Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00386 * 2 1 4 4 H 1.48500 * 109.46889 * 89.99681 * 3 2 1 5 5 H 1.48502 * 109.47194 * 210.00181 * 3 2 1 6 6 H 1.48503 * 109.46830 * 329.99793 * 3 2 1 7 7 C 1.38813 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00137 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00049 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64959 * 359.69192 * 9 7 2 11 11 C 1.55129 * 104.72323 * 155.81810 * 10 9 7 12 12 C 1.55156 * 101.48441 * 37.29419 * 11 10 9 13 13 H 1.09000 * 110.71837 * 82.69763 * 12 11 10 14 14 O 1.42904 * 110.71743 * 205.96861 * 12 11 10 15 15 C 1.35959 * 116.99599 * 198.59105 * 14 12 11 16 16 C 1.38649 * 120.06070 * 354.64452 * 15 14 12 17 17 C 1.38283 * 119.96024 * 179.97438 * 16 15 14 18 18 Cl 1.73592 * 119.96741 * 179.97438 * 17 16 15 19 19 C 1.38376 * 120.06470 * 359.97438 * 17 16 15 20 20 C 1.38241 * 120.11746 * 0.02562 * 19 17 16 21 21 C 1.38334 * 120.03928 * 359.69992 * 20 19 17 22 22 F 1.35107 * 120.03627 * 180.27103 * 21 20 19 23 23 C 1.47023 * 125.64940 * 179.97438 * 9 7 2 24 24 H 0.97001 * 119.99593 * 0.02562 * 1 2 3 25 25 H 1.09005 * 110.36551 * 274.74814 * 10 9 7 26 26 H 1.09001 * 110.36421 * 37.06566 * 10 9 7 27 27 H 1.09005 * 111.18860 * 279.19198 * 11 10 9 28 28 H 1.08991 * 110.94093 * 155.29038 * 11 10 9 29 29 H 1.08003 * 120.01842 * 359.95422 * 16 15 14 30 30 H 1.08002 * 119.93705 * 180.02562 * 19 17 16 31 31 H 1.07995 * 119.98091 * 179.97438 * 20 19 17 32 32 H 1.08998 * 109.88334 * 300.44361 * 23 9 7 33 33 H 1.09005 * 109.88361 * 61.44696 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5478 1.4400 -0.7001 6 1 1.4478 2.6526 -0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1417 -2.5331 0.0064 11 6 -0.4020 -3.9325 -0.6105 12 6 0.7782 -4.7524 -0.0254 13 1 0.5458 -5.0977 0.9820 14 8 1.0999 -5.8538 -0.8773 15 6 1.8247 -6.8658 -0.3304 16 6 2.3124 -6.7510 0.9624 17 6 3.0489 -7.7817 1.5167 18 17 3.6600 -7.6380 3.1351 19 6 3.2992 -8.9277 0.7826 20 6 2.8145 -9.0452 -0.5067 21 6 2.0723 -8.0193 -1.0637 22 9 1.5939 -8.1365 -2.3218 23 6 1.9316 -3.7276 0.0005 24 1 -0.4849 0.8401 -0.0004 25 1 -0.5231 -2.4888 1.0266 26 1 -0.6020 -1.7575 -0.6056 27 1 -0.3525 -3.8986 -1.6989 28 1 -1.3592 -4.3332 -0.2773 29 1 2.1173 -5.8569 1.5361 30 1 3.8744 -9.7316 1.2177 31 1 3.0115 -9.9404 -1.0778 32 1 2.5576 -3.8512 -0.8831 33 1 2.5308 -3.8633 0.9009 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226696486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -49.108055 kcal Electronic energy + Delta-G solvation = -19966.963722 eV Core-core repulsion = 16547.719557 eV Total energy + Delta-G solvation = -3419.244165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.90223 -41.42291 -39.40480 -37.99688 -37.24085 -34.34878 -31.81216 -31.49073 -30.63347 -29.12526 -26.61513 -24.36075 -23.70749 -22.18752 -21.77506 -19.68554 -19.08441 -18.22166 -17.89384 -17.22865 -16.89726 -16.63946 -16.31363 -15.72389 -15.47370 -15.18987 -14.81991 -14.42154 -14.20207 -14.13378 -13.71091 -13.54095 -13.17144 -12.99409 -12.74196 -12.63539 -12.34538 -12.17319 -12.05075 -12.02261 -11.84366 -11.66496 -11.46915 -10.79858 -10.00286 -9.31917 -8.97965 -7.82710 -5.28569 -0.18804 0.05951 0.98221 1.46595 1.48257 1.57064 1.88828 2.30835 2.47217 3.08273 3.28468 3.48924 3.56602 3.62083 3.84271 3.87420 3.91377 4.00386 4.32011 4.47810 4.53539 4.62370 4.77434 4.82381 4.87486 4.92766 4.96373 5.04198 5.40489 5.47916 5.52552 5.71392 6.15404 6.24877 7.04476 7.69161 8.31572 9.19450 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.004379 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.601735 B = 6392.048707 C = 7228.714648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.060 4.060 3 Si 0.982 3.018 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.079 0.921 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.122 4.122 12 C 0.084 3.916 13 H 0.099 0.901 14 O -0.306 6.306 15 C 0.095 3.905 16 C -0.183 4.183 17 C -0.010 4.010 18 Cl -0.055 7.055 19 C -0.111 4.111 20 C -0.088 4.088 21 C 0.051 3.949 22 F -0.140 7.140 23 C 0.117 3.883 24 H 0.250 0.750 25 H 0.004 0.996 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.100 0.900 29 H 0.143 0.857 30 H 0.178 0.822 31 H 0.186 0.814 32 H 0.024 0.976 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.882 -20.310 2.585 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.253 4.253 3 Si 0.810 3.190 4 H -0.211 1.211 5 H -0.196 1.196 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.097 0.903 9 N -0.349 5.349 10 C 0.029 3.971 11 C -0.160 4.160 12 C 0.028 3.972 13 H 0.117 0.883 14 O -0.220 6.220 15 C 0.048 3.952 16 C -0.203 4.203 17 C -0.037 4.037 18 Cl -0.026 7.026 19 C -0.129 4.129 20 C -0.106 4.106 21 C 0.031 3.969 22 F -0.119 7.119 23 C -0.009 4.009 24 H 0.060 0.940 25 H 0.022 0.978 26 H 0.102 0.898 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.161 0.839 30 H 0.196 0.804 31 H 0.204 0.796 32 H 0.042 0.958 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.810 -20.061 2.478 20.778 hybrid contribution 0.238 1.413 0.142 1.440 sum 5.049 -18.648 2.620 19.496 Atomic orbital electron populations 1.69982 1.06156 1.25373 1.58052 1.25626 0.96681 1.00910 1.02089 0.85026 0.77570 0.78817 0.77570 1.21094 1.19634 1.21664 1.19426 0.91018 0.83516 1.43476 0.90274 1.44643 1.02791 1.00373 1.87139 1.21855 0.84048 0.93735 0.97413 1.23058 0.96729 0.95135 1.01089 1.23498 0.95789 0.83723 0.94220 0.88301 1.86222 1.67495 1.28207 1.40039 1.19182 0.94790 0.88595 0.92643 1.21141 1.02985 1.01539 0.94619 1.20822 0.98953 0.95968 0.87938 1.98392 1.85992 1.98014 1.20205 1.21173 1.01410 0.97271 0.93094 1.21303 0.95394 0.98255 0.95687 1.17429 1.03668 0.94642 0.81165 1.91490 1.86808 1.96139 1.37415 1.21827 0.94791 0.85732 0.98522 0.93988 0.97791 0.89816 0.91247 0.88176 0.83921 0.80443 0.79647 0.95811 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.60 10.08 21.65 0.22 -55.38 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 3 Si 0.98 45.40 29.55 68.60 2.03 47.43 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 7 C -0.25 -13.90 10.27 84.03 0.86 -13.03 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.62 -32.44 3.39 -691.54 -2.35 -34.79 16 10 C 0.15 7.53 5.91 86.93 0.51 8.04 16 11 C -0.12 -4.63 6.82 32.06 0.22 -4.41 16 12 C 0.08 3.00 2.76 31.78 0.09 3.09 16 13 H 0.10 3.14 6.59 -2.39 -0.02 3.12 16 14 O -0.31 -10.61 9.74 -93.09 -0.91 -11.51 16 15 C 0.09 2.76 6.63 22.53 0.15 2.91 16 16 C -0.18 -4.79 8.56 22.38 0.19 -4.60 16 17 C -0.01 -0.21 6.32 22.31 0.14 -0.06 16 18 Cl -0.06 -1.10 28.95 -2.72 -0.08 -1.18 16 19 C -0.11 -1.73 9.82 22.30 0.22 -1.51 16 20 C -0.09 -1.46 10.02 22.29 0.22 -1.23 16 21 C 0.05 1.28 7.31 22.45 0.16 1.44 16 22 F -0.14 -3.94 17.11 44.97 0.77 -3.17 16 23 C 0.12 5.01 6.51 86.73 0.56 5.57 16 24 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 26 H 0.08 4.64 5.86 -2.39 -0.01 4.63 16 27 H 0.07 2.72 8.14 -2.38 -0.02 2.71 16 28 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 29 H 0.14 3.94 5.32 -2.91 -0.02 3.93 16 30 H 0.18 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.02 1.07 8.06 -2.39 -0.02 1.05 16 33 H 0.04 1.43 7.44 -2.38 -0.02 1.41 16 Total: -1.00 -64.95 296.52 4.63 -60.33 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.14 Total: 5.01 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 3.80 Total: -6.73 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -2.13 Total: -90.17 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.91 Total: -11.51 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.77 Total: -3.17 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -64.95 4.63 -60.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226696486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.218 kcal (2) G-P(sol) polarization free energy of solvation -64.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds