Wall clock time and date at job start Tue Mar 31 2020 06:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99822 * 2 1 4 4 H 1.48501 * 109.47051 * 269.99935 * 3 2 1 5 5 H 1.48505 * 109.47525 * 29.99735 * 3 2 1 6 6 H 1.48502 * 109.47075 * 149.99921 * 3 2 1 7 7 C 1.37873 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00387 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47149 * 179.97438 * 9 7 2 11 11 C 1.46896 * 110.99674 * 190.00030 * 10 9 7 12 12 C 1.50698 * 109.47474 * 74.72565 * 11 10 9 13 13 C 1.33402 * 125.19989 * 85.41226 * 12 11 10 14 14 C 1.38482 * 114.91388 * 180.02562 * 13 12 11 15 15 Cl 1.73597 * 122.54812 * 179.97438 * 14 13 12 16 16 C 1.33437 * 114.90013 * 0.02562 * 14 13 12 17 17 S 1.75883 * 125.19484 * 265.11702 * 12 11 10 18 18 C 1.46892 * 110.99997 * 66.04776 * 10 9 7 19 19 C 1.52999 * 109.47249 * 196.05773 * 18 10 9 20 20 C 1.53005 * 117.49961 * 243.72449 * 19 18 10 21 21 C 1.53005 * 117.49693 * 175.06468 * 19 18 10 22 22 H 0.97002 * 119.99663 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47090 * 300.00231 * 9 7 2 24 24 H 1.09007 * 109.46823 * 59.99923 * 9 7 2 25 25 H 1.09005 * 109.47198 * 194.71887 * 11 10 9 26 26 H 1.08999 * 109.47622 * 314.72413 * 11 10 9 27 27 H 1.08001 * 122.54346 * 0.02562 * 13 12 11 28 28 H 1.08000 * 125.19673 * 179.97438 * 16 14 13 29 29 H 1.09003 * 109.47583 * 316.06006 * 18 10 9 30 30 H 1.09004 * 109.47125 * 76.05544 * 18 10 9 31 31 H 1.08995 * 115.55225 * 29.39784 * 19 18 10 32 32 H 1.08999 * 117.49547 * 0.02562 * 20 19 18 33 33 H 1.08997 * 117.49803 * 145.02023 * 20 19 18 34 34 H 1.09000 * 117.49381 * 214.97683 * 21 19 18 35 35 H 1.08993 * 117.50010 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5212 -4.8934 -0.2376 12 6 1.1406 -4.9960 -1.6921 13 6 1.9365 -5.4411 -2.6657 14 6 1.3679 -5.4443 -3.9284 15 17 2.2263 -5.9826 -5.3380 16 6 0.1103 -5.0010 -3.9794 17 16 -0.4235 -4.5540 -2.3642 18 6 2.9710 -3.6540 1.2538 19 6 4.2015 -4.5450 1.0730 20 6 4.2855 -5.8146 1.9228 21 6 5.1942 -4.6228 2.2347 22 1 -0.4850 0.8401 0.0004 23 1 0.6241 -2.5567 0.8903 24 1 0.6247 -2.5571 -0.8897 25 1 2.1871 -5.7163 0.0225 26 1 0.6229 -4.9446 0.3775 27 1 2.9476 -5.7738 -2.4831 28 1 -0.4897 -4.9321 -4.8748 29 1 3.2885 -2.6449 1.5167 30 1 2.3446 -4.0567 2.0498 31 1 4.6058 -4.5887 0.0617 32 1 3.4639 -6.0152 2.6104 33 1 4.7454 -6.6933 1.4707 34 1 6.2516 -4.7181 1.9875 35 1 4.9709 -4.0389 3.1275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194379934.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:19 Heat of formation + Delta-G solvation = 52.073436 kcal Electronic energy + Delta-G solvation = -17896.609184 eV Core-core repulsion = 15047.965754 eV Total energy + Delta-G solvation = -2848.643430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.065 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.34640 -37.55327 -36.06206 -35.23966 -32.56939 -30.27589 -27.47352 -26.53601 -24.24749 -22.73695 -22.11327 -20.93478 -19.85420 -18.84869 -17.17560 -16.45155 -15.60775 -15.45418 -14.86977 -14.20530 -13.98702 -13.85460 -13.29241 -13.12180 -12.77414 -12.55374 -11.95682 -11.81961 -11.80109 -11.30861 -11.23120 -11.11950 -10.93007 -10.83659 -10.68764 -10.52562 -10.40372 -10.14586 -9.70761 -9.55405 -9.23512 -8.47800 -8.39252 -8.02091 -7.35880 -6.04330 -4.05159 1.17275 1.60638 2.07892 2.79839 2.85796 3.31621 3.37806 3.41000 4.08226 4.41633 4.76373 5.04443 5.15830 5.22046 5.31951 5.35951 5.44305 5.63774 5.64624 5.79075 5.85074 5.96161 6.08576 6.18565 6.23891 6.29694 6.37915 6.46962 6.54997 6.76264 7.23034 7.26331 7.76521 8.03433 8.13525 8.48153 9.01731 9.58754 11.06439 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.010983 B = 0.006239 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.836887 B = 4487.093485 C = 5998.932480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.187 3.813 10 N -0.528 5.528 11 C 0.120 3.880 12 C -0.131 4.131 13 C -0.133 4.133 14 C -0.038 4.038 15 Cl -0.068 7.068 16 C -0.230 4.230 17 S 0.160 5.840 18 C 0.092 3.908 19 C -0.135 4.135 20 C -0.192 4.192 21 C -0.182 4.182 22 H 0.261 0.739 23 H -0.010 1.010 24 H 0.039 0.961 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.094 0.906 30 H 0.023 0.977 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -12.762 -2.636 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.082 0.918 9 C 0.062 3.938 10 N -0.252 5.252 11 C -0.010 4.010 12 C -0.250 4.250 13 C -0.163 4.163 14 C -0.078 4.078 15 Cl -0.040 7.040 16 C -0.367 4.367 17 S 0.424 5.576 18 C -0.036 4.036 19 C -0.154 4.154 20 C -0.229 4.229 21 C -0.220 4.220 22 H 0.071 0.929 23 H 0.008 0.992 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.056 0.944 27 H 0.163 0.837 28 H 0.185 0.815 29 H 0.112 0.888 30 H 0.041 0.959 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.649 -12.026 -2.534 12.401 hybrid contribution 1.198 0.328 -0.231 1.264 sum 2.847 -11.698 -2.766 12.353 Atomic orbital electron populations 1.69957 1.05998 1.26758 1.50883 1.24960 0.94846 0.99213 0.95417 0.86536 0.79744 0.83206 0.78172 1.20639 1.21338 1.19834 1.21122 0.93506 0.89783 1.50131 0.91785 1.19879 0.90188 0.87318 0.96414 1.62073 1.27667 1.01805 1.33655 1.20547 0.97536 0.95054 0.87881 1.24410 0.96594 1.03691 1.00302 1.19651 1.01472 1.05461 0.89703 1.19707 0.93081 1.06139 0.88919 1.98329 1.77155 1.88830 1.39669 1.25509 0.99171 1.09243 1.02817 1.84639 1.13713 1.62310 0.96981 1.21595 0.91830 1.00061 0.90072 1.22475 0.98641 0.98044 0.96211 1.23052 1.02863 0.92578 1.04428 1.22902 0.96380 1.02111 1.00597 0.92931 0.99214 0.94277 0.89613 0.94445 0.83736 0.81506 0.88795 0.95919 0.87292 0.89325 0.89449 0.89272 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.51 -13.87 8.28 -34.44 -0.29 -14.16 16 8 H 0.06 1.75 7.26 -52.48 -0.38 1.37 16 9 C 0.19 4.67 4.55 -4.98 -0.02 4.64 16 10 N -0.53 -10.74 4.38 -237.52 -1.04 -11.78 16 11 C 0.12 2.06 5.32 -4.98 -0.03 2.03 16 12 C -0.13 -2.22 5.44 -36.00 -0.20 -2.42 16 13 C -0.13 -2.10 9.94 -41.18 -0.41 -2.51 16 14 C -0.04 -0.58 6.27 -41.17 -0.26 -0.84 16 15 Cl -0.07 -0.92 29.11 -51.86 -1.51 -2.43 16 16 C -0.23 -3.39 11.08 29.05 0.32 -3.07 16 17 S 0.16 2.60 22.20 -107.50 -2.39 0.22 16 18 C 0.09 1.69 5.08 -3.83 -0.02 1.67 16 19 C -0.14 -2.02 4.98 -90.62 -0.45 -2.47 16 20 C -0.19 -2.39 10.02 -26.69 -0.27 -2.65 16 21 C -0.18 -2.34 10.26 -26.69 -0.27 -2.62 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 23 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 24 H 0.04 1.03 6.36 -51.92 -0.33 0.70 16 25 H 0.09 1.29 7.01 -51.93 -0.36 0.92 16 26 H 0.04 0.65 8.01 -51.93 -0.42 0.23 16 27 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 28 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.09 1.94 6.59 -51.93 -0.34 1.59 16 30 H 0.02 0.40 7.78 -51.93 -0.40 0.00 16 31 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 32 H 0.09 1.08 8.03 -51.93 -0.42 0.66 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 322.66 15.07 4.86 4.86 Total: -1.00 -28.45 322.66 -11.09 -39.54 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.75 Total: -0.59 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -1.98 Total: -20.90 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.30 Total: -37.16 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.39 Total: 0.22 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.51 Total: -2.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.45 -11.09 -39.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194379934.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.612 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds