Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38458 * 120.02059 * 90.00204 * 15 14 13 17 17 F 1.35097 * 120.01839 * 359.97438 * 16 15 14 18 18 C 1.38445 * 119.96250 * 179.97438 * 16 15 14 19 19 C 1.38234 * 120.00042 * 359.97438 * 18 16 15 20 20 C 1.38203 * 120.03739 * 359.97438 * 19 18 16 21 21 C 1.38299 * 120.01795 * 269.71527 * 15 14 13 22 22 Cl 1.73603 * 119.99952 * 0.02562 * 21 15 14 23 23 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.07998 * 120.00180 * 179.97438 * 18 16 15 32 32 H 1.08000 * 119.97977 * 180.02562 * 19 18 16 33 33 H 1.08000 * 119.98164 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1699 -5.2241 0.0092 16 6 8.4069 -5.8780 -1.1880 17 9 8.1874 -5.2429 -2.3600 18 6 8.8689 -7.1831 -1.1834 19 6 9.0938 -7.8324 0.0161 20 6 8.8583 -7.1794 1.2111 21 6 8.4002 -5.8736 1.2083 22 17 8.1099 -5.0524 2.7100 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 3.6587 -3.1492 -0.8920 27 1 3.6580 -3.1512 0.8879 28 1 5.7176 -4.6435 -0.0031 29 1 8.0353 -3.2901 -0.8828 30 1 8.0265 -3.2889 0.8971 31 1 9.0535 -7.6939 -2.1168 32 1 9.4546 -8.8504 0.0193 33 1 9.0340 -7.6877 2.1476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292788151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -75.239246 kcal Electronic energy + Delta-G solvation = -19274.586144 eV Core-core repulsion = 15854.208845 eV Total energy + Delta-G solvation = -3420.377298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.32235 -39.94528 -38.98391 -36.84701 -35.00850 -33.44663 -31.86337 -31.07302 -30.89284 -27.18424 -25.33053 -23.32587 -22.23586 -21.15125 -19.73605 -18.21955 -17.29295 -17.25246 -16.46477 -16.22478 -15.74274 -15.41441 -15.14921 -15.09465 -14.09521 -14.04302 -13.68037 -13.53856 -13.36250 -13.04942 -12.55035 -12.48160 -12.00208 -11.81675 -11.78741 -11.38970 -11.19820 -10.92941 -10.13736 -10.01879 -9.78607 -9.62309 -9.19595 -9.16623 -9.04938 -8.89743 -8.48042 -6.00431 -3.99028 0.43648 0.51936 1.63277 2.83951 3.14553 3.40418 3.46718 3.58183 3.58948 3.75966 4.07495 4.28460 4.34501 4.53612 4.66733 4.89385 5.19057 5.29076 5.35154 5.42778 5.50835 5.66910 5.71419 5.71598 6.11257 6.13226 6.19094 6.54445 6.72284 7.39677 7.46838 7.75052 7.82234 8.52541 8.66363 9.02692 9.62724 11.12414 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.003560 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.655545 B = 7862.409921 C = 8256.130724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.538 6.538 13 N -0.735 5.735 14 C 0.157 3.843 15 C -0.134 4.134 16 C 0.131 3.869 17 F -0.124 7.124 18 C -0.153 4.153 19 C -0.073 4.073 20 C -0.124 4.124 21 C 0.005 3.995 22 Cl -0.042 7.042 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.019 0.981 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.399 0.601 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.354 -19.481 1.214 28.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.161 4.161 11 C 0.302 3.698 12 O -0.414 6.414 13 N -0.389 5.389 14 C 0.033 3.967 15 C -0.136 4.136 16 C 0.111 3.889 17 F -0.102 7.102 18 C -0.172 4.172 19 C -0.091 4.091 20 C -0.142 4.142 21 C -0.023 4.023 22 Cl -0.013 7.013 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.233 0.767 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 21.600 -18.450 1.306 28.438 hybrid contribution 0.115 0.537 -0.133 0.565 sum 21.716 -17.913 1.173 28.175 Atomic orbital electron populations 1.69908 1.06293 1.26952 1.51160 1.24967 0.94705 0.99228 0.94348 0.86797 0.80633 0.83383 0.78752 1.20238 1.21462 1.18510 1.21115 0.89283 0.94560 1.51247 0.90939 1.19373 0.96392 0.90189 0.97691 1.21667 0.87701 1.03312 1.03395 1.21558 0.91554 0.82543 0.74195 1.90657 1.70751 1.31350 1.48663 1.46129 1.05272 1.09540 1.77957 1.20050 0.82213 0.90279 1.04114 1.19841 1.04677 0.98076 0.91002 1.17386 0.99645 0.91113 0.80757 1.91572 1.92051 1.81766 1.44849 1.21299 1.02141 0.93281 1.00442 1.21024 0.97216 1.00210 0.90687 1.21162 1.00527 0.92720 0.99834 1.20687 1.00826 0.93491 0.87288 1.98427 1.94248 1.78489 1.30134 0.92738 0.95789 0.96250 0.89577 0.89537 0.76715 0.90218 0.89679 0.83818 0.83814 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 22.91 27.47 -169.99 -4.67 18.24 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.26 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.04 3.33 -27.89 -0.09 -0.06 16 10 C -0.12 -2.40 5.64 -27.89 -0.16 -2.56 16 11 C 0.51 9.62 7.83 -10.98 -0.09 9.54 16 12 O -0.54 -12.22 15.98 5.55 0.09 -12.13 16 13 N -0.73 -10.44 5.55 -61.47 -0.34 -10.78 16 14 C 0.16 2.04 5.23 -5.19 -0.03 2.01 16 15 C -0.13 -1.37 5.26 -104.52 -0.55 -1.92 16 16 C 0.13 1.25 7.24 -39.42 -0.29 0.96 16 17 F -0.12 -1.41 16.48 2.25 0.04 -1.37 16 18 C -0.15 -1.03 10.03 -39.51 -0.40 -1.42 16 19 C -0.07 -0.39 10.04 -39.60 -0.40 -0.79 16 20 C -0.12 -0.81 9.83 -39.54 -0.39 -1.19 16 21 C 0.00 0.04 6.31 -39.51 -0.25 -0.21 16 22 Cl -0.04 -0.43 27.29 -51.86 -1.42 -1.84 16 23 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 24 H 0.02 0.63 7.16 -51.93 -0.37 0.26 16 25 H 0.02 0.51 7.53 -51.92 -0.39 0.12 16 26 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 28 H 0.40 4.70 8.46 -40.82 -0.35 4.35 16 29 H 0.08 1.11 7.64 -51.93 -0.40 0.71 16 30 H 0.09 1.16 6.89 -51.93 -0.36 0.80 16 31 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 32 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 307.79 15.07 4.64 4.64 Total: -1.00 -34.48 307.79 -7.51 -41.99 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -3.56 Total: -1.97 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -3.06 Total: -9.22 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.43 Total: -38.33 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.42 Total: -1.84 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.48 -7.51 -41.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.252 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds