Wall clock time and date at job start Tue Mar 31 2020 05:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47000 * 118.05082 * 3 2 1 5 5 N 1.46905 * 109.46763 * 179.39907 * 4 3 2 6 6 C 1.46896 * 111.00332 * 287.95857 * 5 4 3 7 7 C 1.50694 * 109.47100 * 160.36122 * 6 5 4 8 8 H 1.07998 * 120.00311 * 4.66136 * 7 6 5 9 9 C 1.37883 * 119.99869 * 184.66478 * 7 6 5 10 10 N 1.31512 * 119.99746 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00047 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46796 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46903 * 119.99796 * 11 9 7 14 14 H 1.48500 * 109.47041 * 240.00180 * 11 9 7 15 15 C 1.46907 * 110.99717 * 164.00157 * 5 4 3 16 16 C 1.50701 * 109.47006 * 293.95920 * 15 5 4 17 17 N 1.28982 * 124.90637 * 90.00348 * 16 15 5 18 18 C 1.31822 * 117.13904 * 179.97438 * 17 16 15 19 19 C 1.33758 * 114.45800 * 359.97438 * 18 17 16 20 20 Cl 1.73605 * 126.04291 * 179.97438 * 19 18 17 21 21 S 1.70975 * 124.89539 * 269.95463 * 16 15 5 22 22 H 1.09001 * 109.46926 * 358.05247 * 3 2 1 23 23 H 1.09001 * 109.47023 * 238.04992 * 3 2 1 24 24 H 1.09004 * 109.47041 * 59.40445 * 4 3 2 25 25 H 1.08999 * 109.47094 * 299.40085 * 4 3 2 26 26 H 1.09008 * 109.47038 * 280.36264 * 6 5 4 27 27 H 1.08995 * 109.47081 * 40.35418 * 6 5 4 28 28 H 0.97000 * 119.99543 * 180.02562 * 10 9 7 29 29 H 1.08989 * 109.46881 * 173.95549 * 15 5 4 30 30 H 1.09002 * 109.46726 * 53.95339 * 15 5 4 31 31 H 1.08000 * 122.77328 * 179.72778 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.6793 -1.2731 5 7 4.5866 0.6927 -1.2662 6 6 5.0997 1.6534 -0.2805 7 6 6.5306 1.3167 0.0514 8 1 7.0346 0.5209 -0.4770 9 6 7.1963 2.0245 1.0296 10 7 6.5827 2.9938 1.6726 11 14 8.9698 1.6067 1.4415 12 1 9.4264 0.4848 0.5823 13 1 9.8270 2.7953 1.2014 14 1 9.0656 1.2073 2.8686 15 6 5.1167 0.9793 -2.6061 16 6 4.7727 -0.1559 -3.5357 17 7 3.6986 -0.2286 -4.2460 18 6 3.5533 -1.2936 -5.0091 19 6 4.5631 -2.1679 -4.9379 20 17 4.6819 -3.6644 -5.8098 21 16 5.7508 -1.5328 -3.8018 22 1 2.9717 -1.0263 0.0349 23 1 2.9710 0.5446 0.8720 24 1 2.7451 1.7029 -1.3133 25 1 2.7634 0.1291 -2.1448 26 1 5.0501 2.6605 -0.6947 27 1 4.4951 1.6028 0.6249 28 1 7.0512 3.4920 2.3605 29 1 6.1996 1.0895 -2.5523 30 1 4.6755 1.9026 -2.9814 31 1 2.6883 -1.4494 -5.6368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360129693.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:27 Heat of formation + Delta-G solvation = 54.956144 kcal Electronic energy + Delta-G solvation = -17292.925712 eV Core-core repulsion = 14340.866942 eV Total energy + Delta-G solvation = -2952.058770 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 285.040 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.87088 -38.85922 -37.80746 -37.40781 -34.66286 -32.95434 -31.40588 -29.08531 -27.58686 -24.97533 -24.74820 -21.95932 -21.00091 -19.28365 -18.56011 -18.36145 -17.06814 -16.86034 -16.21391 -15.94130 -15.82889 -15.33828 -15.00172 -14.86477 -14.26688 -14.02122 -13.75814 -13.45580 -13.30050 -13.13208 -13.00387 -12.91415 -12.60773 -12.43650 -12.34330 -12.01694 -11.80124 -11.57216 -11.20353 -10.69669 -10.47291 -10.22122 -9.83374 -9.10987 -8.08210 -6.15358 -0.47648 -0.10323 0.65364 1.17535 1.50447 1.54459 1.63428 1.65374 1.74922 1.78941 2.50488 2.88143 3.11132 3.27787 3.66079 3.97301 4.13048 4.21084 4.25946 4.50144 4.64089 4.73118 4.92472 5.04003 5.07639 5.29020 5.34683 5.77998 6.13587 6.25782 6.52293 6.57549 6.64497 6.99673 7.53927 9.02048 Molecular weight = 285.04amu Principal moments of inertia in cm(-1) A = 0.012847 B = 0.005441 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.923640 B = 5144.643611 C = 6834.123839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.243 3.757 3 C -0.016 4.016 4 C 0.059 3.941 5 N -0.524 5.524 6 C 0.202 3.798 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.009 3.991 10 N -0.932 5.932 11 Si 0.954 3.046 12 H -0.259 1.259 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.135 3.865 16 C 0.060 3.940 17 N -0.485 5.485 18 C 0.052 3.948 19 C -0.211 4.211 20 Cl 0.009 6.991 21 S 0.223 5.777 22 H 0.133 0.867 23 H 0.115 0.885 24 H 0.031 0.969 25 H 0.084 0.916 26 H -0.027 1.027 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -10.509 -12.368 16.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.074 4.074 3 C -0.057 4.057 4 C -0.071 4.071 5 N -0.249 5.249 6 C 0.076 3.924 7 C -0.550 4.550 8 H 0.087 0.913 9 C -0.189 4.189 10 N -0.573 5.573 11 Si 0.780 3.220 12 H -0.183 1.183 13 H -0.214 1.214 14 H -0.212 1.212 15 C 0.004 3.996 16 C -0.216 4.216 17 N -0.201 5.201 18 C -0.102 4.102 19 C -0.360 4.360 20 Cl 0.037 6.963 21 S 0.477 5.523 22 H 0.151 0.849 23 H 0.132 0.868 24 H 0.049 0.951 25 H 0.103 0.897 26 H -0.010 1.010 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -1.663 -10.880 -11.744 16.096 hybrid contribution 0.141 0.771 -0.361 0.863 sum -1.521 -10.109 -12.105 15.845 Atomic orbital electron populations 1.81173 1.14264 1.11096 1.10558 1.29465 0.95341 0.91219 0.91394 1.19330 0.79259 1.06150 1.00913 1.21975 0.88719 0.99137 0.97262 1.62003 1.05916 1.52539 1.04489 1.19592 0.95279 0.87612 0.89908 1.21473 0.97384 1.17013 1.19082 0.91276 1.25695 1.01938 0.95039 0.96242 1.70059 1.38581 1.23081 1.25595 0.85557 0.80338 0.78135 0.77943 1.18322 1.21371 1.21214 1.20558 1.01803 0.91038 0.86195 1.27016 0.93779 1.00837 1.00000 1.66529 1.20880 1.24030 1.08669 1.22141 1.00090 0.88280 0.99645 1.27107 1.02964 0.97951 1.07966 1.98364 1.97627 1.27112 1.73177 1.84257 1.20295 1.13695 1.34066 0.84872 0.86756 0.95094 0.89719 1.00952 0.94958 0.93007 0.87866 0.92353 0.78419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.70 18.54 20.01 0.37 -16.33 16 2 C 0.24 7.11 15.43 89.44 1.38 8.49 16 3 C -0.02 -0.43 5.78 28.79 0.17 -0.27 16 4 C 0.06 1.77 4.78 86.30 0.41 2.19 16 5 N -0.52 -18.07 4.37 -905.35 -3.96 -22.03 16 6 C 0.20 8.80 4.59 85.56 0.39 9.19 16 7 C -0.51 -24.55 8.61 25.60 0.22 -24.33 16 8 H 0.07 3.21 7.66 -2.91 -0.02 3.19 16 9 C 0.01 0.46 5.46 84.66 0.46 0.93 16 10 N -0.93 -50.89 13.29 21.45 0.28 -50.60 16 11 Si 0.95 40.16 29.54 68.60 2.03 42.19 16 12 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 13 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.29 -12.06 7.11 99.48 0.71 -11.36 16 15 C 0.13 4.26 5.37 85.56 0.46 4.72 16 16 C 0.06 1.67 6.09 88.53 0.54 2.20 16 17 N -0.48 -13.23 9.36 -191.36 -1.79 -15.03 16 18 C 0.05 1.19 11.32 83.68 0.95 2.13 16 19 C -0.21 -4.60 7.21 66.80 0.48 -4.12 16 20 Cl 0.01 0.17 29.31 -2.72 -0.08 0.09 16 21 S 0.22 5.31 23.18 -56.49 -1.31 4.00 16 22 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 23 H 0.11 3.22 6.52 -2.39 -0.02 3.20 16 24 H 0.03 0.98 8.05 -2.38 -0.02 0.96 16 25 H 0.08 2.49 6.03 -2.39 -0.01 2.48 16 26 H -0.03 -1.32 8.00 -2.38 -0.02 -1.34 16 27 H 0.03 1.49 6.24 -2.39 -0.01 1.47 16 28 H 0.26 13.66 8.31 -92.71 -0.77 12.89 16 29 H 0.10 3.37 7.32 -2.39 -0.02 3.35 16 30 H 0.06 1.86 8.12 -2.39 -0.02 1.85 16 31 H 0.20 3.47 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -56.61 306.01 2.17 -54.44 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.17 Total: 2.14 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.46 Total: 1.13 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -5.09 Total: -103.99 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Atomic # 16 Polarization: 5.31 SS G_CDS: -1.31 Total: 4.00 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -0.08 Total: 0.09 kcal Total: -56.61 2.17 -54.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360129693.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.399 kcal (2) G-P(sol) polarization free energy of solvation -56.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds