Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99884 * 2 1 4 4 H 1.48499 * 109.47114 * 270.00049 * 3 2 1 5 5 H 1.48502 * 109.46994 * 29.99634 * 3 2 1 6 6 H 1.48500 * 109.47211 * 149.99672 * 3 2 1 7 7 C 1.37875 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00047 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99831 * 180.02562 * 7 2 1 10 10 O 1.42906 * 113.38235 * 313.07563 * 9 7 2 11 11 C 1.53517 * 114.17065 * 180.02562 * 9 7 2 12 12 N 1.47479 * 87.99753 * 220.35504 * 11 9 7 13 13 C 1.46897 * 110.99965 * 138.66774 * 12 11 9 14 14 C 1.50703 * 109.46984 * 169.99962 * 13 12 11 15 15 C 1.38261 * 119.96695 * 90.00601 * 14 13 12 16 16 C 1.38193 * 120.04994 * 179.97438 * 15 14 13 17 17 C 1.38448 * 119.98654 * 0.02562 * 16 15 14 18 18 F 1.35106 * 120.03337 * 179.97438 * 17 16 15 19 19 C 1.38544 * 119.93748 * 359.97438 * 17 16 15 20 20 Cl 1.73608 * 120.02451 * 179.97438 * 19 17 16 21 21 C 1.38217 * 119.97038 * 269.72291 * 14 13 12 22 22 C 1.47487 * 87.83637 * 26.97912 * 12 11 9 23 23 H 0.96994 * 120.00020 * 0.02562 * 1 2 3 24 24 H 0.96696 * 113.99578 * 46.92800 * 10 9 7 25 25 H 1.09002 * 113.47888 * 105.55862 * 11 9 7 26 26 H 1.09003 * 113.47419 * 335.15196 * 11 9 7 27 27 H 1.08993 * 109.47675 * 290.00415 * 13 12 11 28 28 H 1.09000 * 109.47111 * 50.00574 * 13 12 11 29 29 H 1.08001 * 119.97791 * 359.95105 * 15 14 13 30 30 H 1.07998 * 120.00985 * 179.97438 * 16 15 14 31 31 H 1.08000 * 119.99354 * 0.02562 * 21 14 13 32 32 H 1.09004 * 113.47787 * 87.75324 * 22 12 11 33 33 H 1.09001 * 113.47615 * 218.16496 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 8 4.0790 -0.2983 -0.9570 11 6 4.1402 -2.5945 0.0010 12 7 5.1434 -2.0878 0.9559 13 6 5.4126 -3.0749 2.0100 14 6 6.6060 -2.6341 2.8180 15 6 6.4285 -1.8353 3.9324 16 6 7.5215 -1.4306 4.6749 17 6 8.7953 -1.8248 4.3024 18 9 9.8646 -1.4292 5.0273 19 6 8.9726 -2.6252 3.1856 20 17 10.5689 -3.1203 2.7161 21 6 7.8763 -3.0337 2.4477 22 6 4.1410 -1.1011 1.3995 23 1 -0.4850 0.8400 -0.0004 24 1 3.6813 0.5831 -0.9552 25 1 4.5631 -2.8807 -0.9620 26 1 3.4901 -3.3622 0.4208 27 1 4.5429 -3.1570 2.6617 28 1 5.6193 -4.0440 1.5559 29 1 5.4350 -1.5270 4.2227 30 1 7.3822 -0.8062 5.5450 31 1 8.0132 -3.6611 1.5794 32 1 3.4904 -1.4696 2.1927 33 1 4.5646 -0.1219 1.6227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190037871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -21.502003 kcal Electronic energy + Delta-G solvation = -19843.857565 eV Core-core repulsion = 16425.810488 eV Total energy + Delta-G solvation = -3418.047077 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.06448 -39.98626 -38.89585 -36.70578 -35.07207 -32.50344 -31.99452 -31.06698 -28.29439 -25.89276 -25.31575 -23.29379 -22.94283 -21.11148 -19.20196 -17.92052 -17.40680 -16.80539 -16.23513 -16.11847 -15.88529 -15.34933 -14.55684 -14.53186 -14.04103 -13.68941 -13.48079 -13.27208 -13.04981 -12.88345 -12.62001 -12.19607 -11.83420 -11.59093 -11.56978 -11.29331 -11.05060 -10.87997 -10.55982 -10.45620 -10.02715 -9.40637 -9.12207 -9.00732 -8.73101 -8.53558 -8.23857 -6.39418 -4.44108 0.84028 0.96366 1.85756 3.02862 3.10153 3.17973 3.29460 3.94858 4.07133 4.47034 4.51013 4.66082 4.85909 4.97172 5.03516 5.16355 5.34252 5.53139 5.55452 5.72212 5.77433 5.81323 5.84916 5.97454 6.07201 6.33101 6.39382 6.55318 6.56443 6.77841 6.82268 7.24860 7.62257 8.06504 8.62187 8.63052 9.19801 10.73024 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.028614 B = 0.004004 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.316501 B = 6991.367142 C = 7261.328044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.079 3.921 3 Si 0.860 3.140 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.536 4.536 8 H 0.087 0.913 9 C 0.203 3.797 10 O -0.548 6.548 11 C 0.018 3.982 12 N -0.466 5.466 13 C 0.051 3.949 14 C -0.056 4.056 15 C -0.078 4.078 16 C -0.141 4.141 17 C 0.098 3.902 18 F -0.132 7.132 19 C -0.073 4.073 20 Cl -0.057 7.057 21 C -0.067 4.067 22 C -0.035 4.035 23 H 0.270 0.730 24 H 0.348 0.652 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.140 -4.794 8.483 17.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.126 4.126 3 Si 0.689 3.311 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.573 4.573 8 H 0.105 0.895 9 C 0.162 3.838 10 O -0.359 6.359 11 C -0.110 4.110 12 N -0.188 5.188 13 C -0.078 4.078 14 C -0.057 4.057 15 C -0.097 4.097 16 C -0.160 4.160 17 C 0.078 3.922 18 F -0.110 7.110 19 C -0.100 4.100 20 Cl -0.028 7.028 21 C -0.086 4.086 22 C -0.164 4.164 23 H 0.080 0.920 24 H 0.200 0.800 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.092 0.908 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 15.184 -5.044 8.128 17.947 hybrid contribution -0.362 1.150 0.651 1.370 sum 14.823 -3.894 8.779 17.662 Atomic orbital electron populations 1.69865 1.06111 1.27551 1.48160 1.25006 0.94896 0.99088 0.93627 0.87302 0.80469 0.84165 0.79198 1.19363 1.21264 1.17943 1.21303 0.88178 0.95414 1.52429 0.89483 1.20073 0.91850 0.87359 0.84483 1.86469 1.64208 1.24653 1.60531 1.23947 0.92344 0.97805 0.96927 1.68996 1.31477 1.09001 1.09329 1.21705 0.94513 0.97107 0.94436 1.19846 0.94479 0.96621 0.94775 1.21097 0.99085 0.95603 0.93885 1.21089 0.90173 1.02538 1.02206 1.17385 0.84240 0.99027 0.91533 1.91518 1.54244 1.89077 1.76189 1.20949 0.87980 1.03246 0.97848 1.98375 1.22634 1.90204 1.91625 1.20858 0.89861 0.99282 0.98611 1.25093 0.92810 0.96847 1.01658 0.92010 0.79985 0.90277 0.90686 0.92188 0.90060 0.84391 0.83922 0.83956 0.90791 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.01 13.96 55.43 0.77 -24.23 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 19.53 24.41 -169.99 -4.15 15.38 16 4 H -0.27 -5.92 7.06 56.52 0.40 -5.52 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.25 -5.53 5.48 56.52 0.31 -5.22 16 7 C -0.54 -14.04 9.27 -34.44 -0.32 -14.36 16 8 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 9 C 0.20 4.66 1.10 -91.18 -0.10 4.56 16 10 O -0.55 -13.23 13.32 -35.23 -0.47 -13.69 16 11 C 0.02 0.35 7.09 -7.54 -0.05 0.30 16 12 N -0.47 -8.38 6.32 -245.85 -1.55 -9.93 16 13 C 0.05 0.71 4.94 -4.98 -0.02 0.68 16 14 C -0.06 -0.73 5.46 -104.62 -0.57 -1.31 16 15 C -0.08 -0.94 9.70 -39.59 -0.38 -1.32 16 16 C -0.14 -1.60 10.03 -39.52 -0.40 -2.00 16 17 C 0.10 1.24 7.28 -39.39 -0.29 0.96 16 18 F -0.13 -1.70 16.84 2.25 0.04 -1.66 16 19 C -0.07 -0.92 6.33 -39.44 -0.25 -1.17 16 20 Cl -0.06 -0.68 28.62 -51.86 -1.48 -2.17 16 21 C -0.07 -0.84 9.48 -39.56 -0.38 -1.22 16 22 C -0.03 -0.69 6.55 -7.47 -0.05 -0.74 16 23 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.35 8.11 3.17 45.56 0.14 8.26 16 25 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 26 H 0.08 1.35 7.87 -51.93 -0.41 0.94 16 27 H 0.06 0.80 7.24 -51.93 -0.38 0.43 16 28 H 0.08 1.01 8.02 -51.93 -0.42 0.59 16 29 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.07 1.41 7.37 -51.93 -0.38 1.02 16 33 H 0.07 1.43 7.13 -51.93 -0.37 1.06 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -28.50 295.29 -8.46 -36.96 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.15 Total: 8.52 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.91 Total: -13.62 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: -0.78 Total: -34.17 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.47 Total: -13.69 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.15 Total: 15.38 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.50 -8.46 -36.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190037871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.458 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds