14272 8.33228 8.97186 9.55241 11.05538 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.042085 B = 0.002508 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.158757 B =11159.740645 C =11799.150772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.115 3.885 12 N -0.717 5.717 13 C 0.553 3.447 14 O -0.533 6.533 15 C -0.127 4.127 16 C -0.053 4.053 17 C -0.147 4.147 18 C 0.130 3.870 19 F -0.123 7.123 20 C -0.083 4.083 21 Cl -0.043 7.043 22 C -0.025 4.025 23 H 0.262 0.738 24 H 0.019 0.981 25 H 0.020 0.980 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.800 -22.038 0.005 24.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.368 5.368 13 C 0.339 3.661 14 O -0.411 6.411 15 C -0.130 4.130 16 C -0.072 4.072 17 C -0.166 4.166 18 C 0.109 3.891 19 F -0.101 7.101 20 C -0.111 4.111 21 Cl -0.014 7.014 22 C -0.045 4.045 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.233 0.767 31 H 0.164 0.836 32 H 0.171 0.829 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.742 -22.227 0.005 24.268 hybrid contribution 1.065 0.701 -0.002 1.275 sum 10.807 -21.525 0.004 24.086 Atomic orbital electron populations 1.69954 1.06073 1.26870 1.50327 1.25029 0.94863 0.99323 0.95214 0.86636 0.79564 0.83066 0.78592 1.20237 1.21252 1.20230 1.21153 0.92944 0.90928 1.51252 0.92686 1.19023 0.93825 0.90778 0.97728 1.21907 0.99847 0.93234 1.00965 1.21742 0.91784 0.84765 1.02411 1.46135 1.11040 1.05664 1.73915 1.17994 0.87904 0.82838 0.77406 1.90810 1.15922 1.84683 1.49710 1.20096 0.93785 0.93812 1.05328 1.21359 0.91536 0.99910 0.94408 1.21091 1.01927 0.89704 1.03859 1.17649 0.85255 0.85150 1.01005 1.91565 1.67764 1.57489 1.93275 1.20880 0.92056 0.88192 1.09981 1.98405 1.88812 1.17254 1.96930 1.21099 1.00882 0.89361 0.93121 0.92817 0.96225 0.96212 0.92618 0.92625 0.91346 0.91357 0.76702 0.83573 0.82925 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.12 1.88 5.67 -4.04 -0.02 1.85 16 12 N -0.72 -9.21 5.51 -61.29 -0.34 -9.55 16 13 C 0.55 7.56 7.77 -12.38 -0.10 7.46 16 14 O -0.53 -9.35 16.34 5.31 0.09 -9.26 16 15 C -0.13 -1.32 5.87 -104.97 -0.62 -1.93 16 16 C -0.05 -0.40 9.54 -39.20 -0.37 -0.78 16 17 C -0.15 -1.03 10.01 -39.58 -0.40 -1.43 16 18 C 0.13 1.15 7.28 -39.25 -0.29 0.86 16 19 F -0.12 -1.15 16.83 2.25 0.04 -1.11 16 20 C -0.08 -0.80 6.32 -39.50 -0.25 -1.05 16 21 Cl -0.04 -0.40 28.60 -51.86 -1.48 -1.89 16 22 C -0.03 -0.26 9.37 -39.17 -0.37 -0.63 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.40 3.83 6.50 -40.82 -0.27 3.57 16 31 H 0.15 0.74 6.40 -52.49 -0.34 0.41 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.16 1.66 7.65 -52.49 -0.40 1.25 16 LS Contribution 311.57 15.07 4.70 4.70 Total: -1.00 -31.44 311.57 -7.89 -39.32 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -3.50 Total: -2.02 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.10 Total: -10.60 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.40 Total: -35.18 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.44 -7.89 -39.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177855341.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.595 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds