Wall clock time and date at job start Tue Mar 31 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.43202 * 120.00265 * 3.85965 * 3 2 1 5 5 N 3.51042 * 140.68496 * 3.86034 * 2 1 3 6 6 C 1.41135 * 119.99663 * 183.86290 * 3 2 1 7 7 C 1.38945 * 120.00071 * 5.26706 * 6 3 2 8 8 H 1.08005 * 119.99989 * 338.80310 * 7 6 3 9 9 C 1.40858 * 120.00202 * 158.80449 * 7 6 3 10 10 N 1.30328 * 119.99834 * 350.89041 * 9 7 6 11 11 Si 1.86799 * 120.00388 * 170.88939 * 9 7 6 12 12 H 1.48492 * 109.47288 * 59.99739 * 11 9 7 13 13 H 1.48499 * 109.47330 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47184 * 299.99739 * 11 9 7 15 15 N 1.38425 * 119.99646 * 185.26796 * 6 3 2 16 16 C 1.38666 * 119.99794 * 119.78446 * 15 6 3 17 17 C 1.39573 * 120.04223 * 353.75194 * 16 15 6 18 18 C 1.38319 * 118.03189 * 179.97438 * 17 16 15 19 19 C 1.40084 * 117.99001 * 0.02562 * 18 17 16 20 20 C 1.47770 * 120.10008 * 179.97438 * 19 18 17 21 21 O 1.21468 * 119.99601 * 0.02562 * 20 19 18 22 22 O 1.34721 * 119.99732 * 179.72330 * 20 19 18 23 23 N 1.32814 * 119.80139 * 0.27497 * 19 18 17 24 24 N 1.28358 * 122.09070 * 359.41900 * 23 19 18 25 25 H 0.96999 * 120.00038 * 185.04755 * 10 9 7 26 26 H 0.96997 * 119.99903 * 299.77425 * 15 6 3 27 27 H 1.07997 * 120.98533 * 359.96088 * 17 16 15 28 28 H 1.08009 * 121.00281 * 180.02562 * 18 17 16 29 29 H 0.96697 * 116.99907 * 180.27559 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2846 -1.2364 -0.0835 5 7 3.8519 -2.2191 -0.1497 6 6 3.2730 1.2205 0.0823 7 6 2.5821 2.4107 0.2734 8 1 1.5333 2.4725 0.0233 9 6 3.2496 3.5369 0.7934 10 7 4.4606 3.4186 1.2603 11 14 2.3991 5.1999 0.8138 12 1 1.1587 5.1116 1.6255 13 1 3.3080 6.2136 1.4067 14 1 2.0546 5.5968 -0.5751 15 7 4.6529 1.2310 -0.0273 16 6 5.2619 1.9466 -1.0470 17 6 4.4855 2.5485 -2.0385 18 6 5.1360 3.2526 -3.0356 19 6 6.5346 3.3179 -2.9891 20 6 7.2771 4.0573 -4.0310 21 8 6.6746 4.6101 -4.9293 22 8 8.6217 4.1234 -3.9811 23 7 7.1916 2.7081 -2.0090 24 7 6.5853 2.0599 -1.0818 25 1 4.8929 4.1761 1.6848 26 1 5.1938 0.7380 0.6093 27 1 3.4087 2.4666 -2.0277 28 1 4.5824 3.7375 -3.8262 29 1 9.0631 4.6218 -4.6824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079025.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:14 Heat of formation + Delta-G solvation = 29.512517 kcal Electronic energy + Delta-G solvation = -20938.486554 eV Core-core repulsion = 17441.464100 eV Total energy + Delta-G solvation = -3497.022453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 285.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93401 -39.72278 -37.90576 -36.09364 -35.56603 -34.91990 -34.06447 -32.80181 -31.93605 -29.67878 -27.45786 -25.37040 -24.07578 -22.35229 -21.39684 -19.37104 -18.77535 -17.60985 -17.52197 -17.25012 -16.50092 -16.39780 -15.77738 -15.32576 -14.44296 -14.08446 -13.94703 -13.56251 -13.05730 -12.95581 -12.80132 -12.51417 -12.03576 -11.93983 -11.86349 -11.73771 -11.60844 -11.56069 -11.35310 -11.11989 -11.10763 -10.62613 -10.56922 -10.32493 -10.00676 -9.40265 -8.72246 -8.08321 -7.42571 -5.71740 0.76618 1.16483 1.85970 2.54041 2.57713 2.61205 2.71334 2.90866 3.20967 3.36117 3.66798 3.87362 3.91716 4.00239 4.13198 4.49997 4.83224 4.92563 4.94271 5.24781 5.30361 5.37508 5.90078 5.96035 6.03193 6.17573 6.27515 6.40679 6.73508 6.91071 7.31849 7.43277 7.80453 7.86266 8.01346 8.75044 8.91506 8.94134 9.01379 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.014444 B = 0.006307 C = 0.005104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.010120 B = 4438.446096 C = 5484.566446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C 0.323 3.677 3 C -0.299 4.299 4 C 0.303 3.697 5 N -0.521 5.521 6 C 0.366 3.634 7 C -0.373 4.373 8 H 0.119 0.881 9 C 0.064 3.936 10 N -0.716 5.716 11 Si 0.925 3.075 12 H -0.249 1.249 13 H -0.267 1.267 14 H -0.248 1.248 15 N -0.611 5.611 16 C 0.407 3.593 17 C -0.173 4.173 18 C -0.033 4.033 19 C -0.054 4.054 20 C 0.560 3.440 21 O -0.520 6.520 22 O -0.496 6.496 23 N -0.138 5.138 24 N -0.302 5.302 25 H 0.308 0.692 26 H 0.415 0.585 27 H 0.166 0.834 28 H 0.156 0.844 29 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.738 9.067 -3.815 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C 0.014 3.986 3 C -0.317 4.317 4 C -0.005 4.005 5 N -0.203 5.203 6 C 0.262 3.738 7 C -0.400 4.400 8 H 0.136 0.864 9 C -0.168 4.168 10 N -0.334 5.334 11 Si 0.745 3.255 12 H -0.173 1.173 13 H -0.191 1.191 14 H -0.171 1.171 15 N -0.232 5.232 16 C 0.166 3.834 17 C -0.206 4.206 18 C -0.061 4.061 19 C -0.202 4.202 20 C 0.402 3.598 21 O -0.407 6.407 22 O -0.305 6.305 23 N 0.012 4.988 24 N -0.159 5.159 25 H 0.121 0.879 26 H 0.253 0.747 27 H 0.184 0.816 28 H 0.173 0.827 29 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.986 7.220 -3.085 9.301 hybrid contribution -0.836 1.630 -0.542 1.910 sum 4.150 8.850 -3.626 10.426 Atomic orbital electron populations 1.81095 1.12086 1.08520 1.18742 1.24586 0.91176 0.92296 0.90503 1.12783 0.83124 0.85955 1.49842 1.25182 0.92700 0.91995 0.90597 1.81139 1.09491 1.10756 1.18918 1.16779 0.79057 0.91132 0.86795 1.20376 0.98994 0.93401 1.27270 0.86351 1.26588 0.94521 1.02914 0.92763 1.69461 1.10940 1.35540 1.17470 0.85953 0.80576 0.77421 0.81533 1.17289 1.19082 1.17102 1.41164 1.05318 1.48558 1.28145 1.19886 0.90722 0.86099 0.86655 1.22075 1.03234 1.00690 0.94560 1.21983 0.92539 0.94075 0.97466 1.21030 0.92055 1.07639 0.99467 1.20079 0.80407 0.76539 0.82754 1.90884 1.69868 1.44576 1.35395 1.84704 1.20690 1.70660 1.54446 1.73125 1.30506 0.99022 0.96110 1.73225 1.06285 1.18574 1.17821 0.87903 0.74676 0.81640 0.82679 0.73278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -11.37 18.54 41.84 0.78 -10.60 15 2 C 0.32 6.67 13.90 -22.47 -0.31 6.36 15 3 C -0.30 -5.86 5.88 -104.95 -0.62 -6.48 15 4 C 0.30 6.34 14.81 -22.45 -0.33 6.00 15 5 N -0.52 -11.58 18.54 41.86 0.78 -10.80 15 6 C 0.37 6.68 4.98 -83.53 -0.42 6.27 15 7 C -0.37 -6.58 6.89 -38.33 -0.26 -6.85 15 8 H 0.12 2.08 7.01 -52.48 -0.37 1.71 15 9 C 0.06 1.08 4.79 -17.20 -0.08 1.00 15 10 N -0.72 -12.51 11.00 55.60 0.61 -11.90 15 11 Si 0.92 13.31 29.58 -169.99 -5.03 8.28 15 12 H -0.25 -3.68 7.11 56.52 0.40 -3.28 15 13 H -0.27 -3.85 7.11 56.52 0.40 -3.45 15 14 H -0.25 -3.55 7.11 56.52 0.40 -3.14 15 15 N -0.61 -10.87 3.32 -9.64 -0.03 -10.91 15 16 C 0.41 7.21 6.24 -154.78 -0.97 6.24 15 17 C -0.17 -2.77 8.65 -39.05 -0.34 -3.11 15 18 C -0.03 -0.49 9.71 -38.86 -0.38 -0.87 15 19 C -0.05 -0.86 6.83 -82.85 -0.57 -1.43 15 20 C 0.56 8.05 8.32 34.63 0.29 8.34 15 21 O -0.52 -8.07 17.17 -19.24 -0.33 -8.40 15 22 O -0.50 -5.79 13.26 -40.55 -0.54 -6.33 15 23 N -0.14 -2.46 11.30 33.31 0.38 -2.09 15 24 N -0.30 -5.62 11.55 31.24 0.36 -5.26 15 25 H 0.31 5.05 8.29 -40.82 -0.34 4.71 15 26 H 0.41 7.35 8.92 -40.82 -0.36 6.99 15 27 H 0.17 2.50 6.27 -52.49 -0.33 2.18 15 28 H 0.16 1.94 7.71 -52.48 -0.40 1.54 15 29 H 0.41 2.47 9.11 45.56 0.42 2.88 15 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -25.20 293.88 -2.77 -27.96 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -0.18 Total: 10.13 kcal Atomic # 6 Polarization: 19.46 SS G_CDS: -3.98 Total: 15.48 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 2.87 Total: -51.56 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.87 Total: -14.73 kcal Atomic # 14 Polarization: 13.31 SS G_CDS: -5.03 Total: 8.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.20 -2.77 -27.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079025.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.476 kcal (2) G-P(sol) polarization free energy of solvation -25.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds