Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00386 * 2 1 4 4 H 1.48500 * 109.46889 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47194 * 210.00181 * 3 2 1 6 6 H 1.48503 * 109.46830 * 329.99793 * 3 2 1 7 7 C 1.38813 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64959 * 359.69192 * 9 7 2 11 11 C 1.55129 * 104.72323 * 155.81810 * 10 9 7 12 12 C 1.55156 * 101.48441 * 37.29419 * 11 10 9 13 13 H 1.09000 * 110.71837 * 82.69763 * 12 11 10 14 14 O 1.42904 * 110.71743 * 205.96861 * 12 11 10 15 15 C 1.35959 * 116.99599 * 198.59105 * 14 12 11 16 16 C 1.38649 * 120.06070 * 354.64452 * 15 14 12 17 17 C 1.38283 * 119.96024 * 179.97438 * 16 15 14 18 18 Cl 1.73592 * 119.96741 * 179.97438 * 17 16 15 19 19 C 1.38376 * 120.06470 * 359.97438 * 17 16 15 20 20 C 1.38241 * 120.11746 * 0.02562 * 19 17 16 21 21 C 1.38334 * 120.03928 * 359.69992 * 20 19 17 22 22 F 1.35107 * 120.03627 * 180.27103 * 21 20 19 23 23 C 1.47023 * 125.64940 * 179.97438 * 9 7 2 24 24 H 0.97001 * 119.99593 * 0.02562 * 1 2 3 25 25 H 1.09005 * 110.36551 * 274.74814 * 10 9 7 26 26 H 1.09001 * 110.36421 * 37.06566 * 10 9 7 27 27 H 1.09005 * 111.18860 * 279.19198 * 11 10 9 28 28 H 1.08991 * 110.94093 * 155.29038 * 11 10 9 29 29 H 1.08003 * 120.01842 * 359.95422 * 16 15 14 30 30 H 1.08002 * 119.93705 * 180.02562 * 19 17 16 31 31 H 1.07995 * 119.98091 * 179.97438 * 20 19 17 32 32 H 1.08998 * 109.88334 * 300.44361 * 23 9 7 33 33 H 1.09005 * 109.88361 * 61.44696 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4400 -0.7001 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1417 -2.5331 0.0064 11 6 -0.4020 -3.9325 -0.6105 12 6 0.7782 -4.7524 -0.0254 13 1 0.5458 -5.0977 0.9820 14 8 1.0999 -5.8538 -0.8773 15 6 1.8247 -6.8658 -0.3304 16 6 2.3124 -6.7510 0.9624 17 6 3.0489 -7.7817 1.5167 18 17 3.6600 -7.6380 3.1351 19 6 3.2992 -8.9277 0.7826 20 6 2.8145 -9.0452 -0.5067 21 6 2.0723 -8.0193 -1.0637 22 9 1.5939 -8.1365 -2.3218 23 6 1.9316 -3.7276 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.5231 -2.4888 1.0266 26 1 -0.6020 -1.7575 -0.6056 27 1 -0.3525 -3.8986 -1.6989 28 1 -1.3592 -4.3332 -0.2773 29 1 2.1173 -5.8569 1.5361 30 1 3.8744 -9.7316 1.2177 31 1 3.0115 -9.9404 -1.0778 32 1 2.5576 -3.8512 -0.8831 33 1 2.5308 -3.8633 0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226696486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -32.998584 kcal Electronic energy + Delta-G solvation = -19966.265163 eV Core-core repulsion = 16547.719557 eV Total energy + Delta-G solvation = -3418.545606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.84469 -40.24099 -38.18535 -36.68858 -36.06333 -32.41329 -30.83531 -30.07812 -29.15282 -27.47864 -24.73452 -23.22210 -22.67447 -20.36873 -20.32919 -18.52177 -17.35097 -17.05843 -16.69390 -16.03020 -15.71361 -14.98237 -14.80710 -14.51637 -14.11850 -13.80399 -13.43088 -13.22610 -13.06788 -12.54415 -12.46668 -11.89049 -11.72581 -11.47636 -11.27232 -11.14706 -11.04484 -10.84464 -10.54943 -10.36696 -10.12564 -9.92108 -9.67755 -9.04452 -8.73641 -8.26721 -6.95145 -5.73571 -3.16374 0.76005 1.00318 1.88822 3.10600 3.24892 3.37060 3.42211 3.44283 4.08263 4.42621 4.45924 4.76394 4.79821 5.09092 5.17729 5.21956 5.40809 5.43865 5.49230 5.63727 5.76926 5.80799 5.93124 6.13196 6.26621 6.35289 6.40993 6.48522 6.59606 7.34958 7.40107 7.53638 7.74360 8.25377 9.12604 9.72761 10.35084 11.30739 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.004379 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.601735 B = 6392.048707 C = 7228.714648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.134 4.134 12 C 0.065 3.935 13 H 0.080 0.920 14 O -0.290 6.290 15 C 0.125 3.875 16 C -0.176 4.176 17 C -0.004 4.004 18 Cl -0.061 7.061 19 C -0.129 4.129 20 C -0.106 4.106 21 C 0.066 3.934 22 F -0.128 7.128 23 C 0.117 3.883 24 H 0.254 0.746 25 H 0.018 0.982 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.036 0.964 33 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -18.099 2.101 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.748 3.252 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.215 1.215 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.009 3.991 13 H 0.098 0.902 14 O -0.202 6.202 15 C 0.077 3.923 16 C -0.195 4.195 17 C -0.031 4.031 18 Cl -0.032 7.032 19 C -0.148 4.148 20 C -0.125 4.125 21 C 0.046 3.954 22 F -0.107 7.107 23 C -0.009 4.009 24 H 0.065 0.935 25 H 0.036 0.964 26 H 0.134 0.866 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.171 0.829 30 H 0.160 0.840 31 H 0.167 0.833 32 H 0.054 0.946 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.596 -17.813 1.992 18.281 hybrid contribution 0.528 0.859 0.255 1.040 sum 4.124 -16.954 2.247 17.592 Atomic orbital electron populations 1.69740 1.04946 1.25031 1.57387 1.24796 0.95760 0.97800 1.02054 0.86030 0.78566 0.83027 0.77623 1.21519 1.20602 1.21525 1.19084 0.90596 0.82151 1.43519 0.90316 1.44365 1.01861 0.99351 1.87126 1.22085 0.84856 0.91773 0.98571 1.23256 0.94618 0.97569 1.01794 1.23840 0.98008 0.83964 0.93258 0.90219 1.86283 1.66299 1.27861 1.39807 1.18940 0.93357 0.88447 0.91594 1.21217 1.02190 1.01117 0.95022 1.20662 0.99248 0.95741 0.87470 1.98385 1.86196 1.97988 1.20635 1.20734 1.02885 0.97496 0.93713 1.20889 0.97622 0.98326 0.95620 1.17054 1.02734 0.94144 0.81454 1.91519 1.86460 1.96075 1.36647 1.21743 0.93667 0.86572 0.98953 0.93531 0.96383 0.86626 0.90560 0.91288 0.82913 0.83991 0.83307 0.94575 0.95477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.37 10.08 55.49 0.56 -25.81 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.24 10.27 -15.06 -0.15 -6.39 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.25 3.39 -169.93 -0.58 -15.83 16 10 C 0.15 3.60 5.91 -2.41 -0.01 3.58 16 11 C -0.13 -2.54 6.82 -24.46 -0.17 -2.71 16 12 C 0.07 1.17 2.76 -24.90 -0.07 1.10 16 13 H 0.08 1.29 6.59 -51.93 -0.34 0.95 16 14 O -0.29 -5.06 9.74 -19.61 -0.19 -5.25 16 15 C 0.12 1.87 6.63 -39.18 -0.26 1.61 16 16 C -0.18 -2.40 8.56 -39.41 -0.34 -2.74 16 17 C 0.00 -0.05 6.32 -39.51 -0.25 -0.30 16 18 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 19 C -0.13 -1.27 9.82 -39.53 -0.39 -1.66 16 20 C -0.11 -1.07 10.02 -39.54 -0.40 -1.47 16 21 C 0.07 0.89 7.31 -39.30 -0.29 0.61 16 22 F -0.13 -1.89 17.11 2.25 0.04 -1.85 16 23 C 0.12 2.47 6.51 -3.07 -0.02 2.45 16 24 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.12 3.07 5.86 -51.93 -0.30 2.77 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.15 2.15 5.32 -52.48 -0.28 1.87 16 30 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 31 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.04 0.79 8.06 -51.93 -0.42 0.38 16 33 H 0.03 0.55 7.44 -51.93 -0.39 0.17 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -29.36 296.52 -8.05 -37.41 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.39 Total: -1.52 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.44 Total: -6.25 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.02 Total: -41.63 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: -0.19 Total: -5.25 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.36 -8.05 -37.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226696486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.412 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds