Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47041 * 90.00185 * 3 2 1 5 5 H 1.48498 * 109.47207 * 330.00383 * 3 2 1 6 6 H 1.48498 * 109.47070 * 210.00140 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 342.88987 * 7 2 1 9 9 C 1.50697 * 120.00084 * 162.89206 * 7 2 1 10 10 H 1.09002 * 109.50517 * 54.58587 * 9 7 2 11 11 C 1.53118 * 109.50411 * 294.50621 * 9 7 2 12 12 C 1.53123 * 109.16174 * 182.40360 * 11 9 7 13 13 C 1.53041 * 109.27643 * 57.65272 * 12 11 9 14 14 N 1.46840 * 109.52596 * 300.82086 * 13 12 11 15 15 C 1.46903 * 111.00469 * 185.83969 * 14 13 12 16 16 C 1.50699 * 109.46743 * 293.95617 * 15 14 13 17 17 C 1.33399 * 122.54253 * 260.01551 * 16 15 14 18 18 S 1.75885 * 109.60786 * 180.02562 * 17 16 15 19 19 C 1.75878 * 90.97891 * 0.02562 * 18 17 16 20 20 C 1.33434 * 109.59944 * 359.72818 * 19 18 17 21 21 Cl 1.73603 * 122.55121 * 180.23926 * 20 19 18 22 22 C 1.46854 * 111.19957 * 61.74001 * 14 13 12 23 23 H 0.97000 * 119.99801 * 174.69516 * 1 2 3 24 24 H 1.08997 * 109.52224 * 302.30677 * 11 9 7 25 25 H 1.08996 * 109.52622 * 62.43674 * 11 9 7 26 26 H 1.08996 * 109.50433 * 177.59457 * 12 11 9 27 27 H 1.09000 * 109.50094 * 297.67434 * 12 11 9 28 28 H 1.08999 * 109.46132 * 60.84022 * 13 12 11 29 29 H 1.09004 * 109.45813 * 180.80529 * 13 12 11 30 30 H 1.08996 * 109.46758 * 53.95044 * 15 14 13 31 31 H 1.08998 * 109.47346 * 173.95396 * 15 14 13 32 32 H 1.08003 * 125.19432 * 359.97438 * 17 16 15 33 33 H 1.08007 * 125.19769 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.45992 * 178.24207 * 22 14 13 35 35 H 1.09003 * 109.45808 * 58.27590 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3845 10 1 4.0153 -0.5181 0.2359 11 6 3.6098 -0.8330 -1.8578 12 6 5.0857 -0.9229 -2.2554 13 6 5.5941 -2.3424 -1.9933 14 7 5.4313 -2.6672 -0.5706 15 6 6.0348 -3.9688 -0.2552 16 6 5.2726 -5.0602 -0.9616 17 6 4.3589 -5.8119 -0.3453 18 16 3.6852 -6.9726 -1.4821 19 6 4.7129 -6.3545 -2.7687 20 6 5.4643 -5.3561 -2.3007 21 17 6.6001 -4.4971 -3.2937 22 6 4.0170 -2.6336 -0.1766 23 1 -0.4850 -0.8365 -0.0777 24 1 3.0241 -1.5139 -2.4754 25 1 3.2541 0.1871 -2.0023 26 1 5.1923 -0.6879 -3.3144 27 1 5.6655 -0.2133 -1.6650 28 1 5.0229 -3.0495 -2.5949 29 1 6.6486 -2.4059 -2.2620 30 1 7.0731 -3.9777 -0.5867 31 1 5.9956 -4.1363 0.8211 32 1 4.0767 -5.7220 0.6934 33 1 4.7299 -6.7238 -3.7835 34 1 3.9261 -2.9086 0.8742 35 1 3.4532 -3.3394 -0.7867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = 30.896028 kcal Electronic energy + Delta-G solvation = -18876.362838 eV Core-core repulsion = 16026.801087 eV Total energy + Delta-G solvation = -2849.561751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.60811 -37.34723 -36.17762 -33.67301 -32.09211 -30.18041 -29.60081 -26.55097 -24.61236 -23.58067 -22.04162 -20.81049 -19.11516 -18.72243 -17.73731 -17.40618 -15.84980 -15.40995 -14.66657 -14.22038 -13.84540 -13.56489 -13.36135 -13.15098 -12.92028 -12.65887 -12.42538 -12.12321 -12.11431 -11.59363 -11.43546 -11.14450 -11.00370 -10.68998 -10.55012 -10.15468 -9.94940 -9.73183 -9.59997 -9.18370 -8.85354 -8.66639 -8.46369 -8.18500 -7.77217 -6.38258 -4.00269 0.78836 1.22765 1.68573 2.38186 2.53646 3.48094 3.50482 3.66717 4.50402 4.57553 4.66041 5.03391 5.23329 5.31816 5.38026 5.59265 5.65765 5.70999 5.83584 5.95870 6.09045 6.13742 6.20126 6.28345 6.38771 6.48789 6.59848 6.73835 6.93098 6.99967 7.37211 7.52168 7.64318 7.72233 8.27239 8.43179 8.95629 9.67169 10.99576 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.005953 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.080917 B = 4702.750923 C = 5416.263093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.033 3.967 3 Si 1.041 2.959 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.268 1.268 7 C -0.597 4.597 8 H 0.052 0.948 9 C 0.028 3.972 10 H 0.029 0.971 11 C -0.116 4.116 12 C -0.122 4.122 13 C 0.054 3.946 14 N -0.527 5.527 15 C 0.110 3.890 16 C -0.130 4.130 17 C -0.187 4.187 18 S 0.131 5.869 19 C -0.217 4.217 20 C -0.033 4.033 21 Cl -0.047 7.047 22 C 0.076 3.924 23 H 0.266 0.734 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.060 0.940 35 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.843 -12.751 -4.701 18.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.171 4.171 3 Si 0.870 3.130 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.635 4.635 8 H 0.071 0.929 9 C 0.008 3.992 10 H 0.047 0.953 11 C -0.154 4.154 12 C -0.160 4.160 13 C -0.074 4.074 14 N -0.249 5.249 15 C -0.021 4.021 16 C -0.144 4.144 17 C -0.323 4.323 18 S 0.394 5.606 19 C -0.353 4.353 20 C -0.073 4.073 21 Cl -0.019 7.019 22 C -0.051 4.051 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.190 0.810 33 H 0.189 0.811 34 H 0.079 0.921 35 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 11.883 -11.807 -4.357 17.309 hybrid contribution 0.676 -1.225 -0.812 1.617 sum 12.559 -13.032 -5.169 18.822 Atomic orbital electron populations 1.70817 1.07211 1.30325 1.46087 1.25729 0.96016 1.02426 0.92950 0.84132 0.76049 0.75684 0.77175 1.21423 1.21575 1.19305 1.21962 0.94431 0.96177 1.50910 0.92950 1.19026 0.96423 0.91755 0.91986 0.95276 1.22016 0.92807 1.00815 0.99783 1.21713 0.98734 0.96157 0.99414 1.22561 0.99701 0.96927 0.88163 1.62417 1.18562 1.25144 1.18747 1.21089 0.97149 0.84535 0.99278 1.19568 1.01018 1.00822 0.92987 1.25505 1.01880 1.00868 1.04086 1.84294 1.40344 1.35665 1.00266 1.25492 1.02759 1.02667 1.04411 1.19687 0.97914 0.97360 0.92338 1.98353 1.59296 1.75389 1.68860 1.22131 0.84477 0.99636 0.98848 0.92380 0.93594 0.92763 0.93130 0.92050 0.94386 0.91613 0.90020 0.89786 0.81005 0.81093 0.92127 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.22 13.70 55.43 0.76 -27.46 16 2 C 0.03 0.97 5.35 -17.82 -0.10 0.87 16 3 Si 1.04 25.58 26.31 -169.99 -4.47 21.11 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -6.08 5.50 56.52 0.31 -5.77 16 7 C -0.60 -16.80 8.83 -34.44 -0.30 -17.11 16 8 H 0.05 1.58 7.99 -52.48 -0.42 1.16 16 9 C 0.03 0.66 1.81 -91.69 -0.17 0.50 16 10 H 0.03 0.72 6.71 -51.93 -0.35 0.37 16 11 C -0.12 -2.60 4.72 -26.61 -0.13 -2.73 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.05 0.93 3.54 -3.84 -0.01 0.91 16 14 N -0.53 -9.29 4.86 -236.11 -1.15 -10.44 16 15 C 0.11 1.58 5.44 -4.97 -0.03 1.55 16 16 C -0.13 -1.81 3.82 -106.23 -0.41 -2.22 16 17 C -0.19 -2.42 10.17 29.04 0.30 -2.12 16 18 S 0.13 1.51 23.34 -107.50 -2.51 -1.00 16 19 C -0.22 -2.60 11.08 29.05 0.32 -2.28 16 20 C -0.03 -0.44 5.21 -41.17 -0.21 -0.66 16 21 Cl -0.05 -0.61 23.64 -51.86 -1.23 -1.83 16 22 C 0.08 1.57 4.04 -3.83 -0.02 1.55 16 23 H 0.27 8.23 8.73 -40.82 -0.36 7.87 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 1.26 5.09 -51.93 -0.26 0.99 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.04 0.67 5.23 -51.93 -0.27 0.40 16 29 H 0.07 1.01 6.56 -51.93 -0.34 0.67 16 30 H 0.08 1.07 7.68 -51.93 -0.40 0.68 16 31 H 0.08 1.10 8.07 -51.93 -0.42 0.69 16 32 H 0.17 2.01 8.06 -52.48 -0.42 1.59 16 33 H 0.17 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 35 H 0.03 0.56 6.88 -51.93 -0.36 0.20 16 LS Contribution 293.25 15.07 4.42 4.42 Total: -1.00 -30.18 293.25 -9.69 -39.87 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.60 Total: -0.49 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -0.91 Total: -24.17 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.39 Total: -37.90 kcal Atomic # 14 Polarization: 25.58 SS G_CDS: -4.47 Total: 21.11 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.51 Total: -1.00 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.23 Total: -1.83 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.18 -9.69 -39.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.764 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds