Wall clock time and date at job start Tue Mar 31 2020 05:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47179 * 146.86334 * 3 2 1 5 5 N 1.46899 * 109.47277 * 176.73137 * 4 3 2 6 6 C 1.46900 * 110.99782 * 58.40052 * 5 4 3 7 7 C 1.50699 * 109.47039 * 66.04912 * 6 5 4 8 8 H 1.07998 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00327 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99374 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00321 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47121 * 59.99920 * 11 9 7 13 13 H 1.48497 * 109.47412 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47224 * 300.00304 * 11 9 7 15 15 C 1.46902 * 110.99846 * 294.45408 * 5 4 3 16 16 C 1.50706 * 109.46936 * 288.18604 * 15 5 4 17 17 C 1.33560 * 122.74355 * 95.20306 * 16 15 5 18 18 S 1.76188 * 107.95885 * 180.02562 * 17 16 15 19 19 C 1.70976 * 90.29958 * 359.97438 * 18 17 16 20 20 Cl 1.73591 * 124.92320 * 179.97438 * 19 18 17 21 21 N 1.29138 * 110.15301 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47565 * 26.86263 * 3 2 1 23 23 H 1.09006 * 109.47158 * 266.86058 * 3 2 1 24 24 H 1.09003 * 109.46618 * 56.73293 * 4 3 2 25 25 H 1.08995 * 109.46626 * 296.73177 * 4 3 2 26 26 H 1.09004 * 109.47281 * 186.04528 * 6 5 4 27 27 H 1.09002 * 109.47497 * 306.04571 * 6 5 4 28 28 H 0.97001 * 119.99613 * 180.02562 * 10 9 7 29 29 H 1.08998 * 109.46978 * 168.19094 * 15 5 4 30 30 H 1.08997 * 109.47256 * 48.18626 * 15 5 4 31 31 H 1.08007 * 126.02012 * 0.03376 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1174 1.2088 -0.7886 5 7 4.5843 1.2533 -0.7229 6 6 5.1729 0.0190 -1.2595 7 6 4.8828 -0.0754 -2.7353 8 1 4.3174 0.7033 -3.2254 9 6 5.3393 -1.1561 -3.4599 10 7 6.0274 -2.1046 -2.8629 11 14 4.9792 -1.2735 -5.2891 12 1 5.5664 -0.1007 -5.9855 13 1 5.5743 -2.5211 -5.8317 14 1 3.5099 -1.2922 -5.5041 15 6 5.0424 1.5010 0.6507 16 6 4.7478 2.9299 1.0286 17 6 3.6455 3.2892 1.6916 18 16 3.6968 5.0348 1.9251 19 6 5.1969 5.1091 1.1081 20 17 6.1034 6.5621 0.8249 21 7 5.5573 3.9276 0.7314 22 1 2.9717 -0.9159 -0.4643 23 1 2.9712 0.0571 1.0262 24 1 2.7066 2.1225 -0.3589 25 1 2.8027 1.1228 -1.8285 26 1 6.2513 0.0321 -1.1014 27 1 4.7411 -0.8416 -0.7486 28 1 6.3489 -2.8646 -3.3727 29 1 6.1159 1.3226 0.7134 30 1 4.5220 0.8299 1.3339 31 1 2.8610 2.6265 2.0259 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294849608.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:18 Heat of formation + Delta-G solvation = 57.299170 kcal Electronic energy + Delta-G solvation = -17460.623017 eV Core-core repulsion = 14508.665849 eV Total energy + Delta-G solvation = -2951.957169 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.040 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.08625 -39.02363 -37.89049 -37.26266 -34.68397 -32.33856 -31.50107 -29.08644 -27.20430 -25.66637 -25.02227 -21.85591 -20.80674 -19.12935 -18.75625 -18.16796 -17.14426 -16.95916 -16.36602 -15.92985 -15.72907 -15.13197 -15.02763 -14.76907 -14.56120 -14.12359 -13.59118 -13.40927 -13.19534 -12.99013 -12.87576 -12.72198 -12.60353 -12.45019 -12.34345 -12.23746 -11.81250 -11.51518 -11.23505 -10.71480 -10.51245 -10.42853 -9.73981 -8.90140 -8.11947 -6.18042 -0.43211 -0.18994 0.58818 0.94735 1.45663 1.47020 1.53555 1.66095 1.79697 1.83227 2.46333 3.03252 3.22875 3.39664 3.60243 4.14446 4.18757 4.26351 4.35507 4.46827 4.68684 4.71073 4.92334 5.03880 5.20089 5.40263 5.43565 5.74500 6.14758 6.36651 6.60465 6.62808 6.71109 6.96937 7.50444 8.97428 Molecular weight = 285.04amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.004891 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.188070 B = 5723.740523 C = 6943.325173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.075 3.925 5 N -0.535 5.535 6 C 0.204 3.796 7 C -0.516 4.516 8 H 0.057 0.943 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.949 3.051 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.271 1.271 15 C 0.118 3.882 16 C 0.081 3.919 17 C -0.242 4.242 18 S 0.239 5.761 19 C 0.045 3.955 20 Cl 0.021 6.979 21 N -0.479 5.479 22 H 0.109 0.891 23 H 0.136 0.864 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.004 0.996 27 H 0.005 0.995 28 H 0.262 0.738 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 13.027 12.967 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.172 5.172 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.055 4.055 5 N -0.257 5.257 6 C 0.078 3.922 7 C -0.554 4.554 8 H 0.075 0.925 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.775 3.225 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.196 1.196 15 C -0.012 4.012 16 C -0.051 4.051 17 C -0.382 4.382 18 S 0.489 5.511 19 C -0.258 4.258 20 Cl 0.049 6.951 21 N -0.197 5.197 22 H 0.127 0.873 23 H 0.154 0.846 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -5.420 14.107 12.777 19.790 hybrid contribution 0.860 -1.681 -1.169 2.221 sum -4.561 12.425 11.609 17.605 Atomic orbital electron populations 1.81183 1.14192 1.10792 1.11016 1.29313 0.95123 0.91390 0.91273 1.20171 0.80543 1.04086 1.05567 1.22003 0.87656 0.95470 1.00413 1.62078 1.06463 1.38659 1.18517 1.19516 0.93623 0.85140 0.93914 1.21405 1.33850 1.05338 0.94856 0.92481 1.25608 0.95274 0.95665 1.02049 1.70020 1.38129 1.11064 1.37529 0.85748 0.78527 0.77094 0.81102 1.20231 1.21212 1.19640 1.20708 1.01658 0.88365 0.90435 1.19982 0.91088 0.95413 0.98641 1.27441 1.04013 0.98798 1.07952 1.83706 1.14175 1.02754 1.50444 1.27222 0.99245 0.92885 1.06424 1.98414 1.73917 1.27806 1.94998 1.65732 1.34783 0.98552 1.20640 0.87279 0.84615 0.89784 0.91472 0.97753 0.97741 0.92901 0.90777 0.89535 0.77024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.95 18.54 20.00 0.37 -15.57 16 2 C 0.25 6.81 15.43 89.44 1.38 8.19 16 3 C -0.06 -1.56 5.01 28.79 0.14 -1.41 16 4 C 0.07 2.24 4.94 86.31 0.43 2.66 16 5 N -0.53 -19.12 4.65 -905.34 -4.21 -23.33 16 6 C 0.20 9.17 4.44 85.56 0.38 9.55 16 7 C -0.52 -26.53 8.54 25.60 0.22 -26.31 16 8 H 0.06 2.95 7.10 -2.91 -0.02 2.93 16 9 C 0.01 0.68 5.46 84.66 0.46 1.14 16 10 N -0.93 -51.84 13.29 21.45 0.28 -51.56 16 11 Si 0.95 42.79 29.54 68.60 2.03 44.81 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 C 0.12 3.39 5.30 85.56 0.45 3.85 16 16 C 0.08 2.13 5.76 41.49 0.24 2.37 16 17 C -0.24 -4.56 9.88 66.76 0.66 -3.90 16 18 S 0.24 4.15 23.22 -56.49 -1.31 2.83 16 19 C 0.04 1.11 8.03 130.64 1.05 2.16 16 20 Cl 0.02 0.47 29.33 -2.72 -0.08 0.39 16 21 N -0.48 -14.63 10.54 -182.36 -1.92 -16.55 16 22 H 0.11 3.26 6.43 -2.39 -0.02 3.25 16 23 H 0.14 2.41 6.19 -2.38 -0.01 2.40 16 24 H 0.08 2.14 6.42 -2.39 -0.02 2.13 16 25 H 0.07 2.38 6.90 -2.39 -0.02 2.36 16 26 H 0.00 0.22 7.86 -2.39 -0.02 0.20 16 27 H 0.00 0.22 6.03 -2.39 -0.01 0.21 16 28 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 29 H 0.07 2.40 7.81 -2.39 -0.02 2.38 16 30 H 0.09 1.85 5.91 -2.39 -0.01 1.84 16 31 H 0.21 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -63.84 300.24 1.75 -62.09 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: 1.18 Total: -1.38 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.41 Total: -1.72 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -5.48 Total: -107.02 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.31 Total: 2.83 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -63.84 1.75 -62.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294849608.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.384 kcal (2) G-P(sol) polarization free energy of solvation -63.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds