Wall clock time and date at job start Tue Mar 31 2020 06:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.38716 * 120.01790 * 90.00267 * 13 12 11 15 15 O 1.35952 * 120.02614 * 359.97438 * 14 13 12 16 16 C 1.38683 * 119.95042 * 179.97438 * 14 13 12 17 17 C 1.38195 * 119.99541 * 359.97438 * 16 14 13 18 18 C 1.38401 * 120.03697 * 359.97438 * 17 16 14 19 19 F 1.35100 * 119.97190 * 180.02562 * 18 17 16 20 20 C 1.38228 * 120.02359 * 269.72540 * 13 12 11 21 21 Cl 1.73596 * 119.99713 * 0.02562 * 20 13 12 22 22 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 23 23 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 24 24 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 25 25 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 26 26 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 27 27 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 28 28 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 29 29 H 0.96696 * 113.99367 * 90.00549 * 15 14 13 30 30 H 1.08003 * 120.00526 * 180.02562 * 16 14 13 31 31 H 1.07993 * 119.98412 * 179.97438 * 17 16 14 32 32 H 1.09007 * 113.75652 * 270.36911 * 22 11 10 33 33 H 1.08993 * 113.76177 * 139.00817 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.2365 -5.0975 -4.0205 15 8 0.5208 -3.8020 -4.3188 16 6 -0.6874 -5.7981 -4.7814 17 6 -0.9756 -7.1152 -4.4780 18 6 -0.3422 -7.7359 -3.4154 19 9 -0.6246 -9.0237 -3.1203 20 6 0.5840 -7.0386 -2.6561 21 17 1.3814 -7.8201 -1.3269 22 6 2.1611 -3.7399 -0.0455 23 1 -0.4850 0.8400 -0.0004 24 1 0.4835 -2.5465 0.7729 25 1 -0.3212 -2.8279 -1.5258 26 1 1.3294 -2.4995 -2.2139 27 1 2.3663 -4.2117 -2.7493 28 1 2.6199 -5.6522 -1.7349 29 1 1.2495 -3.6935 -4.9451 30 1 -1.1811 -5.3147 -5.6115 31 1 -1.6953 -7.6605 -5.0703 32 1 3.1447 -3.5475 -0.4741 33 1 2.2059 -4.2869 0.8962 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237122112.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:50 Heat of formation + Delta-G solvation = -54.152911 kcal Electronic energy + Delta-G solvation = -20107.114463 eV Core-core repulsion = 16687.651537 eV Total energy + Delta-G solvation = -3419.462926 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.00750 -41.25795 -39.92253 -38.04589 -37.07669 -34.86480 -33.45369 -30.74024 -29.82406 -27.38680 -26.66040 -24.68382 -23.79818 -22.37538 -20.39487 -19.53504 -18.76361 -18.21808 -18.12303 -17.07778 -16.65971 -16.59439 -16.18146 -15.81395 -15.53994 -15.35794 -14.85613 -14.43517 -14.00270 -13.90337 -13.57558 -13.37637 -13.12204 -13.10126 -12.84412 -12.45725 -12.29613 -12.21421 -11.83259 -11.65685 -11.47290 -11.14882 -10.92764 -10.51102 -9.90855 -9.58577 -9.49580 -8.11910 -6.23567 -0.15987 -0.06796 0.96486 1.42764 1.44679 1.56115 2.22087 2.44543 2.96068 3.15810 3.18205 3.34620 3.57368 3.80931 3.98674 4.17238 4.30735 4.44982 4.50326 4.62125 4.76189 4.78730 4.84251 4.90516 4.98298 5.01091 5.17741 5.32095 5.54540 5.58015 5.66151 5.87811 6.32325 6.38919 6.80200 6.85517 7.44890 8.97889 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.004562 C = 0.004126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.460505 B = 6136.337368 C = 6784.459621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.015 3.985 10 C 0.049 3.951 11 N -0.483 5.483 12 C 0.063 3.937 13 C -0.078 4.078 14 C 0.115 3.885 15 O -0.495 6.495 16 C -0.107 4.107 17 C -0.117 4.117 18 C 0.081 3.919 19 F -0.133 7.133 20 C -0.058 4.058 21 Cl -0.050 7.050 22 C 0.016 3.984 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.409 0.591 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.067 0.933 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 -14.020 -12.588 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.184 4.184 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.080 4.080 11 N -0.206 5.206 12 C -0.065 4.065 13 C -0.080 4.080 14 C 0.069 3.931 15 O -0.308 6.308 16 C -0.125 4.125 17 C -0.136 4.136 18 C 0.061 3.939 19 F -0.112 7.112 20 C -0.087 4.087 21 Cl -0.021 7.021 22 C -0.112 4.112 23 H 0.070 0.930 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.269 0.731 30 H 0.192 0.808 31 H 0.198 0.802 32 H 0.085 0.915 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.520 -14.400 -11.864 18.665 hybrid contribution 1.175 1.087 -0.115 1.604 sum 1.695 -13.313 -11.979 17.989 Atomic orbital electron populations 1.70113 1.07602 1.27404 1.51032 1.25815 0.95531 1.02651 0.94438 0.85522 0.79207 0.79469 0.77543 1.18694 1.20561 1.20860 1.21434 0.92998 0.91394 1.50861 0.92167 1.20336 0.94074 0.92382 0.93581 1.23699 0.98146 0.87138 0.99028 1.68530 1.26199 1.16123 1.09702 1.21470 0.94100 0.97908 0.93072 1.19931 0.99325 0.91506 0.97248 1.18374 0.96283 0.84363 0.94033 1.84963 1.57708 1.20285 1.67815 1.21651 0.97374 0.93079 1.00379 1.21298 1.00764 0.95404 0.96089 1.17566 0.98610 0.79844 0.97928 1.91511 1.92377 1.34335 1.92952 1.20784 0.99927 0.94057 0.93884 1.98367 1.78521 1.79745 1.45466 1.23909 0.95090 0.95812 0.96431 0.92969 0.96323 0.94586 0.92291 0.92120 0.89578 0.73120 0.80835 0.80197 0.91519 0.90696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16 2 C 0.01 0.82 5.46 84.66 0.46 1.28 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.53 -28.86 8.77 25.60 0.22 -28.64 16 8 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.02 0.79 3.60 -10.89 -0.04 0.75 16 10 C 0.05 2.29 6.83 86.34 0.59 2.88 16 11 N -0.48 -19.59 6.15 -911.59 -5.61 -25.20 16 12 C 0.06 2.03 4.31 85.56 0.37 2.40 16 13 C -0.08 -2.29 5.46 -19.75 -0.11 -2.40 16 14 C 0.12 2.93 6.67 22.49 0.15 3.08 16 15 O -0.49 -12.56 11.46 -93.00 -1.07 -13.62 16 16 C -0.11 -2.03 9.98 22.37 0.22 -1.81 16 17 C -0.12 -2.16 10.02 22.30 0.22 -1.94 16 18 C 0.08 1.99 7.27 22.39 0.16 2.15 16 19 F -0.13 -3.36 16.83 44.97 0.76 -2.60 16 20 C -0.06 -1.65 6.32 22.35 0.14 -1.51 16 21 Cl -0.05 -1.45 26.95 -2.72 -0.07 -1.52 16 22 C 0.02 0.67 7.50 86.41 0.65 1.32 16 23 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 24 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.06 2.74 7.05 -2.39 -0.02 2.73 16 27 H 0.06 1.90 6.77 -2.39 -0.02 1.88 16 28 H 0.09 2.64 6.83 -2.39 -0.02 2.62 16 29 H 0.41 6.06 9.06 -74.06 -0.67 5.39 16 30 H 0.17 2.24 8.06 -2.91 -0.02 2.21 16 31 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 32 H 0.07 2.62 7.88 -2.38 -0.02 2.60 16 33 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -66.14 301.98 -0.15 -66.29 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.48 Total: 8.27 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: 3.05 Total: -22.43 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -5.32 Total: -79.47 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -1.07 Total: -13.62 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.76 Total: -2.60 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -66.14 -0.15 -66.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237122112.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.137 kcal (2) G-P(sol) polarization free energy of solvation -66.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds