Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35489 * 116.99626 * 2 1 4 4 C 1.39167 * 119.49687 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.43946 * 179.97438 * 4 3 2 6 6 C 1.40316 * 118.47733 * 359.73024 * 5 4 3 7 7 C 1.47395 * 120.50569 * 180.26521 * 6 5 4 8 8 O 1.21516 * 120.00037 * 180.27193 * 7 6 5 9 9 O 1.34756 * 120.00577 * 0.26934 * 7 6 5 10 10 C 1.45196 * 117.00657 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47359 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47056 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00004 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00018 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00299 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 120.00055 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47054 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47162 * 120.00081 * 16 14 12 19 19 H 1.48504 * 109.46960 * 239.99835 * 16 14 12 20 20 C 1.39790 * 118.98579 * 0.53115 * 6 5 4 21 21 Cl 1.73599 * 119.78023 * 179.73708 * 20 6 5 22 22 N 1.31829 * 120.44437 * 359.45568 * 20 6 5 23 23 H 1.09006 * 109.47111 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47674 * 300.00566 * 1 2 3 25 25 H 1.09003 * 109.47067 * 60.00260 * 1 2 3 26 26 H 1.08005 * 120.28218 * 359.97438 * 4 3 2 27 27 H 1.07996 * 120.75697 * 179.97438 * 5 4 3 28 28 H 1.08995 * 109.47250 * 300.00513 * 10 9 7 29 29 H 1.09003 * 109.46679 * 60.00288 * 10 9 7 30 30 H 1.08995 * 109.47565 * 300.00573 * 11 10 9 31 31 H 1.09003 * 109.46782 * 60.00605 * 11 10 9 32 32 H 0.96998 * 120.00435 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2073 0.0000 4 6 3.4343 1.2680 -0.0005 5 6 4.0547 2.4888 -0.0011 6 6 3.2583 3.6440 -0.0069 7 6 3.8791 4.9808 -0.0135 8 8 3.1806 5.9751 -0.0135 9 8 5.2213 5.1004 -0.0196 10 6 5.7632 6.4475 -0.0266 11 6 7.2918 6.3824 -0.0322 12 6 7.8540 7.7805 -0.0387 13 1 7.1878 8.6305 -0.0385 14 6 9.2191 7.9745 -0.0451 15 7 10.0305 6.9395 -0.0448 16 14 9.9161 9.7077 -0.0525 17 1 8.8019 10.6893 -0.0509 18 1 10.7554 9.9088 1.1559 19 1 10.7452 9.9025 -1.2691 20 6 1.8671 3.5077 -0.0005 21 17 0.8620 4.9231 -0.0006 22 7 1.3131 2.3114 -0.0001 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 4.0191 0.3599 -0.0005 27 1 5.1323 2.5607 -0.0011 28 1 5.4183 6.9733 -0.9169 29 1 5.4258 6.9793 0.8631 30 1 7.6363 5.8567 0.8583 31 1 7.6295 5.8504 -0.9216 32 1 10.9908 7.0759 -0.0489 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910172732.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = -111.635905 kcal Electronic energy + Delta-G solvation = -19221.409933 eV Core-core repulsion = 15787.081568 eV Total energy + Delta-G solvation = -3434.328365 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.18350 -41.11640 -39.18302 -37.79495 -37.52121 -35.43319 -34.13101 -32.51238 -31.88152 -28.50354 -27.26855 -25.60476 -24.52959 -23.16122 -22.28390 -19.74701 -19.38934 -18.53482 -18.25253 -17.62207 -17.56842 -17.21080 -16.51206 -16.29406 -15.52743 -15.43071 -15.08189 -14.69736 -14.63254 -14.36810 -13.97274 -13.16760 -13.05313 -13.00536 -12.87323 -12.71389 -12.59560 -12.49169 -12.07624 -11.74006 -11.53073 -11.44101 -11.39473 -11.23119 -10.95407 -10.59201 -9.83425 -8.25334 -6.37428 -0.78304 -0.17538 0.48262 1.36435 1.41997 1.42702 1.52518 1.59247 1.88122 2.37151 2.41286 3.07773 3.09575 3.45967 3.50136 3.87007 3.99784 4.27612 4.29993 4.38642 4.39402 4.52225 4.74069 4.75413 4.78573 5.03384 5.24699 5.51186 5.51371 5.76438 5.82060 6.09461 6.20787 6.65980 6.76624 7.32124 8.87302 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.032648 B = 0.003281 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.438490 B = 8531.788619 C = 9363.464001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.295 6.295 3 C 0.363 3.637 4 C -0.179 4.179 5 C 0.030 3.970 6 C -0.212 4.212 7 C 0.504 3.496 8 O -0.515 6.515 9 O -0.354 6.354 10 C 0.093 3.907 11 C 0.032 3.968 12 C -0.548 4.548 13 H 0.063 0.937 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.260 3.740 21 Cl 0.004 6.996 22 N -0.551 5.551 23 H 0.133 0.867 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.194 0.806 27 H 0.183 0.817 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.010 0.990 31 H 0.010 0.990 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.530 -15.381 0.115 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.200 6.200 3 C 0.184 3.816 4 C -0.199 4.199 5 C 0.005 3.995 6 C -0.218 4.218 7 C 0.349 3.651 8 O -0.406 6.406 9 O -0.271 6.271 10 C 0.020 3.980 11 C -0.006 4.006 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.191 4.191 15 N -0.565 5.565 16 Si 0.794 3.206 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.096 3.904 21 Cl 0.033 6.967 22 N -0.279 5.279 23 H 0.151 0.849 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.211 0.789 27 H 0.201 0.799 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.435 -15.358 0.115 23.994 hybrid contribution 0.853 1.377 -0.006 1.620 sum -17.582 -13.981 0.109 22.463 Atomic orbital electron populations 1.23256 0.74978 1.05543 1.02754 1.86279 1.25037 1.22627 1.86047 1.20284 0.90048 0.83855 0.87433 1.21255 0.91160 1.00851 1.06677 1.21784 1.02440 0.88865 0.86372 1.19598 0.92324 0.92927 1.16935 1.20936 0.81377 0.89522 0.73256 1.90882 1.63452 1.40017 1.46219 1.86515 1.21730 1.35397 1.83434 1.23207 0.95279 0.78291 1.01204 1.18981 0.87642 0.96990 0.96956 1.21400 0.92433 0.92555 1.52195 0.91829 1.25904 0.97324 1.01700 0.94202 1.70084 1.03850 1.31968 1.50559 0.85325 0.78404 0.78903 0.77972 1.18771 1.20122 1.20130 1.21355 0.87535 0.88537 0.92930 1.98466 1.69231 1.33667 1.95370 1.66748 1.40976 0.97373 1.22762 0.84921 0.92091 0.92110 0.78892 0.79928 0.92050 0.92056 0.97192 0.97195 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.37 113.37 1.18 1.51 16 2 O -0.29 -4.79 10.46 -87.89 -0.92 -5.71 16 3 C 0.36 7.20 7.49 84.83 0.64 7.83 16 4 C -0.18 -2.98 9.97 22.19 0.22 -2.76 16 5 C 0.03 0.62 9.68 22.47 0.22 0.84 16 6 C -0.21 -5.98 5.89 -19.99 -0.12 -6.09 16 7 C 0.50 17.79 7.89 70.23 0.55 18.34 16 8 O -0.52 -20.18 13.78 19.78 0.27 -19.91 16 9 O -0.35 -13.64 9.54 -56.66 -0.54 -14.18 16 10 C 0.09 4.08 5.41 71.98 0.39 4.47 16 11 C 0.03 1.64 5.35 29.85 0.16 1.80 16 12 C -0.55 -30.56 9.11 25.60 0.23 -30.33 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 14 C 0.01 0.43 5.46 84.65 0.46 0.90 16 15 N -0.93 -54.39 13.29 21.45 0.28 -54.11 16 16 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 19 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.26 7.19 7.32 85.07 0.62 7.81 16 21 Cl 0.00 0.10 26.19 -2.72 -0.07 0.03 16 22 N -0.55 -13.25 9.17 -298.57 -2.74 -15.98 16 23 H 0.13 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 25 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 26 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.18 3.38 7.69 -2.91 -0.02 3.35 16 28 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -66.51 305.92 4.01 -62.49 By element: Atomic # 1 Polarization: -3.33 SS G_CDS: 1.15 Total: -2.19 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.55 Total: 4.32 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -2.45 Total: -70.09 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.19 Total: -39.80 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.07 Total: 0.03 kcal Total: -66.51 4.01 -62.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910172732.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.142 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds