Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86796 * 120.00249 * 2 1 4 4 H 1.48499 * 109.47211 * 270.00174 * 3 2 1 5 5 H 1.48504 * 109.47287 * 30.00110 * 3 2 1 6 6 H 1.48500 * 109.47275 * 150.00246 * 3 2 1 7 7 C 1.37875 * 119.99488 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00462 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99783 * 179.97438 * 7 2 1 10 10 N 1.46891 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.47964 * 111.00048 * 170.00074 * 10 9 7 12 12 C 1.53935 * 86.18156 * 222.41934 * 11 10 9 13 13 O 1.42896 * 113.73371 * 138.07794 * 12 11 10 14 14 C 1.35539 * 116.99899 * 149.99686 * 13 12 11 15 15 N 1.32764 * 120.48137 * 0.02562 * 14 13 12 16 16 C 1.32284 * 120.67751 * 180.02562 * 15 14 13 17 17 O 1.35469 * 119.15641 * 179.71928 * 16 15 14 18 18 N 1.32297 * 121.69061 * 359.97438 * 16 15 14 19 19 C 1.32473 * 120.91465 * 0.02562 * 18 16 15 20 20 C 1.38306 * 119.23013 * 359.97438 * 19 18 16 21 21 Cl 1.73606 * 120.77454 * 179.97438 * 20 19 18 22 22 C 1.47964 * 111.00172 * 70.64340 * 10 9 7 23 23 H 0.97006 * 119.99562 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47049 * 60.00027 * 9 7 2 25 25 H 1.09001 * 109.47126 * 300.00636 * 9 7 2 26 26 H 1.09005 * 113.75660 * 108.10300 * 11 10 9 27 27 H 1.09000 * 113.75596 * 336.73761 * 11 10 9 28 28 H 1.09004 * 113.73179 * 269.25959 * 12 11 10 29 29 H 0.96698 * 114.00002 * 90.00034 * 17 16 15 30 30 H 1.07995 * 120.38628 * 180.02562 * 19 18 16 31 31 H 1.09000 * 113.75631 * 23.25969 * 22 10 9 32 32 H 1.09000 * 113.76051 * 251.90227 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5469 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4604 -2.6257 -0.2414 12 6 5.1648 -3.8140 -1.1742 13 8 5.9108 -3.7881 -2.3927 14 6 6.2141 -4.9840 -2.9540 15 7 5.8245 -6.1157 -2.3796 16 6 6.1188 -7.2850 -2.9238 17 8 5.7108 -8.4208 -2.3084 18 7 6.8057 -7.3738 -4.0510 19 6 7.2266 -6.2859 -4.6790 20 6 6.9400 -5.0434 -4.1434 21 17 7.4726 -3.5917 -4.9325 22 6 3.7457 -3.2320 -1.3040 23 1 -0.4850 0.8401 0.0004 24 1 3.8752 -0.6805 0.8889 25 1 3.8746 -0.6801 -0.8911 26 1 6.0424 -2.8938 0.6404 27 1 5.8485 -1.7479 -0.7580 28 1 5.1995 -4.7826 -0.6752 29 1 4.8373 -8.7274 -2.5878 30 1 7.7864 -6.3683 -5.5988 31 1 3.6323 -2.5315 -2.1314 32 1 2.9577 -3.9843 -1.2713 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228481591.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = -10.094748 kcal Electronic energy + Delta-G solvation = -19678.270843 eV Core-core repulsion = 16280.638384 eV Total energy + Delta-G solvation = -3397.632459 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.61854 -41.20652 -39.23286 -38.18453 -37.59133 -35.00565 -34.51865 -32.18479 -31.38028 -27.68827 -27.14190 -25.65771 -25.17896 -23.21200 -21.20542 -20.79872 -19.50288 -19.03887 -18.85594 -17.55082 -17.39559 -16.98066 -16.54945 -16.37945 -15.82074 -15.37350 -15.16576 -14.69171 -14.27592 -13.96447 -13.94270 -13.59650 -13.22372 -13.13827 -12.92941 -12.67824 -12.55517 -12.36120 -12.15979 -11.83052 -11.61033 -11.46703 -11.28161 -10.84597 -10.57062 -9.98580 -9.78849 -8.33186 -6.38638 -0.58491 -0.22737 0.82992 1.33139 1.35132 1.43097 1.46117 1.89334 2.29673 2.31247 2.79507 2.98688 3.04221 3.27268 3.33925 3.67700 3.90387 3.97499 4.21651 4.36704 4.54220 4.55833 4.71293 4.73717 4.80542 4.91651 5.32141 5.38694 5.63904 5.78510 5.87411 6.41201 6.42317 6.64213 6.67035 7.25446 8.83481 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.022976 B = 0.004021 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.369300 B = 6961.455267 C = 7697.599444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.247 1.247 7 C -0.525 4.525 8 H 0.035 0.965 9 C 0.142 3.858 10 N -0.483 5.483 11 C 0.007 3.993 12 C 0.069 3.931 13 O -0.281 6.281 14 C 0.387 3.613 15 N -0.588 5.588 16 C 0.536 3.464 17 O -0.459 6.459 18 N -0.542 5.542 19 C 0.225 3.775 20 C -0.186 4.186 21 Cl -0.018 7.018 22 C 0.011 3.989 23 H 0.268 0.732 24 H 0.037 0.963 25 H 0.001 0.999 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.130 0.870 29 H 0.437 0.563 30 H 0.229 0.771 31 H 0.067 0.933 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.039 -12.203 -11.210 24.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.187 4.187 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.563 4.563 8 H 0.053 0.947 9 C 0.014 3.986 10 N -0.207 5.207 11 C -0.122 4.122 12 C 0.013 3.987 13 O -0.183 6.183 14 C 0.200 3.800 15 N -0.331 5.331 16 C 0.232 3.768 17 O -0.267 6.267 18 N -0.272 5.272 19 C 0.062 3.938 20 C -0.219 4.219 21 Cl 0.011 6.989 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.019 0.981 26 H 0.135 0.865 27 H 0.100 0.900 28 H 0.148 0.852 29 H 0.302 0.698 30 H 0.245 0.755 31 H 0.085 0.915 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.857 -12.789 -9.928 24.103 hybrid contribution -0.513 1.887 -0.921 2.161 sum 17.344 -10.902 -10.849 23.181 Atomic orbital electron populations 1.70053 1.08209 1.28308 1.52032 1.25874 0.95630 1.03257 0.93972 0.85696 0.79553 0.78357 0.79277 1.19088 1.20536 1.17009 1.21170 0.90916 0.93391 1.50860 0.94690 1.20470 0.94816 0.87292 0.96017 1.68436 1.05694 1.17131 1.29409 1.24391 0.92204 0.96866 0.98701 1.24744 0.89969 1.01658 0.82352 1.86464 1.68168 1.23882 1.39761 1.19847 0.87058 0.84988 0.88118 1.67615 1.29120 0.98705 1.37637 1.20106 0.88193 0.84218 0.84257 1.84671 1.42316 1.35282 1.64423 1.68296 1.16344 1.33130 1.09467 1.23613 0.89861 0.82546 0.97815 1.21930 1.09577 0.93078 0.97317 1.98405 1.88299 1.33926 1.78296 1.24167 0.96509 0.98569 0.92598 0.92268 0.94510 0.98083 0.86487 0.89983 0.85214 0.69822 0.75473 0.91510 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 2 C 0.01 0.61 5.47 84.65 0.46 1.07 16 3 Si 0.95 43.50 27.47 68.60 1.88 45.39 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 7 C -0.53 -30.49 9.40 25.60 0.24 -30.25 16 8 H 0.03 2.27 8.04 -2.91 -0.02 2.25 16 9 C 0.14 6.73 3.65 85.56 0.31 7.05 16 10 N -0.48 -19.86 6.25 -916.28 -5.73 -25.59 16 11 C 0.01 0.21 7.81 86.41 0.67 0.89 16 12 C 0.07 2.11 4.38 31.24 0.14 2.25 16 13 O -0.28 -8.01 9.70 -88.44 -0.86 -8.87 16 14 C 0.39 9.86 7.52 84.85 0.64 10.50 16 15 N -0.59 -15.04 8.78 -426.29 -3.74 -18.78 16 16 C 0.54 11.73 8.71 180.59 1.57 13.31 16 17 O -0.46 -8.23 13.64 -87.68 -1.20 -9.43 16 18 N -0.54 -10.49 10.46 -313.62 -3.28 -13.77 16 19 C 0.23 3.46 11.11 84.61 0.94 4.40 16 20 C -0.19 -3.73 6.38 22.58 0.14 -3.59 16 21 Cl -0.02 -0.34 28.64 -2.72 -0.08 -0.41 16 22 C 0.01 0.40 7.29 86.40 0.63 1.03 16 23 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 24 H 0.04 1.73 7.20 -2.39 -0.02 1.71 16 25 H 0.00 0.07 7.12 -2.39 -0.02 0.05 16 26 H 0.12 3.11 8.14 -2.38 -0.02 3.09 16 27 H 0.08 2.48 7.79 -2.39 -0.02 2.46 16 28 H 0.13 3.87 6.91 -2.38 -0.02 3.85 16 29 H 0.44 3.27 9.06 -74.06 -0.67 2.60 16 30 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.07 2.66 7.78 -2.39 -0.02 2.64 16 32 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 Total: -1.00 -71.71 297.91 -6.50 -78.20 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.45 Total: 5.39 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.75 Total: 6.66 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -12.45 Total: -116.92 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -2.05 Total: -18.30 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.39 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -0.08 Total: -0.41 kcal Total: -71.71 -6.50 -78.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228481591.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.107 kcal (2) G-P(sol) polarization free energy of solvation -71.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds