Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99648 * 2 1 4 4 H 1.48495 * 109.47346 * 274.13854 * 3 2 1 5 5 H 1.48496 * 109.47417 * 34.14234 * 3 2 1 6 6 H 1.48498 * 109.46994 * 154.14122 * 3 2 1 7 7 C 1.38810 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 170.42585 * 7 2 1 9 9 N 1.36935 * 119.99952 * 350.41594 * 7 2 1 10 10 C 1.47420 * 125.65191 * 349.99110 * 9 7 2 11 11 C 1.54907 * 104.83467 * 204.09132 * 10 9 7 12 12 C 1.55402 * 101.66480 * 323.07267 * 11 10 9 13 13 H 1.08992 * 110.69603 * 277.05062 * 12 11 10 14 14 O 1.42904 * 110.85195 * 153.69643 * 12 11 10 15 15 C 1.35982 * 116.99926 * 155.08464 * 14 12 11 16 16 C 1.38902 * 120.06195 * 90.00201 * 15 14 12 17 17 F 1.35094 * 120.04612 * 359.97438 * 16 15 14 18 18 C 1.38328 * 119.91355 * 180.02562 * 16 15 14 19 19 C 1.38282 * 120.05142 * 359.97438 * 18 16 15 20 20 C 1.38218 * 120.13566 * 0.02562 * 19 18 16 21 21 C 1.38317 * 120.08100 * 359.72917 * 20 19 18 22 22 Cl 1.73599 * 120.02665 * 180.27867 * 21 20 19 23 23 C 1.47021 * 125.64542 * 169.94871 * 9 7 2 24 24 H 0.96996 * 119.99640 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.36795 * 322.93082 * 10 9 7 26 26 H 1.08997 * 110.36592 * 85.14179 * 10 9 7 27 27 H 1.08999 * 111.00629 * 81.06403 * 11 10 9 28 28 H 1.08998 * 111.00373 * 204.91173 * 11 10 9 29 29 H 1.07998 * 119.97324 * 179.97438 * 18 16 15 30 30 H 1.08000 * 119.93548 * 180.02562 * 19 18 16 31 31 H 1.08006 * 119.96403 * 180.02562 * 20 19 18 32 32 H 1.09005 * 109.88125 * 298.39168 * 23 9 7 33 33 H 1.08991 * 109.88735 * 59.40232 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4102 2.0971 -1.3964 5 1 1.4942 2.6259 0.7858 6 1 3.5887 1.4166 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0790 -1.2085 -0.1561 9 7 1.3400 -2.3798 0.1964 10 6 -0.0651 -2.5077 0.6237 11 6 -0.1539 -3.9076 1.2811 12 6 0.7962 -4.7404 0.3763 13 1 0.2762 -5.0788 -0.5199 14 8 1.3413 -5.8486 1.0952 15 6 1.7422 -6.9223 0.3632 16 6 3.0464 -6.9945 -0.1092 17 9 3.9186 -5.9979 0.1574 18 6 3.4508 -8.0878 -0.8539 19 6 2.5581 -9.1079 -1.1273 20 6 1.2598 -9.0381 -0.6583 21 6 0.8510 -7.9499 0.0912 22 17 -0.7779 -7.8671 0.6857 23 6 1.9022 -3.7262 0.0158 24 1 -0.4849 0.8400 0.0004 25 1 -0.3134 -1.7320 1.3481 26 1 -0.7304 -2.4483 -0.2376 27 1 0.2112 -3.8810 2.3077 28 1 -1.1721 -4.2945 1.2402 29 1 4.4645 -8.1448 -1.2220 30 1 2.8759 -9.9608 -1.7086 31 1 0.5650 -9.8366 -0.8732 32 1 2.2078 -3.8643 -1.0214 33 1 2.7590 -3.8619 0.6757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225865078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -32.347422 kcal Electronic energy + Delta-G solvation = -20296.392570 eV Core-core repulsion = 16877.875201 eV Total energy + Delta-G solvation = -3418.517369 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.88114 -39.89743 -38.05959 -36.54493 -36.06896 -32.31359 -30.69307 -30.11571 -29.04938 -27.23154 -24.52026 -23.12792 -22.78240 -20.39307 -20.21837 -18.33144 -17.34083 -17.02696 -16.84609 -15.82525 -15.39462 -14.88447 -14.68841 -14.49964 -14.36857 -13.82787 -13.44728 -12.88992 -12.69261 -12.42225 -12.38475 -11.79787 -11.62418 -11.48125 -11.45010 -11.04819 -10.85258 -10.78047 -10.49730 -10.09972 -9.84815 -9.70110 -9.50155 -8.94431 -8.80409 -8.57755 -6.80996 -5.74531 -3.07230 0.70881 0.79227 1.91746 3.04417 3.41061 3.46712 3.49390 3.66667 4.11705 4.50508 4.51260 4.70222 4.88686 5.02367 5.30146 5.33971 5.47836 5.53732 5.65995 5.71880 5.73632 5.81775 5.92368 6.21939 6.36100 6.45802 6.52486 6.63088 6.76791 7.46234 7.53773 7.61850 7.78267 8.25012 9.19117 9.80511 10.47189 11.38890 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.004731 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.186743 B = 5916.590563 C = 6778.862336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.599 5.599 10 C 0.174 3.826 11 C -0.134 4.134 12 C 0.081 3.919 13 H 0.069 0.931 14 O -0.311 6.311 15 C 0.081 3.919 16 C 0.097 3.903 17 F -0.118 7.118 18 C -0.141 4.141 19 C -0.091 4.091 20 C -0.113 4.113 21 C -0.034 4.034 22 Cl -0.044 7.044 23 C 0.118 3.882 24 H 0.253 0.747 25 H 0.076 0.924 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.021 0.979 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 -20.097 -1.414 20.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.094 0.906 9 N -0.327 5.327 10 C 0.049 3.951 11 C -0.173 4.173 12 C 0.026 3.974 13 H 0.087 0.913 14 O -0.227 6.227 15 C 0.035 3.965 16 C 0.077 3.923 17 F -0.096 7.096 18 C -0.160 4.160 19 C -0.109 4.109 20 C -0.132 4.132 21 C -0.062 4.062 22 Cl -0.015 7.015 23 C -0.009 4.009 24 H 0.064 0.936 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.162 0.838 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.039 0.961 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.542 -19.780 -1.159 19.874 hybrid contribution 0.461 1.030 -0.204 1.147 sum 2.003 -18.750 -1.363 18.906 Atomic orbital electron populations 1.69943 1.04988 1.25260 1.56499 1.24820 0.95646 0.97809 1.02035 0.86104 0.78799 0.83370 0.77512 1.21599 1.21552 1.20535 1.19035 0.91214 0.82583 1.42770 0.90555 1.44349 1.09452 0.99507 1.79351 1.21445 0.85958 0.90594 0.97111 1.23206 0.96982 0.97467 0.99644 1.23686 0.94907 0.83864 0.94903 0.91327 1.86185 1.80560 1.23771 1.32217 1.18503 0.90610 0.90439 0.96950 1.17996 0.87564 0.87653 0.99094 1.91578 1.67335 1.58872 1.91826 1.21230 1.01855 0.93177 0.99781 1.20936 0.92180 0.98524 0.99274 1.21044 0.97063 0.97256 0.97862 1.21208 0.87408 0.96987 1.00564 1.98392 1.18072 1.98190 1.86811 1.21737 0.94931 0.86416 0.97777 0.93649 0.90577 0.95201 0.90819 0.91446 0.83771 0.83920 0.84017 0.96118 0.94269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.25 10.68 55.49 0.59 -26.66 16 2 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 3 Si 0.91 22.38 29.56 -169.99 -5.03 17.35 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.23 -6.56 10.24 -15.06 -0.15 -6.71 16 8 H 0.08 2.14 7.85 -52.49 -0.41 1.73 16 9 N -0.60 -16.01 3.39 -170.08 -0.58 -16.58 16 10 C 0.17 4.30 5.43 -2.53 -0.01 4.29 16 11 C -0.13 -2.68 6.82 -24.45 -0.17 -2.85 16 12 C 0.08 1.58 3.48 -24.76 -0.09 1.49 16 13 H 0.07 1.27 7.98 -51.93 -0.41 0.86 16 14 O -0.31 -5.62 9.12 -19.68 -0.18 -5.80 16 15 C 0.08 1.25 5.62 -39.16 -0.22 1.03 16 16 C 0.10 1.38 7.31 -39.30 -0.29 1.09 16 17 F -0.12 -1.94 15.96 2.25 0.04 -1.91 16 18 C -0.14 -1.45 10.02 -39.53 -0.40 -1.85 16 19 C -0.09 -0.75 10.04 -39.57 -0.40 -1.15 16 20 C -0.11 -1.08 9.82 -39.56 -0.39 -1.47 16 21 C -0.03 -0.44 6.33 -39.37 -0.25 -0.69 16 22 Cl -0.04 -0.56 28.50 -51.86 -1.48 -2.04 16 23 C 0.12 2.68 6.53 -3.06 -0.02 2.66 16 24 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.08 2.06 6.94 -51.93 -0.36 1.70 16 26 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 31 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.92 7.39 -51.93 -0.38 0.54 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -31.48 300.72 -8.23 -39.72 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -3.66 Total: -4.18 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.47 Total: -4.43 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.02 Total: -43.24 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.18 Total: -5.80 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.48 Total: -2.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.48 -8.23 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225865078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.370 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds