Wall clock time and date at job start Tue Mar 31 2020 06:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86803 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46646 * 240.00090 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00057 * 3 2 1 7 7 C 1.40037 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 179.97438 * 7 2 1 9 9 C 1.41435 * 119.99820 * 0.27907 * 7 2 1 10 10 C 1.40393 * 119.75848 * 179.45033 * 9 7 2 11 11 C 1.39758 * 118.77870 * 179.71728 * 10 9 7 12 12 C 1.47358 * 120.85989 * 180.25938 * 11 10 9 13 13 C 1.34282 * 119.99689 * 180.29474 * 12 11 10 14 14 C 1.47362 * 120.00217 * 179.97438 * 13 12 11 15 15 C 1.39758 * 120.14746 * 359.71916 * 14 13 12 16 16 C 1.37883 * 119.85394 * 179.77173 * 15 14 13 17 17 C 1.38514 * 120.14632 * 0.51016 * 16 15 14 18 18 Cl 1.73600 * 119.85168 * 179.76525 * 17 16 15 19 19 C 1.38510 * 120.29636 * 359.74296 * 17 16 15 20 20 C 1.37883 * 120.15199 * 0.02562 * 19 17 16 21 21 C 1.40422 * 118.27267 * 0.54315 * 11 10 9 22 22 C 1.38367 * 119.38682 * 359.73466 * 21 11 10 23 23 N 1.31535 * 121.19313 * 359.97438 * 22 21 11 24 24 H 0.96991 * 119.99866 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.61239 * 359.97215 * 10 9 7 26 26 H 1.08000 * 120.00287 * 0.28942 * 12 11 10 27 27 H 1.08000 * 120.00024 * 359.97438 * 13 12 11 28 28 H 1.08004 * 120.07509 * 0.02562 * 15 14 13 29 29 H 1.08000 * 119.93286 * 180.23025 * 16 15 14 30 30 H 1.08005 * 119.92470 * 179.97438 * 19 17 16 31 31 H 1.08004 * 120.07704 * 180.02562 * 20 19 17 32 32 H 1.08001 * 120.30843 * 179.71593 * 21 11 10 33 33 H 1.07994 * 119.40397 * 180.02562 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0951 1.6964 -1.2125 5 1 1.2764 2.7465 -0.0006 6 1 3.0952 1.6965 1.2124 7 6 2.0076 -1.2127 0.0005 8 1 3.0877 -1.2127 0.0001 9 6 1.3004 -2.4376 -0.0049 10 6 2.0075 -3.6504 -0.0160 11 6 1.2881 -4.8486 -0.0151 12 6 1.9836 -6.1478 -0.0208 13 6 1.2751 -7.2885 -0.0259 14 6 1.9705 -8.5877 -0.0321 15 6 3.3672 -8.6363 -0.0387 16 6 4.0116 -9.8553 -0.0398 17 6 3.2778 -11.0300 -0.0450 18 17 4.0970 -12.5606 -0.0524 19 6 1.8933 -10.9891 -0.0438 20 6 1.2363 -9.7769 -0.0379 21 6 -0.1145 -4.7824 -0.0149 22 6 -0.7358 -3.5460 -0.0099 23 7 -0.0363 -2.4321 -0.0049 24 1 -0.4849 0.8400 -0.0004 25 1 3.0874 -3.6574 -0.0209 26 1 3.0630 -6.1825 -0.0210 27 1 0.1957 -7.2538 -0.0254 28 1 3.9406 -7.7210 -0.0388 29 1 5.0909 -9.8943 -0.0411 30 1 1.3271 -11.9088 -0.0483 31 1 0.1567 -9.7464 -0.0366 32 1 -0.7030 -5.6880 -0.0188 33 1 -1.8145 -3.4947 -0.0092 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241586607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:53 Heat of formation + Delta-G solvation = 57.206383 kcal Electronic energy + Delta-G solvation = -17758.341942 eV Core-core repulsion = 14774.477141 eV Total energy + Delta-G solvation = -2983.864800 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 285.062 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.39954 -38.23392 -36.67398 -34.67333 -33.39438 -31.26025 -31.10735 -30.08753 -27.93685 -25.84215 -23.72083 -22.86095 -21.59019 -21.21628 -19.16922 -17.42426 -17.10079 -15.84339 -15.59100 -15.08118 -14.68614 -14.41772 -14.04520 -13.67211 -13.63436 -13.54349 -12.72589 -12.39516 -12.37805 -11.91879 -11.87616 -11.58273 -11.46945 -11.25888 -11.00845 -10.92603 -10.72965 -10.38049 -10.30940 -9.91272 -9.39659 -9.19757 -8.75063 -7.74266 -7.64783 -7.33398 -6.46261 -4.59666 0.63874 1.19266 1.99255 2.08098 2.70825 3.04996 3.06894 3.12381 3.38145 3.87073 3.89938 4.61875 4.71523 4.72822 4.81886 5.17075 5.21885 5.35232 5.57131 5.75143 5.84166 5.85897 5.98365 6.07522 6.14338 6.21057 6.38633 6.56716 6.64090 6.70901 6.86248 6.91944 7.09605 7.26052 7.43777 7.63753 7.92096 8.14962 8.58217 8.83438 10.03851 10.25700 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.042242 B = 0.002602 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.680639 B =10758.903695 C =11411.736447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.431 4.431 8 H 0.084 0.916 9 C 0.251 3.749 10 C -0.247 4.247 11 C -0.021 4.021 12 C -0.053 4.053 13 C -0.155 4.155 14 C -0.024 4.024 15 C -0.113 4.113 16 C -0.104 4.104 17 C -0.049 4.049 18 Cl -0.081 7.081 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.301 4.301 22 C 0.122 3.878 23 N -0.481 5.481 24 H 0.274 0.726 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.135 0.865 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.098 0.902 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 -15.788 -0.078 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.157 4.157 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.462 4.462 8 H 0.102 0.898 9 C 0.127 3.873 10 C -0.270 4.270 11 C -0.027 4.027 12 C -0.070 4.070 13 C -0.174 4.174 14 C -0.024 4.024 15 C -0.131 4.131 16 C -0.123 4.123 17 C -0.076 4.076 18 Cl -0.053 7.053 19 C -0.125 4.125 20 C -0.126 4.126 21 C -0.324 4.324 22 C -0.043 4.043 23 N -0.194 5.194 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.144 0.856 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.116 0.884 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.701 -14.936 -0.076 15.388 hybrid contribution 0.873 -0.318 -0.007 0.929 sum 4.574 -15.254 -0.083 15.926 Atomic orbital electron populations 1.70118 1.07202 1.27983 1.28316 1.26078 0.94931 1.01122 0.93605 0.86377 0.80088 0.80383 0.79930 1.18899 1.20170 1.18887 1.19604 0.94241 0.89394 1.43001 0.89819 1.18555 0.88383 0.91762 0.88625 1.22000 0.98501 0.92730 1.13766 1.18797 0.93347 0.91512 0.99086 1.22317 0.98681 0.92046 0.93997 1.21912 0.99738 0.89967 1.05772 1.19257 0.92927 0.93709 0.96551 1.21381 0.93995 0.97553 1.00214 1.20949 1.00223 0.90733 1.00389 1.20951 0.92778 0.86476 1.07390 1.98354 1.79370 1.30458 1.97084 1.20938 0.92138 0.98801 1.00644 1.21264 1.00175 0.90861 1.00258 1.21442 0.93512 0.97957 1.19505 1.22452 0.98866 0.88713 0.94237 1.68735 1.07214 1.26912 1.16497 0.91474 0.87999 0.86916 0.85589 0.84724 0.85078 0.85126 0.84897 0.88406 0.86285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.80 11.46 55.55 0.64 -18.17 16 2 C 0.07 1.71 5.50 -17.34 -0.10 1.61 16 3 Si 0.91 18.23 29.56 -169.99 -5.02 13.20 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.43 -11.30 9.14 -37.69 -0.34 -11.64 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 C 0.25 6.73 6.55 -85.04 -0.56 6.17 16 10 C -0.25 -5.84 9.62 -38.20 -0.37 -6.21 16 11 C -0.02 -0.46 5.90 -104.80 -0.62 -1.07 16 12 C -0.05 -0.89 9.34 -37.27 -0.35 -1.24 16 13 C -0.16 -2.31 9.32 -37.27 -0.35 -2.66 16 14 C -0.02 -0.32 5.87 -105.05 -0.62 -0.93 16 15 C -0.11 -1.37 9.41 -39.14 -0.37 -1.74 16 16 C -0.10 -1.15 9.81 -39.61 -0.39 -1.54 16 17 C -0.05 -0.55 6.33 -39.38 -0.25 -0.80 16 18 Cl -0.08 -0.82 28.95 -51.86 -1.50 -2.32 16 19 C -0.11 -1.13 9.81 -39.61 -0.39 -1.52 16 20 C -0.11 -1.22 9.79 -39.14 -0.38 -1.60 16 21 C -0.30 -6.46 9.49 -38.71 -0.37 -6.82 16 22 C 0.12 2.89 11.16 -17.63 -0.20 2.69 16 23 N -0.48 -13.05 7.84 -11.24 -0.09 -13.13 16 24 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 25 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 26 H 0.11 1.68 6.06 -52.49 -0.32 1.36 16 27 H 0.13 1.84 6.14 -52.49 -0.32 1.52 16 28 H 0.14 1.49 6.17 -52.48 -0.32 1.17 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.10 1.81 6.28 -52.49 -0.33 1.48 16 33 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 307.24 15.07 4.63 4.63 Total: -1.00 -28.32 307.24 -9.94 -38.25 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -2.95 Total: 4.83 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -5.64 Total: -27.29 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.55 Total: -31.30 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.02 Total: 13.20 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.32 -9.94 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241586607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.460 kcal (2) G-P(sol) polarization free energy of solvation -28.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds