Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86803 * 119.99648 * 2 1 4 4 H 1.48495 * 109.47346 * 274.13854 * 3 2 1 5 5 H 1.48496 * 109.47417 * 34.14234 * 3 2 1 6 6 H 1.48498 * 109.46994 * 154.14122 * 3 2 1 7 7 C 1.38810 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99810 * 170.42585 * 7 2 1 9 9 N 1.36935 * 119.99952 * 350.41594 * 7 2 1 10 10 C 1.47420 * 125.65191 * 349.99110 * 9 7 2 11 11 C 1.54907 * 104.83467 * 204.09132 * 10 9 7 12 12 C 1.55402 * 101.66480 * 323.07267 * 11 10 9 13 13 H 1.08992 * 110.69603 * 277.05062 * 12 11 10 14 14 O 1.42904 * 110.85195 * 153.69643 * 12 11 10 15 15 C 1.35982 * 116.99926 * 155.08464 * 14 12 11 16 16 C 1.38902 * 120.06195 * 90.00201 * 15 14 12 17 17 F 1.35094 * 120.04612 * 359.97438 * 16 15 14 18 18 C 1.38328 * 119.91355 * 180.02562 * 16 15 14 19 19 C 1.38282 * 120.05142 * 359.97438 * 18 16 15 20 20 C 1.38218 * 120.13566 * 0.02562 * 19 18 16 21 21 C 1.38317 * 120.08100 * 359.72917 * 20 19 18 22 22 Cl 1.73599 * 120.02665 * 180.27867 * 21 20 19 23 23 C 1.47021 * 125.64542 * 169.94871 * 9 7 2 24 24 H 0.96996 * 119.99640 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.36795 * 322.93082 * 10 9 7 26 26 H 1.08997 * 110.36592 * 85.14179 * 10 9 7 27 27 H 1.08999 * 111.00629 * 81.06403 * 11 10 9 28 28 H 1.08998 * 111.00373 * 204.91173 * 11 10 9 29 29 H 1.07998 * 119.97324 * 179.97438 * 18 16 15 30 30 H 1.08000 * 119.93548 * 180.02562 * 19 18 16 31 31 H 1.08006 * 119.96403 * 180.02562 * 20 19 18 32 32 H 1.09005 * 109.88125 * 298.39168 * 23 9 7 33 33 H 1.08991 * 109.88735 * 59.40232 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4102 2.0971 -1.3964 5 1 1.4942 2.6259 0.7858 6 1 3.5887 1.4166 0.6106 7 6 2.0103 -1.2021 -0.0005 8 1 3.0790 -1.2085 -0.1561 9 7 1.3400 -2.3798 0.1964 10 6 -0.0651 -2.5077 0.6237 11 6 -0.1539 -3.9076 1.2811 12 6 0.7962 -4.7404 0.3763 13 1 0.2762 -5.0788 -0.5199 14 8 1.3413 -5.8486 1.0952 15 6 1.7422 -6.9223 0.3632 16 6 3.0464 -6.9945 -0.1092 17 9 3.9186 -5.9979 0.1574 18 6 3.4508 -8.0878 -0.8539 19 6 2.5581 -9.1079 -1.1273 20 6 1.2598 -9.0381 -0.6583 21 6 0.8510 -7.9499 0.0912 22 17 -0.7779 -7.8671 0.6857 23 6 1.9022 -3.7262 0.0158 24 1 -0.4849 0.8400 0.0004 25 1 -0.3134 -1.7320 1.3481 26 1 -0.7304 -2.4483 -0.2376 27 1 0.2112 -3.8810 2.3077 28 1 -1.1721 -4.2945 1.2402 29 1 4.4645 -8.1448 -1.2220 30 1 2.8759 -9.9608 -1.7086 31 1 0.5650 -9.8366 -0.8732 32 1 2.2078 -3.8643 -1.0214 33 1 2.7590 -3.8619 0.6757 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225865078.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -50.756602 kcal Electronic energy + Delta-G solvation = -20297.190852 eV Core-core repulsion = 16877.875201 eV Total energy + Delta-G solvation = -3419.315651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.00384 -41.03783 -39.40202 -37.67440 -37.47792 -34.33968 -31.59611 -31.48336 -30.64796 -29.02255 -26.51258 -24.09217 -23.79219 -22.21507 -21.93503 -19.49419 -19.02445 -18.37857 -17.92810 -17.11409 -16.74602 -16.47664 -16.13755 -15.89916 -15.58715 -15.15363 -14.94033 -14.36424 -14.08826 -13.92565 -13.64963 -13.47734 -13.08580 -12.83325 -12.70424 -12.62965 -12.39243 -12.28316 -12.06772 -12.00704 -11.85994 -11.56670 -11.00045 -10.74826 -9.83327 -9.77803 -8.95251 -7.93466 -5.29784 -0.21070 -0.09220 0.98434 1.44498 1.46556 1.56676 2.08976 2.45922 2.59307 3.12359 3.26577 3.58125 3.63169 3.76095 3.85039 3.96589 4.00648 4.12137 4.18752 4.52967 4.59916 4.67356 4.82562 4.89535 4.93968 4.97355 5.03980 5.15218 5.37074 5.49352 5.56290 5.62334 6.12852 6.30719 7.01687 7.66896 8.33382 9.18796 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.025843 B = 0.004731 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.186743 B = 5916.590563 C = 6778.862336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.057 4.057 3 Si 0.982 3.018 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.271 1.271 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.180 3.820 11 C -0.119 4.119 12 C 0.100 3.900 13 H 0.077 0.923 14 O -0.321 6.321 15 C 0.040 3.960 16 C 0.066 3.934 17 F -0.142 7.142 18 C -0.134 4.134 19 C -0.067 4.067 20 C -0.103 4.103 21 C -0.043 4.043 22 Cl -0.050 7.050 23 C 0.120 3.880 24 H 0.252 0.748 25 H 0.045 0.955 26 H 0.009 0.991 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.170 0.830 30 H 0.192 0.808 31 H 0.175 0.825 32 H 0.016 0.984 33 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -22.627 -2.387 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.809 3.191 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.196 1.196 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.349 5.349 10 C 0.055 3.945 11 C -0.157 4.157 12 C 0.045 3.955 13 H 0.095 0.905 14 O -0.237 6.237 15 C -0.006 4.006 16 C 0.046 3.954 17 F -0.120 7.120 18 C -0.152 4.152 19 C -0.084 4.084 20 C -0.121 4.121 21 C -0.070 4.070 22 Cl -0.021 7.021 23 C -0.006 4.006 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.027 0.973 27 H 0.090 0.910 28 H 0.115 0.885 29 H 0.188 0.812 30 H 0.209 0.791 31 H 0.192 0.808 32 H 0.034 0.966 33 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 2.140 -22.348 -2.130 22.551 hybrid contribution 0.330 1.642 0.028 1.675 sum 2.470 -20.705 -2.102 20.958 Atomic orbital electron populations 1.70128 1.06347 1.25868 1.57017 1.25680 0.96593 1.01069 1.01740 0.85040 0.77745 0.78777 0.77575 1.20940 1.21393 1.19606 1.19369 0.91573 0.83982 1.43193 0.90730 1.44646 1.10218 1.00461 1.79530 1.21235 0.84868 0.92636 0.95755 1.23003 0.98953 0.94732 0.99049 1.23292 0.93214 0.84046 0.94989 0.90477 1.86155 1.80688 1.24109 1.32797 1.18829 0.91828 0.90409 0.99534 1.18451 0.87217 0.88705 1.00984 1.91511 1.67984 1.60210 1.92325 1.21633 1.03558 0.91982 0.98051 1.21530 0.90862 0.98649 0.97377 1.21530 0.98231 0.96545 0.95818 1.21390 0.86898 0.97461 1.01289 1.98387 1.18407 1.98247 1.87044 1.21771 0.95800 0.85859 0.97125 0.93896 0.93611 0.97262 0.90973 0.88534 0.81211 0.79071 0.80754 0.96648 0.95391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.60 10.68 21.65 0.23 -57.37 16 2 C -0.06 -3.33 5.40 84.86 0.46 -2.87 16 3 Si 0.98 46.71 29.56 68.60 2.03 48.74 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.25 -14.98 10.24 84.03 0.86 -14.12 16 8 H 0.07 4.31 7.85 -2.91 -0.02 4.29 16 9 N -0.62 -34.40 3.39 -692.01 -2.35 -36.75 16 10 C 0.18 9.25 5.43 86.86 0.47 9.72 16 11 C -0.12 -4.80 6.82 32.07 0.22 -4.58 16 12 C 0.10 3.94 3.48 31.87 0.11 4.05 16 13 H 0.08 2.87 7.98 -2.39 -0.02 2.85 16 14 O -0.32 -11.70 9.12 -93.35 -0.85 -12.56 16 15 C 0.04 1.19 5.62 22.54 0.13 1.32 16 16 C 0.07 1.84 7.31 22.45 0.16 2.00 16 17 F -0.14 -4.79 15.96 44.97 0.72 -4.07 16 18 C -0.13 -2.32 10.02 22.30 0.22 -2.10 16 19 C -0.07 -0.77 10.04 22.28 0.22 -0.54 16 20 C -0.10 -1.53 9.82 22.28 0.22 -1.31 16 21 C -0.04 -1.01 6.33 22.40 0.14 -0.87 16 22 Cl -0.05 -1.20 28.50 -2.72 -0.08 -1.28 16 23 C 0.12 5.66 6.53 86.73 0.57 6.23 16 24 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.05 2.59 6.94 -2.39 -0.02 2.58 16 26 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 27 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 29 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.19 0.45 8.06 -2.91 -0.02 0.43 16 31 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.03 1.37 7.39 -2.39 -0.02 1.36 16 Total: -1.00 -71.60 300.72 4.61 -66.99 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.13 Total: -0.63 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 3.78 Total: -3.08 kcal Atomic # 7 Polarization: -92.00 SS G_CDS: -2.12 Total: -94.12 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.85 Total: -12.56 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.72 Total: -4.07 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -71.60 4.61 -66.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225865078.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.229 kcal (2) G-P(sol) polarization free energy of solvation -71.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds