Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47179 * 146.86334 * 3 2 1 5 5 N 1.46899 * 109.47277 * 176.73137 * 4 3 2 6 6 C 1.46900 * 110.99782 * 58.40052 * 5 4 3 7 7 C 1.50699 * 109.47039 * 66.04912 * 6 5 4 8 8 H 1.07998 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00327 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99374 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47121 * 59.99920 * 11 9 7 13 13 H 1.48497 * 109.47412 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47224 * 300.00304 * 11 9 7 15 15 C 1.46902 * 110.99846 * 294.45408 * 5 4 3 16 16 C 1.50706 * 109.46936 * 288.18604 * 15 5 4 17 17 C 1.33560 * 122.74355 * 95.20306 * 16 15 5 18 18 S 1.76188 * 107.95885 * 180.02562 * 17 16 15 19 19 C 1.70976 * 90.29958 * 359.97438 * 18 17 16 20 20 Cl 1.73591 * 124.92320 * 179.97438 * 19 18 17 21 21 N 1.29138 * 110.15301 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47565 * 26.86263 * 3 2 1 23 23 H 1.09006 * 109.47158 * 266.86058 * 3 2 1 24 24 H 1.09003 * 109.46618 * 56.73293 * 4 3 2 25 25 H 1.08995 * 109.46626 * 296.73177 * 4 3 2 26 26 H 1.09004 * 109.47281 * 186.04528 * 6 5 4 27 27 H 1.09002 * 109.47497 * 306.04571 * 6 5 4 28 28 H 0.97001 * 119.99613 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.46978 * 168.19094 * 15 5 4 30 30 H 1.08997 * 109.47256 * 48.18626 * 15 5 4 31 31 H 1.08007 * 126.02012 * 0.03376 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.2088 -0.7886 5 7 4.5843 1.2533 -0.7229 6 6 5.1729 0.0190 -1.2595 7 6 4.8828 -0.0754 -2.7353 8 1 4.3174 0.7033 -3.2254 9 6 5.3393 -1.1561 -3.4599 10 7 6.0274 -2.1046 -2.8629 11 14 4.9792 -1.2735 -5.2891 12 1 5.5664 -0.1007 -5.9855 13 1 5.5743 -2.5211 -5.8317 14 1 3.5099 -1.2922 -5.5041 15 6 5.0424 1.5010 0.6507 16 6 4.7478 2.9299 1.0286 17 6 3.6455 3.2892 1.6916 18 16 3.6968 5.0348 1.9251 19 6 5.1969 5.1091 1.1081 20 17 6.1034 6.5621 0.8249 21 7 5.5573 3.9276 0.7314 22 1 2.9717 -0.9159 -0.4643 23 1 2.9712 0.0571 1.0262 24 1 2.7066 2.1225 -0.3589 25 1 2.8027 1.1228 -1.8285 26 1 6.2513 0.0321 -1.1014 27 1 4.7411 -0.8416 -0.7486 28 1 6.3489 -2.8646 -3.3727 29 1 6.1159 1.3226 0.7134 30 1 4.5220 0.8299 1.3339 31 1 2.8610 2.6265 2.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294849608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = 76.364162 kcal Electronic energy + Delta-G solvation = -17459.796297 eV Core-core repulsion = 14508.665849 eV Total energy + Delta-G solvation = -2951.130449 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.05471 -37.73327 -36.96897 -35.95737 -32.75905 -31.22038 -30.18610 -27.57183 -25.92139 -24.54182 -23.41152 -20.44867 -19.76879 -18.10805 -17.50979 -16.32132 -16.15221 -15.58872 -14.87924 -14.70709 -14.32839 -13.95344 -13.82590 -13.61990 -13.37605 -12.43101 -12.33764 -12.07872 -11.94668 -11.77262 -11.56098 -11.45038 -11.18390 -11.11674 -10.78334 -10.66104 -10.31053 -9.97038 -9.75683 -9.51938 -9.35999 -8.81331 -8.50333 -7.47980 -6.10672 -4.12157 0.49030 0.68927 1.49619 1.84695 2.68538 3.00995 3.03882 3.31034 3.35643 3.38988 4.24507 4.36483 4.45357 4.89514 5.08011 5.23794 5.26625 5.33966 5.48965 5.61406 5.80135 5.82776 6.13231 6.19226 6.51079 7.07879 7.12132 7.57525 7.67200 7.78967 7.92250 8.00838 8.36845 8.94459 9.52930 10.99652 Molecular weight = 285.04amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.004891 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.188070 B = 5723.740523 C = 6943.325173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.223 3.777 3 C -0.075 4.075 4 C 0.070 3.930 5 N -0.519 5.519 6 C 0.189 3.811 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.060 3.940 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.115 3.885 16 C 0.107 3.893 17 C -0.254 4.254 18 S 0.163 5.837 19 C 0.072 3.928 20 Cl 0.019 6.981 21 N -0.435 5.435 22 H 0.127 0.873 23 H 0.099 0.901 24 H 0.061 0.939 25 H 0.094 0.906 26 H 0.036 0.964 27 H 0.004 0.996 28 H 0.263 0.737 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.437 12.127 11.766 17.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.061 4.061 5 N -0.241 5.241 6 C 0.064 3.936 7 C -0.549 4.549 8 H 0.082 0.918 9 C -0.142 4.142 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.016 4.016 16 C -0.025 4.025 17 C -0.394 4.394 18 S 0.413 5.587 19 C -0.232 4.232 20 Cl 0.047 6.953 21 N -0.152 5.152 22 H 0.144 0.856 23 H 0.117 0.883 24 H 0.080 0.920 25 H 0.112 0.888 26 H 0.054 0.946 27 H 0.021 0.979 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.882 13.174 11.568 17.957 hybrid contribution 0.409 -1.513 -0.868 1.792 sum -3.473 11.661 10.700 16.203 Atomic orbital electron populations 1.81149 1.13174 1.09764 1.09694 1.29288 0.95271 0.92434 0.92439 1.20263 0.81476 1.05998 1.03959 1.22108 0.89055 0.93589 1.01330 1.62304 1.05143 1.40873 1.15810 1.19903 0.95306 0.83150 0.95202 1.21061 1.34853 1.05984 0.93006 0.91839 1.24931 0.95107 0.95641 0.98547 1.69925 1.36827 1.10493 1.36305 0.86599 0.78544 0.77360 0.85181 1.20132 1.21363 1.20282 1.20750 1.02444 0.86585 0.91795 1.20192 0.89710 0.96229 0.96365 1.27052 1.04762 0.97257 1.10286 1.83942 1.17327 1.04485 1.52976 1.26974 0.97575 0.93183 1.05490 1.98420 1.73616 1.28364 1.94913 1.65805 1.32986 0.97356 1.19014 0.85557 0.88324 0.92042 0.88805 0.94579 0.97858 0.92760 0.88771 0.92759 0.80027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.88 18.54 42.15 0.78 -7.10 16 2 C 0.22 3.35 15.43 -20.76 -0.32 3.03 16 3 C -0.08 -1.03 5.01 -29.51 -0.15 -1.18 16 4 C 0.07 1.10 4.94 -3.82 -0.02 1.08 16 5 N -0.52 -9.43 4.65 -237.51 -1.10 -10.53 16 6 C 0.19 4.19 4.44 -4.98 -0.02 4.17 16 7 C -0.51 -12.97 8.54 -34.44 -0.29 -13.26 16 8 H 0.06 1.62 7.10 -52.49 -0.37 1.25 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -24.72 13.29 55.43 0.74 -23.99 16 11 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.12 1.72 5.30 -4.97 -0.03 1.69 16 16 C 0.11 1.52 5.76 -84.21 -0.48 1.03 16 17 C -0.25 -2.86 9.88 29.09 0.29 -2.57 16 18 S 0.16 1.69 23.22 -107.50 -2.50 -0.81 16 19 C 0.07 0.94 8.03 51.63 0.41 1.36 16 20 Cl 0.02 0.22 29.33 -51.86 -1.52 -1.30 16 21 N -0.44 -6.83 10.54 -8.99 -0.09 -6.92 16 22 H 0.13 1.97 6.43 -51.93 -0.33 1.64 16 23 H 0.10 1.08 6.19 -51.93 -0.32 0.76 16 24 H 0.06 0.87 6.42 -51.93 -0.33 0.54 16 25 H 0.09 1.69 6.90 -51.93 -0.36 1.33 16 26 H 0.04 0.89 7.86 -51.93 -0.41 0.48 16 27 H 0.00 0.08 6.03 -51.93 -0.31 -0.23 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.09 1.50 7.81 -51.93 -0.41 1.10 16 30 H 0.05 0.66 5.91 -51.93 -0.31 0.36 16 31 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 300.24 15.07 4.52 4.52 Total: -1.00 -29.14 300.24 -7.62 -36.76 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -2.71 Total: -3.19 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -0.71 Total: -3.18 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: 0.32 Total: -48.54 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.50 Total: -0.81 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.52 Total: -1.30 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.14 -7.62 -36.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294849608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.119 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds