Wall clock time and date at job start Tue Mar 31 2020 06:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99551 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00338 * 3 2 1 6 6 H 1.48502 * 109.47376 * 149.99955 * 3 2 1 7 7 C 1.37871 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 180.02562 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38458 * 120.02059 * 90.00204 * 15 14 13 17 17 F 1.35097 * 120.01839 * 359.97438 * 16 15 14 18 18 C 1.38445 * 119.96250 * 179.97438 * 16 15 14 19 19 C 1.38234 * 120.00042 * 359.97438 * 18 16 15 20 20 C 1.38203 * 120.03739 * 359.97438 * 19 18 16 21 21 C 1.38299 * 120.01795 * 269.71527 * 15 14 13 22 22 Cl 1.73603 * 119.99952 * 0.02562 * 21 15 14 23 23 H 0.97000 * 120.00920 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.07998 * 120.00180 * 179.97438 * 18 16 15 32 32 H 1.08000 * 119.97977 * 180.02562 * 19 18 16 33 33 H 1.08000 * 119.98164 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7000 7 6 2.0045 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 0.0000 10 6 4.0216 -2.6363 -0.0014 11 6 5.5287 -2.6363 -0.0001 12 8 6.1350 -1.5859 0.0012 13 7 6.2026 -3.8034 -0.0016 14 6 7.6676 -3.8033 0.0057 15 6 8.1699 -5.2241 0.0092 16 6 8.4069 -5.8780 -1.1880 17 9 8.1874 -5.2429 -2.3600 18 6 8.8689 -7.1831 -1.1834 19 6 9.0938 -7.8324 0.0161 20 6 8.8583 -7.1794 1.2111 21 6 8.4002 -5.8736 1.2083 22 17 8.1099 -5.0524 2.7100 23 1 -0.4851 0.8400 0.0004 24 1 3.8745 -0.6806 0.8905 25 1 3.8752 -0.6794 -0.8895 26 1 3.6587 -3.1492 -0.8920 27 1 3.6580 -3.1512 0.8879 28 1 5.7176 -4.6435 -0.0031 29 1 8.0353 -3.2901 -0.8828 30 1 8.0265 -3.2889 0.8971 31 1 9.0535 -7.6939 -2.1168 32 1 9.4546 -8.8504 0.0193 33 1 9.0340 -7.6877 2.1476 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292788151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:07 Heat of formation + Delta-G solvation = -98.017051 kcal Electronic energy + Delta-G solvation = -19275.573863 eV Core-core repulsion = 15854.208845 eV Total energy + Delta-G solvation = -3421.365018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.07979 -40.96000 -40.10219 -37.54031 -36.21779 -35.52559 -33.45230 -32.44624 -31.48652 -28.66438 -26.78080 -23.93586 -23.39829 -22.60696 -21.30658 -19.29602 -18.84180 -17.96708 -17.77803 -17.37681 -16.72309 -16.59426 -16.33708 -16.22212 -15.80011 -14.98611 -14.90979 -14.62851 -14.51892 -14.40230 -14.07055 -13.74431 -13.41568 -12.94141 -12.82872 -12.48874 -12.43934 -12.12941 -11.98173 -11.92309 -11.77992 -11.41259 -10.96542 -10.78736 -10.19256 -10.01568 -9.79513 -8.32026 -6.34941 -0.18105 -0.06890 0.96036 1.32844 1.34524 1.49987 1.63797 2.10478 2.34654 2.51222 3.03571 3.12206 3.29913 3.61624 3.83092 3.95734 4.17402 4.32391 4.36663 4.40175 4.48264 4.55650 4.78464 4.97416 4.99239 5.05830 5.17748 5.25871 5.37732 5.43251 5.60099 5.64442 6.22700 6.48208 6.71073 7.22605 7.30413 8.83653 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.026492 B = 0.003560 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.655545 B = 7862.409921 C = 8256.130724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.005 3.995 10 C -0.115 4.115 11 C 0.518 3.482 12 O -0.583 6.583 13 N -0.713 5.713 14 C 0.160 3.840 15 C -0.149 4.149 16 C 0.111 3.889 17 F -0.141 7.141 18 C -0.145 4.145 19 C -0.055 4.055 20 C -0.117 4.117 21 C -0.005 4.005 22 Cl -0.059 7.059 23 H 0.268 0.732 24 H 0.010 0.990 25 H 0.009 0.991 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.413 0.587 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.176 -21.766 1.236 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.033 4.033 10 C -0.155 4.155 11 C 0.306 3.694 12 O -0.463 6.463 13 N -0.366 5.366 14 C 0.036 3.964 15 C -0.151 4.151 16 C 0.091 3.909 17 F -0.120 7.120 18 C -0.163 4.163 19 C -0.073 4.073 20 C -0.135 4.135 21 C -0.033 4.033 22 Cl -0.030 7.030 23 H 0.077 0.923 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.121 0.879 27 H 0.121 0.879 28 H 0.250 0.750 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.185 0.815 32 H 0.202 0.798 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 23.429 -20.794 1.327 31.354 hybrid contribution -0.422 1.065 -0.145 1.154 sum 23.007 -19.730 1.182 30.332 Atomic orbital electron populations 1.70015 1.07744 1.28118 1.52488 1.25791 0.95503 1.02822 0.94250 0.85834 0.79223 0.79532 0.79159 1.19360 1.20226 1.18666 1.21416 0.91158 0.93762 1.50357 0.93118 1.19224 0.94015 0.93628 0.96413 1.21496 0.88820 1.00083 1.05096 1.21227 0.91061 0.83051 0.74045 1.90640 1.71348 1.33110 1.51174 1.45882 1.06207 1.08791 1.75736 1.19988 0.80836 0.92562 1.02980 1.19576 1.06707 0.96668 0.92129 1.17670 1.01073 0.92313 0.79849 1.91528 1.92422 1.82331 1.45692 1.21642 1.00548 0.91903 1.02234 1.21510 0.94935 1.01536 0.89308 1.21521 0.98944 0.91486 1.01562 1.20807 1.01923 0.94454 0.86078 1.98423 1.94463 1.79076 1.31061 0.92342 0.97116 0.97304 0.87922 0.87854 0.75045 0.91613 0.90555 0.81500 0.79769 0.81650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.96 21.44 0.30 -59.44 16 2 C 0.01 0.85 5.47 84.65 0.46 1.31 16 3 Si 0.94 47.61 27.47 68.60 1.88 49.50 16 4 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -13.29 6.54 99.48 0.65 -12.64 16 7 C -0.53 -31.09 9.66 25.60 0.25 -30.84 16 8 H 0.05 3.12 7.99 -2.91 -0.02 3.10 16 9 C 0.01 0.27 3.33 29.85 0.10 0.36 16 10 C -0.12 -4.53 5.64 29.85 0.17 -4.36 16 11 C 0.52 19.38 7.83 87.66 0.69 20.07 16 12 O -0.58 -26.85 15.98 -3.04 -0.05 -26.90 16 13 N -0.71 -19.95 5.55 -466.79 -2.59 -22.54 16 14 C 0.16 4.16 5.23 85.63 0.45 4.61 16 15 C -0.15 -2.90 5.26 -19.80 -0.10 -3.00 16 16 C 0.11 1.94 7.24 22.37 0.16 2.10 16 17 F -0.14 -3.12 16.48 44.97 0.74 -2.38 16 18 C -0.14 -1.44 10.03 22.32 0.22 -1.22 16 19 C -0.05 -0.33 10.04 22.26 0.22 -0.11 16 20 C -0.12 -1.10 9.83 22.30 0.22 -0.88 16 21 C -0.01 -0.08 6.31 22.32 0.14 0.06 16 22 Cl -0.06 -1.15 27.29 -2.72 -0.07 -1.22 16 23 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 24 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 25 H 0.01 0.46 7.53 -2.38 -0.02 0.44 16 26 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 27 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 28 H 0.41 9.24 8.46 -92.71 -0.78 8.45 16 29 H 0.07 1.90 7.64 -2.38 -0.02 1.88 16 30 H 0.08 2.13 6.89 -2.39 -0.02 2.12 16 31 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 32 H 0.19 -0.31 8.06 -2.91 -0.02 -0.33 16 33 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -76.00 307.79 3.50 -72.51 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 0.31 Total: 2.38 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 2.98 Total: -11.90 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.29 Total: -81.98 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.74 Total: -2.38 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 1.88 Total: 49.50 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.07 Total: -1.22 kcal Total: -76.00 3.50 -72.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292788151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.511 kcal (2) G-P(sol) polarization free energy of solvation -76.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds