Wall clock time and date at job start Tue Mar 31 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46777 * 65.00539 * 12 11 10 14 14 C 1.34675 * 117.00050 * 179.97438 * 13 12 11 15 15 O 1.21435 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.48063 * 120.00362 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.72221 * 179.72824 * 16 14 13 18 18 C 1.38633 * 119.08469 * 179.73017 * 17 16 14 19 19 C 1.38545 * 118.50782 * 0.53392 * 18 17 16 20 20 C 1.38760 * 119.35010 * 359.72626 * 19 18 17 21 21 Cl 1.73602 * 119.56270 * 179.97438 * 20 19 18 22 22 N 1.31594 * 120.87005 * 0.02562 * 20 19 18 23 23 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 26 26 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 27 27 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 28 28 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 29 29 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 30 30 H 1.08002 * 120.45314 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.73830 * 180.26238 * 18 17 16 32 32 H 1.08002 * 120.32565 * 179.74938 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2407 14 6 4.3975 -6.7792 1.4003 15 8 4.6331 -7.5899 0.5274 16 6 5.2077 -6.7694 2.6395 17 6 6.2344 -7.6970 2.8009 18 6 6.9883 -7.6722 3.9640 19 6 6.6823 -6.7279 4.9304 20 6 5.6420 -5.8374 4.7059 21 17 5.2533 -4.6523 5.9134 22 7 4.9457 -5.8801 3.5901 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.9446 -4.9827 -0.8887 27 1 0.9451 -4.9822 0.8913 28 1 3.3209 -5.7958 -0.8418 29 1 2.1818 -6.9376 -0.0887 30 1 6.4426 -8.4229 2.0287 31 1 7.7933 -8.3762 4.1151 32 1 7.2480 -6.6850 5.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815199932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:58 Heat of formation + Delta-G solvation = -99.722352 kcal Electronic energy + Delta-G solvation = -19072.434530 eV Core-core repulsion = 15638.622775 eV Total energy + Delta-G solvation = -3433.811755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.04105 -39.76209 -37.12116 -36.83903 -36.05517 -33.24159 -32.71881 -31.74203 -30.04826 -26.95351 -25.57606 -23.95106 -22.56783 -22.19973 -21.28233 -18.55648 -17.68728 -16.62500 -16.59735 -16.44919 -16.27064 -15.47817 -15.43551 -14.77951 -14.51669 -14.27324 -13.94867 -13.61123 -12.97256 -12.79401 -12.47104 -11.97481 -11.94461 -11.53522 -11.40237 -11.03867 -10.86898 -10.79679 -10.67627 -10.49087 -10.38911 -10.05251 -9.96621 -9.45774 -9.08380 -8.83157 -8.16647 -6.07704 -4.08848 0.05256 0.63139 1.48016 2.17558 2.49386 3.32259 3.33445 3.38140 3.44549 3.86688 4.29808 4.36339 4.39628 4.46444 4.74015 4.77720 4.88616 5.19759 5.29017 5.35235 5.45704 5.49465 5.83612 5.88603 5.94722 6.09537 6.42118 7.09499 7.10788 7.44869 7.70733 7.82846 8.17128 8.57202 9.03752 9.55642 11.03992 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004003 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.283789 B = 6993.296828 C = 8381.740386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.390 6.390 11 C 0.062 3.938 12 C 0.071 3.929 13 O -0.312 6.312 14 C 0.522 3.478 15 O -0.503 6.503 16 C 0.118 3.882 17 C -0.107 4.107 18 C -0.070 4.070 19 C -0.128 4.128 20 C 0.173 3.827 21 Cl -0.016 7.016 22 N -0.422 5.422 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.008 0.992 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.901 -17.880 9.963 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.310 6.310 11 C -0.016 4.016 12 C -0.002 4.002 13 O -0.226 6.226 14 C 0.364 3.636 15 O -0.391 6.391 16 C -0.019 4.019 17 C -0.127 4.127 18 C -0.096 4.096 19 C -0.149 4.149 20 C 0.005 3.995 21 Cl 0.012 6.988 22 N -0.135 5.135 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.026 0.974 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.177 0.823 31 H 0.175 0.825 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.231 -17.239 9.619 23.223 hybrid contribution 0.543 0.437 0.116 0.707 sum 12.774 -16.802 9.734 23.244 Atomic orbital electron populations 1.69961 1.06091 1.27135 1.50697 1.24935 0.94971 0.99398 0.95147 0.86336 0.79740 0.82249 0.78192 1.20485 1.21059 1.19586 1.21055 0.94113 0.89308 1.50657 0.91525 1.20234 0.88736 0.83491 0.95483 1.87927 1.35266 1.12561 1.95216 1.22309 0.93123 0.85482 1.00649 1.23357 0.93766 0.99112 0.83969 1.86793 1.42168 1.52335 1.41295 1.20625 0.79124 0.78620 0.85198 1.90840 1.68230 1.38201 1.41846 1.20039 0.95685 0.93951 0.92247 1.22226 0.93487 0.98126 0.98872 1.21622 0.98688 0.97359 0.91893 1.22190 0.96688 0.94526 1.01454 1.21744 0.93665 0.93126 0.90968 1.98447 1.93966 1.55777 1.50568 1.67029 1.26366 1.20356 0.99760 0.92675 0.97645 0.97426 0.91800 0.93048 0.90190 0.90139 0.82313 0.82526 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.48 5.69 36.01 0.20 5.68 16 10 O -0.39 -9.80 10.30 -38.79 -0.40 -10.20 16 11 C 0.06 1.17 6.33 37.16 0.24 1.41 16 12 C 0.07 1.17 5.85 37.16 0.22 1.38 16 13 O -0.31 -5.67 10.01 -43.20 -0.43 -6.11 16 14 C 0.52 8.28 7.95 34.76 0.28 8.55 16 15 O -0.50 -8.06 16.11 -19.22 -0.31 -8.37 16 16 C 0.12 1.60 6.75 -83.03 -0.56 1.04 16 17 C -0.11 -1.00 9.63 -39.04 -0.38 -1.37 16 18 C -0.07 -0.45 10.17 -39.32 -0.40 -0.85 16 19 C -0.13 -0.98 9.88 -39.28 -0.39 -1.37 16 20 C 0.17 2.04 7.27 -17.46 -0.13 1.91 16 21 Cl -0.02 -0.19 29.11 -51.86 -1.51 -1.70 16 22 N -0.42 -6.33 10.10 -6.95 -0.07 -6.40 16 23 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.16 1.21 7.64 -52.49 -0.40 0.81 16 31 H 0.16 0.40 8.06 -52.49 -0.42 -0.02 16 32 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 312.89 15.07 4.72 4.72 Total: -1.00 -35.19 312.89 -6.96 -42.14 By element: Atomic # 1 Polarization: -3.56 SS G_CDS: -3.33 Total: -6.88 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -1.34 Total: 2.08 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.67 Total: -33.00 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -1.14 Total: -24.68 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.19 -6.96 -42.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815199932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.580 kcal (2) G-P(sol) polarization free energy of solvation -35.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds