Wall clock time and date at job start Tue Mar 31 2020 05:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99273 * 3 2 1 5 5 H 1.48490 * 109.47377 * 29.99322 * 3 2 1 6 6 H 1.48505 * 109.47178 * 149.99742 * 3 2 1 7 7 C 1.37879 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99914 * 0.02562 * 7 2 1 10 10 O 1.42898 * 109.46866 * 179.97438 * 9 7 2 11 11 C 1.42904 * 113.99912 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47221 * 179.97438 * 11 10 9 13 13 O 1.45206 * 109.46777 * 65.00539 * 12 11 10 14 14 C 1.34675 * 117.00050 * 179.97438 * 13 12 11 15 15 O 1.21435 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.48063 * 120.00362 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.72221 * 179.72824 * 16 14 13 18 18 C 1.38633 * 119.08469 * 179.73017 * 17 16 14 19 19 C 1.38545 * 118.50782 * 0.53392 * 18 17 16 20 20 C 1.38760 * 119.35010 * 359.72626 * 19 18 17 21 21 Cl 1.73602 * 119.56270 * 179.97438 * 20 19 18 22 22 N 1.31594 * 120.87005 * 0.02562 * 20 19 18 23 23 H 0.96999 * 120.00107 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46969 * 60.00161 * 9 7 2 25 25 H 1.08999 * 109.47318 * 300.00071 * 9 7 2 26 26 H 1.09000 * 109.46865 * 60.00255 * 11 10 9 27 27 H 1.08994 * 109.47229 * 300.00235 * 11 10 9 28 28 H 1.09000 * 109.47486 * 305.00590 * 12 11 10 29 29 H 1.09001 * 109.47362 * 184.99867 * 12 11 10 30 30 H 1.08002 * 120.45314 * 359.97438 * 17 16 14 31 31 H 1.08002 * 120.73830 * 180.26238 * 18 17 16 32 32 H 1.08002 * 120.32565 * 179.74938 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0005 11 6 1.5650 -4.8755 0.0011 12 6 2.6479 -5.9563 0.0004 13 8 3.4000 -5.8886 1.2407 14 6 4.3975 -6.7792 1.4003 15 8 4.6331 -7.5899 0.5274 16 6 5.2077 -6.7694 2.6395 17 6 6.2344 -7.6970 2.8009 18 6 6.9883 -7.6722 3.9640 19 6 6.6823 -6.7279 4.9304 20 6 5.6420 -5.8374 4.7059 21 17 5.2533 -4.6523 5.9134 22 7 4.9457 -5.8801 3.5901 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 0.9446 -4.9827 -0.8887 27 1 0.9451 -4.9822 0.8913 28 1 3.3209 -5.7958 -0.8418 29 1 2.1818 -6.9376 -0.0887 30 1 6.4426 -8.4229 2.0287 31 1 7.7933 -8.3762 4.1151 32 1 7.2480 -6.6850 5.8494 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815199932.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:57 Heat of formation + Delta-G solvation = -123.726663 kcal Electronic energy + Delta-G solvation = -19073.475435 eV Core-core repulsion = 15638.622775 eV Total energy + Delta-G solvation = -3434.852660 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.02581 -40.80953 -38.78216 -37.75483 -37.50421 -34.97188 -33.97877 -32.61006 -31.58785 -29.08223 -26.56958 -24.72949 -24.57353 -23.71918 -22.44842 -19.59890 -18.80637 -18.53184 -18.00725 -17.60688 -17.14872 -17.09127 -16.46309 -16.40415 -16.20773 -15.61572 -15.29466 -14.52144 -14.39252 -14.22149 -13.77180 -13.33605 -13.16411 -12.95744 -12.82290 -12.72833 -12.51744 -12.40219 -12.17165 -11.94419 -11.79777 -11.30986 -11.19990 -10.92982 -10.84813 -10.29529 -10.26111 -8.34139 -6.46398 -0.76343 -0.08195 0.66795 1.15118 1.37939 1.40508 1.41246 1.53383 2.33158 2.47463 2.94299 2.99569 3.04766 3.59150 3.65373 3.82148 3.87505 4.02568 4.07000 4.24421 4.37490 4.45682 4.60679 4.80591 4.82163 4.85979 5.14053 5.18436 5.26413 5.52035 5.92979 6.19234 6.47737 6.59938 6.77223 7.25061 8.78303 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.004003 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.283789 B = 6993.296828 C = 8381.740386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.552 4.552 8 H 0.057 0.943 9 C 0.209 3.791 10 O -0.411 6.411 11 C 0.053 3.947 12 C 0.075 3.925 13 O -0.343 6.343 14 C 0.519 3.481 15 O -0.512 6.512 16 C 0.081 3.919 17 C -0.094 4.094 18 C -0.048 4.048 19 C -0.107 4.107 20 C 0.150 3.850 21 Cl -0.031 7.031 22 N -0.474 5.474 23 H 0.272 0.728 24 H -0.005 1.005 25 H -0.013 1.013 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.177 0.823 31 H 0.212 0.788 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.211 -18.847 10.685 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.134 3.866 10 O -0.331 6.331 11 C -0.024 4.024 12 C 0.002 3.998 13 O -0.258 6.258 14 C 0.363 3.637 15 O -0.401 6.401 16 C -0.054 4.054 17 C -0.114 4.114 18 C -0.073 4.073 19 C -0.127 4.127 20 C -0.018 4.018 21 Cl -0.002 7.002 22 N -0.188 5.188 23 H 0.081 0.919 24 H 0.013 0.987 25 H 0.004 0.996 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.194 0.806 31 H 0.228 0.772 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 14.535 -18.238 10.331 25.507 hybrid contribution -0.151 0.605 -0.060 0.626 sum 14.384 -17.633 10.271 24.966 Atomic orbital electron populations 1.70056 1.07655 1.28729 1.50335 1.25934 0.95994 1.03271 0.93775 0.85200 0.78287 0.77047 0.78985 1.18948 1.19600 1.19274 1.21374 0.93976 0.91034 1.52560 0.92464 1.19866 0.88538 0.84379 0.93825 1.87871 1.35609 1.14287 1.95320 1.22658 0.94518 0.83362 1.01819 1.23356 0.93226 0.99560 0.83688 1.86777 1.43362 1.53760 1.41878 1.21144 0.78576 0.77841 0.86175 1.90804 1.68477 1.38400 1.42468 1.19995 0.97636 0.96197 0.91617 1.22546 0.91852 0.96699 1.00310 1.22248 0.98457 0.96944 0.89651 1.22672 0.94591 0.92526 1.02892 1.22088 0.95118 0.94263 0.90342 1.98433 1.94272 1.56682 1.50827 1.66754 1.28608 1.22086 1.01364 0.91921 0.98729 0.99556 0.89424 0.92984 0.90355 0.86614 0.80570 0.77160 0.78971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.98 45.83 29.54 68.60 2.03 47.86 16 4 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -34.42 9.43 25.60 0.24 -34.18 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.21 12.24 5.69 71.24 0.41 12.65 16 10 O -0.41 -21.49 10.30 -145.57 -1.50 -22.99 16 11 C 0.05 2.06 6.33 71.98 0.46 2.52 16 12 C 0.07 2.47 5.85 71.98 0.42 2.89 16 13 O -0.34 -12.94 10.01 -53.19 -0.53 -13.47 16 14 C 0.52 16.79 7.95 70.43 0.56 17.35 16 15 O -0.51 -16.34 16.11 20.05 0.32 -16.02 16 16 C 0.08 2.20 6.75 41.87 0.28 2.48 16 17 C -0.09 -1.52 9.63 22.62 0.22 -1.30 16 18 C -0.05 -0.41 10.17 22.44 0.23 -0.18 16 19 C -0.11 -1.27 9.88 22.47 0.22 -1.05 16 20 C 0.15 3.43 7.27 84.85 0.62 4.05 16 21 Cl -0.03 -0.72 29.11 -2.72 -0.08 -0.79 16 22 N -0.47 -14.52 10.10 -175.89 -1.78 -16.30 16 23 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 24 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 25 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 26 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.18 2.17 7.64 -2.91 -0.02 2.14 16 31 H 0.21 -0.41 8.06 -2.91 -0.02 -0.43 16 32 H 0.19 0.77 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -80.19 312.89 4.00 -76.19 By element: Atomic # 1 Polarization: -5.11 SS G_CDS: 1.14 Total: -3.97 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 4.11 Total: 6.22 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.49 Total: -73.02 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -1.71 Total: -52.48 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -80.19 4.00 -76.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815199932.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.538 kcal (2) G-P(sol) polarization free energy of solvation -80.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds