Wall clock time and date at job start Tue Mar 31 2020 05:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00410 * 2 1 4 4 H 1.48499 * 109.47085 * 264.99265 * 3 2 1 5 5 H 1.48500 * 109.46777 * 24.99091 * 3 2 1 6 6 H 1.48498 * 109.47346 * 144.99312 * 3 2 1 7 7 C 1.37877 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00459 * 189.48999 * 7 2 1 9 9 C 1.50701 * 119.99729 * 9.49329 * 7 2 1 10 10 H 1.08997 * 109.47171 * 305.45428 * 9 7 2 11 11 C 1.53009 * 109.47195 * 65.45231 * 9 7 2 12 12 Cl 1.80293 * 109.46929 * 186.33391 * 11 9 7 13 13 O 1.42902 * 109.47197 * 185.45017 * 9 7 2 14 14 C 1.42905 * 113.99640 * 150.00083 * 13 9 7 15 15 C 1.50704 * 109.46569 * 180.02562 * 14 13 9 16 16 N 1.32076 * 119.70598 * 269.72284 * 15 14 13 17 17 C 1.31893 * 121.99285 * 179.72549 * 16 15 14 18 18 C 1.38220 * 120.92299 * 0.57027 * 17 16 15 19 19 C 1.38776 * 118.96082 * 359.71867 * 18 17 16 20 20 C 1.38236 * 119.70193 * 90.00330 * 15 14 13 21 21 O 1.36316 * 132.45893 * 359.97138 * 20 15 14 22 22 C 1.44042 * 105.49986 * 197.14153 * 21 20 15 23 23 O 1.35995 * 132.71605 * 180.02562 * 19 18 17 24 24 H 0.97000 * 119.99535 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46936 * 306.33416 * 11 9 7 26 26 H 1.09002 * 109.46822 * 66.32927 * 11 9 7 27 27 H 1.09001 * 109.47013 * 300.00123 * 14 13 9 28 28 H 1.08993 * 109.47119 * 60.00092 * 14 13 9 29 29 H 1.08005 * 119.54193 * 180.28737 * 17 16 15 30 30 H 1.08004 * 120.51563 * 179.69253 * 18 17 16 31 31 H 1.08998 * 110.55504 * 91.68214 * 22 21 20 32 32 H 1.09001 * 110.55954 * 214.51999 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.6026 1.9852 -1.3947 5 1 1.3978 2.6809 0.5915 6 1 3.4899 1.4730 0.8032 7 6 2.0045 -1.1940 0.0005 8 1 3.0734 -1.2004 0.1547 9 6 1.2665 -2.4903 -0.2141 10 1 0.4563 -2.5714 0.5105 11 6 0.6887 -2.5197 -1.6306 12 17 -0.3481 -3.9816 -1.8265 13 8 2.1685 -3.5857 -0.0449 14 6 1.5495 -4.7783 0.4416 15 6 2.5878 -5.8616 0.5820 16 7 2.8317 -6.6700 -0.4335 17 6 3.7339 -7.6295 -0.3619 18 6 4.4599 -7.8367 0.7958 19 6 4.2310 -7.0131 1.8891 20 6 3.2721 -6.0039 1.7746 21 8 3.2144 -5.3252 2.9554 22 6 4.4273 -5.6649 3.6543 23 8 4.7702 -6.9648 3.1366 24 1 -0.4849 0.8401 -0.0004 25 1 0.0897 -1.6244 -1.7973 26 1 1.5029 -2.5519 -2.3546 27 1 1.0959 -4.5820 1.4131 28 1 0.7802 -5.1006 -0.2601 29 1 3.9045 -8.2650 -1.2183 30 1 5.1936 -8.6275 0.8489 31 1 5.2132 -4.9439 3.4296 32 1 4.2487 -5.7157 4.7284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223752752.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:33 Heat of formation + Delta-G solvation = -78.568359 kcal Electronic energy + Delta-G solvation = -20201.680880 eV Core-core repulsion = 16768.786431 eV Total energy + Delta-G solvation = -3432.894449 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.36843 -39.07965 -37.13378 -36.36242 -34.72016 -33.28911 -31.83731 -30.96841 -29.11890 -26.39085 -25.81040 -25.12055 -23.60017 -22.03636 -20.94946 -18.34204 -17.93769 -17.73664 -16.72021 -16.34117 -15.79600 -14.98460 -14.78032 -14.50598 -14.35501 -14.02487 -13.84647 -13.51988 -13.16414 -13.04781 -12.43405 -12.14812 -11.90215 -11.58113 -11.33970 -11.02940 -10.97696 -10.82863 -10.37310 -10.00609 -9.61370 -9.40439 -9.32710 -9.15818 -8.56737 -8.35144 -8.12316 -6.30708 -4.34476 0.98843 1.07212 2.65069 3.19115 3.26892 3.28596 3.30205 3.45388 3.64810 4.13178 4.25341 4.39743 4.60690 4.74122 4.98539 5.00995 5.04179 5.14386 5.40599 5.58488 5.82377 5.89320 5.99989 6.29639 6.31171 6.35738 6.50796 6.79264 6.94681 7.28042 7.65808 7.94725 8.01181 8.34591 8.82169 9.31597 10.77585 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.017195 B = 0.005462 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.944260 B = 5124.697963 C = 6291.412066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.517 4.517 8 H 0.072 0.928 9 C 0.214 3.786 10 H 0.040 0.960 11 C -0.025 4.025 12 Cl -0.242 7.242 13 O -0.377 6.377 14 C 0.100 3.900 15 C 0.166 3.834 16 N -0.444 5.444 17 C 0.107 3.893 18 C -0.162 4.162 19 C 0.068 3.932 20 C 0.000 4.000 21 O -0.290 6.290 22 C 0.210 3.790 23 O -0.307 6.307 24 H 0.269 0.731 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.086 0.914 29 H 0.172 0.828 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -12.152 3.210 14.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.555 4.555 8 H 0.090 0.910 9 C 0.157 3.843 10 H 0.058 0.942 11 C -0.088 4.088 12 Cl -0.217 7.217 13 O -0.297 6.297 14 C 0.022 3.978 15 C 0.029 3.971 16 N -0.157 5.157 17 C -0.052 4.052 18 C -0.182 4.182 19 C 0.016 3.984 20 C -0.048 4.048 21 O -0.205 6.205 22 C 0.098 3.902 23 O -0.222 6.222 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.104 0.896 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.106 0.894 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.318 -11.962 2.679 13.791 hybrid contribution 0.753 0.780 1.012 1.483 sum 7.071 -11.182 3.691 13.735 Atomic orbital electron populations 1.69963 1.05961 1.27740 1.48470 1.24990 0.95009 0.99595 0.94361 0.86360 0.79728 0.81978 0.78605 1.20166 1.20984 1.19615 1.20980 0.95360 0.88783 1.50372 0.91018 1.20028 0.89811 0.84146 0.90324 0.94189 1.25737 0.93965 0.86182 1.02876 1.98611 1.74720 1.50248 1.98077 1.87897 1.36523 1.19273 1.85977 1.21429 0.92084 0.84340 0.99908 1.20443 0.96598 0.95733 0.84345 1.67770 1.16259 1.03987 1.27681 1.22686 0.90972 0.95094 0.96468 1.21169 1.04325 1.02266 0.90477 1.20074 0.95023 0.97005 0.86323 1.20748 0.99720 0.94916 0.89374 1.87446 1.40086 1.66621 1.26329 1.25787 0.85095 0.81159 0.98122 1.87254 1.73632 1.36089 1.25201 0.92151 0.87366 0.90608 0.92597 0.89613 0.81085 0.83730 0.89358 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.99 12.17 55.43 0.67 -23.31 16 2 C 0.06 1.69 5.14 -17.82 -0.09 1.59 16 3 Si 0.91 20.42 29.55 -169.99 -5.02 15.40 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.52 -13.98 8.81 -34.44 -0.30 -14.28 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C 0.21 5.40 2.23 -27.88 -0.06 5.34 16 10 H 0.04 1.09 7.73 -51.93 -0.40 0.69 16 11 C -0.02 -0.58 6.23 37.16 0.23 -0.35 16 12 Cl -0.24 -5.08 26.16 -51.86 -1.36 -6.44 16 13 O -0.38 -9.11 9.94 -35.23 -0.35 -9.46 16 14 C 0.10 2.09 5.84 36.01 0.21 2.30 16 15 C 0.17 3.10 6.42 -82.49 -0.53 2.57 16 16 N -0.44 -7.60 10.27 -9.42 -0.10 -7.70 16 17 C 0.11 1.36 11.18 -17.53 -0.20 1.17 16 18 C -0.16 -1.94 10.13 -39.39 -0.40 -2.34 16 19 C 0.07 1.00 7.23 -38.85 -0.28 0.72 16 20 C 0.00 0.00 6.84 -39.04 -0.27 -0.27 16 21 O -0.29 -4.82 11.40 -45.07 -0.51 -5.34 16 22 C 0.21 2.47 8.89 101.05 0.90 3.37 16 23 O -0.31 -4.09 11.38 -44.04 -0.50 -4.59 16 24 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.11 2.67 6.78 -51.93 -0.35 2.32 16 26 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.06 1.16 8.02 -51.93 -0.42 0.74 16 28 H 0.09 1.78 5.15 -51.93 -0.27 1.51 16 29 H 0.17 1.48 8.06 -52.48 -0.42 1.06 16 30 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 295.50 15.07 4.45 4.45 Total: -1.00 -30.21 295.50 -6.60 -36.81 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.10 Total: 0.35 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.79 Total: -0.18 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.58 Total: -31.01 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.37 Total: -19.39 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -5.08 SS G_CDS: -1.36 Total: -6.44 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.21 -6.60 -36.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223752752.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.758 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds