Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99719 * 2 1 4 4 H 1.48494 * 109.46964 * 274.99096 * 3 2 1 5 5 H 1.48499 * 109.47143 * 34.99506 * 3 2 1 6 6 H 1.48499 * 109.46438 * 154.99421 * 3 2 1 7 7 C 1.37877 * 120.00070 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00181 * 189.55014 * 7 2 1 9 9 C 1.50700 * 119.99788 * 9.55573 * 7 2 1 10 10 H 1.09004 * 109.50554 * 305.50930 * 9 7 2 11 11 C 1.53119 * 109.50565 * 65.62924 * 9 7 2 12 12 C 1.53121 * 109.16611 * 177.59674 * 11 9 7 13 13 C 1.53047 * 109.27244 * 302.34523 * 12 11 9 14 14 N 1.46840 * 109.52244 * 59.17752 * 13 12 11 15 15 C 1.46902 * 110.99943 * 174.16096 * 14 13 12 16 16 C 1.50698 * 109.47034 * 66.04517 * 15 14 13 17 17 C 1.33404 * 122.54217 * 260.02611 * 16 15 14 18 18 S 1.75886 * 109.60723 * 180.02562 * 17 16 15 19 19 C 1.75881 * 90.98082 * 359.97438 * 18 17 16 20 20 C 1.33443 * 109.59719 * 359.73424 * 19 18 17 21 21 Cl 1.73604 * 122.54962 * 180.24455 * 20 19 18 22 22 C 1.46845 * 111.19986 * 298.25336 * 14 13 12 23 23 H 0.97002 * 120.00307 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.52775 * 57.68625 * 11 9 7 25 25 H 1.09006 * 109.52124 * 297.49776 * 11 9 7 26 26 H 1.08991 * 109.50537 * 182.40700 * 12 11 9 27 27 H 1.09002 * 109.50291 * 62.27785 * 12 11 9 28 28 H 1.09001 * 109.45552 * 179.19316 * 13 12 11 29 29 H 1.08997 * 109.46125 * 299.16237 * 13 12 11 30 30 H 1.08997 * 109.47542 * 186.04726 * 15 14 13 31 31 H 1.09001 * 109.47054 * 306.04703 * 15 14 13 32 32 H 1.08004 * 125.19740 * 359.96300 * 17 16 15 33 33 H 1.07997 * 125.20254 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.46527 * 181.75684 * 22 14 13 35 35 H 1.09001 * 109.46764 * 301.73191 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5033 2.6199 0.8029 6 1 3.5954 1.4120 0.5918 7 6 2.0045 -1.1940 -0.0005 8 1 3.0733 -1.2006 0.1546 9 6 1.2667 -2.4900 -0.2178 10 1 0.4550 -2.5722 0.5051 11 6 0.6932 -2.5200 -1.6372 12 6 -0.0029 -3.8639 -1.8698 13 6 0.9993 -4.9980 -1.6420 14 7 1.5183 -4.9260 -0.2702 15 6 2.3777 -6.0793 0.0286 16 6 3.6166 -6.0177 -0.8272 17 6 3.7568 -6.7401 -1.9399 18 16 5.3238 -6.4074 -2.6660 19 6 5.7122 -5.2717 -1.3805 20 6 4.6933 -5.2023 -0.5216 21 17 4.7184 -4.1731 0.8763 22 6 2.2320 -3.6639 -0.0380 23 1 -0.4851 0.8400 0.0004 24 1 1.5007 -2.3983 -2.3591 25 1 -0.0278 -1.7111 -1.7560 26 1 -0.3761 -3.9082 -2.8928 27 1 -0.8348 -3.9682 -1.1733 28 1 0.5031 -5.9567 -1.7928 29 1 1.8241 -4.9010 -2.3479 30 1 2.6615 -6.0581 1.0808 31 1 1.8355 -7.0010 -0.1829 32 1 3.0210 -7.4255 -2.3340 33 1 6.6329 -4.7127 -1.3006 34 1 2.6312 -3.6536 0.9763 35 1 3.0510 -3.5731 -0.7515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175549.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = 13.727885 kcal Electronic energy + Delta-G solvation = -18906.567498 eV Core-core repulsion = 16056.261280 eV Total energy + Delta-G solvation = -2850.306218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 285.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73494 -38.51178 -37.10438 -35.34281 -33.53821 -31.67317 -30.63760 -27.53134 -26.89384 -24.83739 -23.03549 -22.98088 -20.41452 -19.90547 -18.75862 -18.30778 -16.83446 -16.77062 -16.14945 -15.81960 -15.44319 -14.79795 -14.49419 -14.40128 -14.19577 -13.97211 -13.79149 -13.50206 -13.13851 -12.90470 -12.81591 -12.72072 -12.32556 -12.28361 -11.96176 -11.90246 -11.60738 -11.58098 -11.29587 -10.70452 -10.41095 -10.38670 -9.77806 -9.31851 -9.02260 -8.10485 -6.17474 -0.11476 0.36812 0.80363 1.37607 1.38774 1.43342 1.48969 1.68478 2.42860 3.19571 3.27669 3.78616 4.06467 4.21461 4.31853 4.33610 4.46204 4.55216 4.69694 4.73657 4.83802 4.87598 4.97352 5.03028 5.13141 5.15483 5.24864 5.28260 5.43770 5.49608 5.66669 5.98338 6.10584 6.22182 6.40859 6.52892 6.95800 7.48212 8.98550 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.006263 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.786170 B = 4469.882812 C = 5110.268293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.017 3.983 3 Si 0.943 3.057 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.048 0.952 9 C 0.049 3.951 10 H -0.004 1.004 11 C -0.097 4.097 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.538 5.538 15 C 0.112 3.888 16 C -0.147 4.147 17 C -0.189 4.189 18 S 0.172 5.828 19 C -0.227 4.227 20 C -0.054 4.054 21 Cl -0.057 7.057 22 C 0.082 3.918 23 H 0.259 0.741 24 H 0.023 0.977 25 H 0.036 0.964 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.094 0.906 29 H 0.027 0.973 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.182 0.818 34 H 0.063 0.937 35 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 -16.191 -5.568 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.066 0.934 9 C 0.030 3.970 10 H 0.014 0.986 11 C -0.136 4.136 12 C -0.150 4.150 13 C -0.060 4.060 14 N -0.260 5.260 15 C -0.018 4.018 16 C -0.161 4.161 17 C -0.326 4.326 18 S 0.435 5.565 19 C -0.363 4.363 20 C -0.094 4.094 21 Cl -0.028 7.028 22 C -0.046 4.046 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.215 0.785 33 H 0.200 0.800 34 H 0.081 0.919 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.296 -16.508 -6.412 20.001 hybrid contribution 0.278 2.171 1.056 2.430 sum 9.575 -14.337 -5.356 18.053 Atomic orbital electron populations 1.70103 1.07181 1.26989 1.51386 1.25651 0.95472 1.02034 0.95029 0.85780 0.79039 0.80217 0.78115 1.20172 1.20857 1.19392 1.21449 0.93878 0.92516 1.48649 0.93421 1.18649 0.93725 0.91855 0.92786 0.98567 1.21397 0.97963 0.96075 0.98127 1.21594 0.98107 0.94728 1.00556 1.22023 0.96684 0.99035 0.88303 1.62316 1.36047 1.02392 1.25276 1.21112 0.87779 0.94990 0.97965 1.19533 0.98049 0.98890 0.99668 1.25794 1.02032 1.06027 0.98771 1.84025 1.10880 1.37237 1.24340 1.25802 1.03892 1.06990 0.99616 1.20013 0.96769 0.99011 0.93629 1.98388 1.98028 1.65856 1.40575 1.22471 0.94474 0.88235 0.99385 0.93170 0.95773 0.94558 0.91100 0.93069 0.88777 0.95501 0.90473 0.87270 0.78531 0.80038 0.91877 0.96103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 12.19 21.45 0.26 -54.99 16 2 C 0.02 0.97 5.22 84.65 0.44 1.41 16 3 Si 0.94 45.19 29.55 68.60 2.03 47.21 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.53 -30.20 8.48 25.60 0.22 -29.98 16 8 H 0.05 2.72 7.77 -2.91 -0.02 2.70 16 9 C 0.05 2.56 2.13 -11.49 -0.02 2.54 16 10 H 0.00 -0.24 8.09 -2.39 -0.02 -0.25 16 11 C -0.10 -4.73 5.09 30.67 0.16 -4.58 16 12 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 13 C 0.07 2.16 5.04 86.33 0.43 2.59 16 14 N -0.54 -19.14 4.86 -900.92 -4.38 -23.52 16 15 C 0.11 3.08 5.42 85.56 0.46 3.54 16 16 C -0.15 -3.86 3.94 -20.90 -0.08 -3.94 16 17 C -0.19 -3.83 10.25 66.73 0.68 -3.15 16 18 S 0.17 3.22 23.34 -56.49 -1.32 1.90 16 19 C -0.23 -5.47 11.08 66.73 0.74 -4.73 16 20 C -0.05 -1.57 4.95 21.24 0.11 -1.47 16 21 Cl -0.06 -1.89 23.69 -2.72 -0.06 -1.96 16 22 C 0.08 3.53 2.73 86.33 0.24 3.77 16 23 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 24 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 1.98 6.99 -2.38 -0.02 1.96 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.09 2.36 8.06 -2.39 -0.02 2.34 16 29 H 0.03 0.87 7.03 -2.39 -0.02 0.85 16 30 H 0.08 2.23 7.76 -2.39 -0.02 2.21 16 31 H 0.11 2.32 7.99 -2.39 -0.02 2.30 16 32 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.18 3.81 8.06 -2.91 -0.02 3.78 16 34 H 0.06 2.82 5.78 -2.39 -0.01 2.81 16 35 H 0.02 0.92 5.60 -2.39 -0.01 0.91 16 Total: -1.00 -65.31 299.30 1.17 -64.13 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: 1.09 Total: 5.29 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.56 Total: -38.08 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -4.12 Total: -78.51 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.32 Total: 1.90 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.06 Total: -1.96 kcal Total: -65.31 1.17 -64.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175549.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.859 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds