Wall clock time and date at job start Tue Mar 31 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00034 * 2 1 4 4 H 1.48505 * 109.47041 * 90.00185 * 3 2 1 5 5 H 1.48498 * 109.47207 * 330.00383 * 3 2 1 6 6 H 1.48498 * 109.47070 * 210.00140 * 3 2 1 7 7 C 1.37879 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99684 * 342.88987 * 7 2 1 9 9 C 1.50697 * 120.00084 * 162.89206 * 7 2 1 10 10 H 1.09002 * 109.50517 * 54.58587 * 9 7 2 11 11 C 1.53118 * 109.50411 * 294.50621 * 9 7 2 12 12 C 1.53123 * 109.16174 * 182.40360 * 11 9 7 13 13 C 1.53041 * 109.27643 * 57.65272 * 12 11 9 14 14 N 1.46840 * 109.52596 * 300.82086 * 13 12 11 15 15 C 1.46903 * 111.00469 * 185.83969 * 14 13 12 16 16 C 1.50699 * 109.46743 * 293.95617 * 15 14 13 17 17 C 1.33399 * 122.54253 * 260.01551 * 16 15 14 18 18 S 1.75885 * 109.60786 * 180.02562 * 17 16 15 19 19 C 1.75878 * 90.97891 * 0.02562 * 18 17 16 20 20 C 1.33434 * 109.59944 * 359.72818 * 19 18 17 21 21 Cl 1.73603 * 122.55121 * 180.23926 * 20 19 18 22 22 C 1.46854 * 111.19957 * 61.74001 * 14 13 12 23 23 H 0.97000 * 119.99801 * 174.69516 * 1 2 3 24 24 H 1.08997 * 109.52224 * 302.30677 * 11 9 7 25 25 H 1.08996 * 109.52622 * 62.43674 * 11 9 7 26 26 H 1.08996 * 109.50433 * 177.59457 * 12 11 9 27 27 H 1.09000 * 109.50094 * 297.67434 * 12 11 9 28 28 H 1.08999 * 109.46132 * 60.84022 * 13 12 11 29 29 H 1.09004 * 109.45813 * 180.80529 * 13 12 11 30 30 H 1.08996 * 109.46758 * 53.95044 * 15 14 13 31 31 H 1.08998 * 109.47346 * 173.95396 * 15 14 13 32 32 H 1.08003 * 125.19432 * 359.97438 * 17 16 15 33 33 H 1.08007 * 125.19769 * 179.97438 * 19 18 17 34 34 H 1.08997 * 109.45992 * 178.24207 * 22 14 13 35 35 H 1.09003 * 109.45808 * 58.27590 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 1.4466 2.6527 -0.6999 6 1 3.5467 1.4402 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.5004 -2.1088 0.2742 9 6 3.4615 -1.2228 -0.3845 10 1 4.0153 -0.5181 0.2359 11 6 3.6098 -0.8330 -1.8578 12 6 5.0857 -0.9229 -2.2554 13 6 5.5941 -2.3424 -1.9933 14 7 5.4313 -2.6672 -0.5706 15 6 6.0348 -3.9688 -0.2552 16 6 5.2726 -5.0602 -0.9616 17 6 4.3589 -5.8119 -0.3453 18 16 3.6852 -6.9726 -1.4821 19 6 4.7129 -6.3545 -2.7687 20 6 5.4643 -5.3561 -2.3007 21 17 6.6001 -4.4971 -3.2937 22 6 4.0170 -2.6336 -0.1766 23 1 -0.4850 -0.8365 -0.0777 24 1 3.0241 -1.5139 -2.4754 25 1 3.2541 0.1871 -2.0023 26 1 5.1923 -0.6879 -3.3144 27 1 5.6655 -0.2133 -1.6650 28 1 5.0229 -3.0495 -2.5949 29 1 6.6486 -2.4059 -2.2620 30 1 7.0731 -3.9777 -0.5867 31 1 5.9956 -4.1363 0.8211 32 1 4.0767 -5.7220 0.6934 33 1 4.7299 -6.7238 -3.7835 34 1 3.9261 -2.9086 0.8742 35 1 3.4532 -3.3394 -0.7867 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175538.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:01 Heat of formation + Delta-G solvation = 12.004894 kcal Electronic energy + Delta-G solvation = -18877.182019 eV Core-core repulsion = 16026.801087 eV Total energy + Delta-G solvation = -2850.380932 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.84202 -38.67404 -37.19514 -35.46875 -33.84534 -31.92962 -30.71273 -27.84208 -26.49651 -24.80258 -23.48097 -22.48156 -20.50047 -20.01677 -19.62591 -18.70933 -17.00214 -16.75124 -16.08578 -15.79102 -15.39724 -15.11396 -14.64044 -14.48352 -14.24731 -14.14630 -13.80726 -13.65446 -13.53766 -13.11703 -12.66199 -12.62789 -12.29390 -12.25862 -11.93134 -11.63483 -11.57896 -11.49649 -11.39979 -10.84774 -10.69989 -10.40967 -9.84575 -9.48593 -9.11691 -8.70189 -6.32651 -0.18140 0.28730 0.71183 1.36107 1.49983 1.54315 1.56700 1.74365 2.52649 3.08387 3.14732 3.70713 3.97308 4.12703 4.14678 4.24721 4.35747 4.42632 4.54461 4.64787 4.72215 4.78072 4.84286 4.89681 5.01368 5.07254 5.08338 5.15245 5.24174 5.32375 5.53563 5.77984 5.93985 6.07678 6.25014 6.33403 6.62163 7.43221 8.66339 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.005953 C = 0.005168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.080917 B = 4702.750923 C = 5416.263093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.018 4.018 3 Si 1.081 2.919 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.237 1.237 7 C -0.597 4.597 8 H 0.015 0.985 9 C 0.024 3.976 10 H 0.028 0.972 11 C -0.114 4.114 12 C -0.118 4.118 13 C 0.058 3.942 14 N -0.530 5.530 15 C 0.111 3.889 16 C -0.143 4.143 17 C -0.202 4.202 18 S 0.158 5.842 19 C -0.216 4.216 20 C -0.052 4.052 21 Cl -0.044 7.044 22 C 0.093 3.907 23 H 0.251 0.749 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.193 0.807 34 H 0.056 0.944 35 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -12.850 -5.460 20.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.215 4.215 3 Si 0.902 3.098 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.161 1.161 7 C -0.635 4.635 8 H 0.033 0.967 9 C 0.004 3.996 10 H 0.046 0.954 11 C -0.152 4.152 12 C -0.156 4.156 13 C -0.070 4.070 14 N -0.252 5.252 15 C -0.019 4.019 16 C -0.157 4.157 17 C -0.339 4.339 18 S 0.422 5.578 19 C -0.353 4.353 20 C -0.092 4.092 21 Cl -0.015 7.015 22 C -0.035 4.035 23 H 0.060 0.940 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.116 0.884 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.210 0.790 34 H 0.074 0.926 35 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 14.324 -11.943 -5.116 19.339 hybrid contribution -0.132 -1.346 -0.569 1.468 sum 14.192 -13.289 -5.685 20.257 Atomic orbital electron populations 1.70945 1.08476 1.29425 1.49088 1.27129 0.95967 1.06217 0.92214 0.83661 0.76199 0.71701 0.78224 1.20082 1.21662 1.16052 1.22207 0.96829 0.94632 1.49858 0.96662 1.18993 0.93537 0.93960 0.93065 0.95389 1.21888 0.95644 0.99613 0.98070 1.21700 0.95539 0.97387 1.00999 1.22599 1.00886 0.95780 0.87724 1.62350 1.16037 1.27609 1.19210 1.21135 0.97603 0.83093 1.00087 1.19562 1.01537 1.01205 0.93417 1.25738 1.01879 1.01362 1.04921 1.84216 1.39529 1.34583 0.99464 1.25835 1.01940 1.02025 1.05483 1.19786 0.98813 0.98212 0.92357 1.98342 1.59151 1.75434 1.68622 1.21750 0.86402 0.96962 0.98361 0.94027 0.95336 0.93720 0.90755 0.91502 0.94876 0.89259 0.88417 0.88828 0.80406 0.79029 0.92581 0.97254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.21 13.70 21.45 0.29 -59.92 16 2 C -0.02 -1.05 5.35 84.65 0.45 -0.60 16 3 Si 1.08 51.08 26.31 68.60 1.80 52.88 16 4 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.24 -9.95 5.50 99.48 0.55 -9.40 16 7 C -0.60 -34.41 8.83 25.60 0.23 -34.18 16 8 H 0.01 0.96 7.99 -2.91 -0.02 0.93 16 9 C 0.02 1.13 1.81 -11.49 -0.02 1.11 16 10 H 0.03 1.34 6.71 -2.39 -0.02 1.33 16 11 C -0.11 -4.97 4.72 30.67 0.14 -4.82 16 12 C -0.12 -4.06 6.09 30.65 0.19 -3.87 16 13 C 0.06 1.81 3.54 86.33 0.31 2.11 16 14 N -0.53 -17.57 4.86 -900.92 -4.38 -21.95 16 15 C 0.11 2.93 5.44 85.56 0.47 3.40 16 16 C -0.14 -3.75 3.82 -20.90 -0.08 -3.83 16 17 C -0.20 -5.02 10.17 66.72 0.68 -4.34 16 18 S 0.16 3.41 23.34 -56.49 -1.32 2.09 16 19 C -0.22 -4.74 11.08 66.73 0.74 -4.00 16 20 C -0.05 -1.29 5.21 21.24 0.11 -1.18 16 21 Cl -0.04 -1.02 23.64 -2.72 -0.06 -1.08 16 22 C 0.09 3.79 4.04 86.32 0.35 4.14 16 23 H 0.25 16.25 8.73 -92.71 -0.81 15.45 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.04 2.00 5.09 -2.39 -0.01 1.98 16 26 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.03 1.09 5.23 -2.39 -0.01 1.08 16 29 H 0.09 2.42 6.56 -2.38 -0.02 2.41 16 30 H 0.10 2.28 7.68 -2.39 -0.02 2.26 16 31 H 0.09 2.27 8.07 -2.39 -0.02 2.25 16 32 H 0.18 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 35 H 0.01 0.40 6.88 -2.39 -0.02 0.39 16 Total: -1.00 -65.66 293.25 0.79 -64.87 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.89 Total: 9.17 kcal Atomic # 6 Polarization: -49.63 SS G_CDS: 3.56 Total: -46.07 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -4.08 Total: -81.87 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 1.80 Total: 52.88 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.32 Total: 2.09 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.06 Total: -1.08 kcal Total: -65.66 0.79 -64.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175538.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.878 kcal (2) G-P(sol) polarization free energy of solvation -65.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds