Wall clock time and date at job start Tue Mar 31 2020 06:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48508 * 109.46744 * 270.00013 * 3 2 1 5 5 H 1.48501 * 109.47447 * 30.00012 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00353 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27728 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38244 * 120.00387 * 259.71871 * 15 14 13 17 17 C 1.38222 * 120.04652 * 179.77175 * 16 15 14 18 18 C 1.38259 * 120.06177 * 0.51285 * 17 16 15 19 19 C 1.38279 * 120.01182 * 359.74060 * 18 17 16 20 20 Cl 1.73594 * 120.02338 * 179.97438 * 19 18 17 21 21 C 1.38397 * 120.01021 * 80.00021 * 15 14 13 22 22 F 1.35104 * 120.02748 * 359.97438 * 21 15 14 23 23 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 25 25 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 26 26 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 27 27 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 28 28 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 29 29 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 30 30 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 31 31 H 1.08003 * 119.97454 * 0.02562 * 16 15 14 32 32 H 1.07994 * 119.96506 * 180.25276 * 17 16 15 33 33 H 1.07997 * 119.99229 * 179.77054 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4334 -7.4031 -0.0075 15 6 2.4128 -8.5484 -0.0124 16 6 2.7005 -9.2069 -1.1934 17 6 3.6022 -10.2545 -1.1997 18 6 4.2099 -10.6524 -0.0233 19 6 3.9200 -9.9989 1.1603 20 17 4.6822 -10.4987 2.6377 21 6 3.0199 -8.9450 1.1663 22 9 2.7354 -8.3054 2.3219 23 1 -0.4849 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8898 26 1 2.8721 -3.6043 0.8894 27 1 2.8721 -3.6043 -0.8905 28 1 3.1359 -6.1343 -0.0004 29 1 0.8061 -7.4652 0.8818 30 1 0.8074 -7.4565 -0.8982 31 1 2.2235 -8.8999 -2.1124 32 1 3.8291 -10.7653 -2.1238 33 1 4.9114 -11.4735 -0.0289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324257554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:08 Heat of formation + Delta-G solvation = -78.516324 kcal Electronic energy + Delta-G solvation = -19044.889082 eV Core-core repulsion = 15624.369679 eV Total energy + Delta-G solvation = -3420.519403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.067 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.25228 -39.86315 -38.91431 -36.99364 -34.85713 -33.43476 -31.79375 -30.90034 -30.73379 -26.97275 -25.15842 -23.27259 -22.32080 -21.39331 -19.72555 -18.12187 -17.15017 -17.05840 -16.50241 -16.16440 -15.55945 -15.41962 -15.02281 -14.94191 -14.39800 -13.77584 -13.69432 -13.39911 -13.29181 -13.00144 -12.44279 -12.17959 -11.95829 -11.83985 -11.80032 -11.29119 -11.14828 -10.91641 -10.58791 -9.94484 -9.68524 -9.56313 -9.15600 -9.12134 -8.94398 -8.85161 -8.30599 -5.94760 -3.99128 0.48748 0.54069 1.58825 2.87984 3.23650 3.34426 3.40401 3.43197 3.62348 3.69493 4.09370 4.32663 4.48975 4.54782 4.65123 4.92105 5.23822 5.36033 5.40161 5.48511 5.53007 5.70269 5.78213 5.86400 6.20053 6.23590 6.25712 6.61405 6.89968 7.75633 7.83370 7.87618 8.08523 8.39846 8.74914 9.09371 9.64361 11.16221 Molecular weight = 285.07amu Principal moments of inertia in cm(-1) A = 0.029309 B = 0.002946 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.112683 B = 9502.603117 C = 9850.573397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.533 6.533 13 N -0.741 5.741 14 C 0.161 3.839 15 C -0.125 4.125 16 C -0.068 4.068 17 C -0.119 4.119 18 C -0.080 4.080 19 C -0.078 4.078 20 Cl -0.049 7.049 21 C 0.126 3.874 22 F -0.118 7.118 23 H 0.261 0.739 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.398 0.602 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -25.276 -1.306 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.408 6.408 13 N -0.395 5.395 14 C 0.038 3.962 15 C -0.127 4.127 16 C -0.087 4.087 17 C -0.138 4.138 18 C -0.098 4.098 19 C -0.106 4.106 20 Cl -0.020 7.020 21 C 0.106 3.894 22 F -0.096 7.096 23 H 0.070 0.930 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.232 0.768 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.306 -25.149 -1.108 26.838 hybrid contribution 0.997 0.850 0.392 1.368 sum 10.303 -24.298 -0.715 26.402 Atomic orbital electron populations 1.70000 1.06050 1.26578 1.50228 1.25027 0.94832 0.99233 0.95318 0.86586 0.79785 0.83501 0.78045 1.20682 1.21228 1.19878 1.21223 0.92940 0.91013 1.51348 0.92599 1.18905 0.93174 0.89345 0.98653 1.21873 1.00745 0.91715 1.02574 1.21608 0.88662 0.85453 0.74236 1.90676 1.14422 1.87516 1.48137 1.46242 1.10061 1.04874 1.78371 1.20023 0.92083 0.80325 1.03806 1.20070 1.00613 1.00025 0.91962 1.21194 0.96044 0.94114 0.97298 1.21210 0.96920 0.97504 0.98147 1.21041 0.99430 0.99253 0.90117 1.21027 1.00413 0.99036 0.90123 1.98401 1.80038 1.90345 1.33215 1.17329 0.96963 0.92509 0.82638 1.91593 1.91803 1.80014 1.46174 0.92954 0.95792 0.95785 0.90156 0.90182 0.76841 0.90361 0.89965 0.83883 0.84061 0.83882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.60 13.29 55.43 0.74 -26.86 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 10 C -0.13 -2.64 5.64 -27.89 -0.16 -2.80 16 11 C 0.51 9.87 7.83 -10.98 -0.09 9.79 16 12 O -0.53 -12.55 15.98 5.55 0.09 -12.46 16 13 N -0.74 -10.50 5.55 -61.47 -0.34 -10.85 16 14 C 0.16 1.99 5.52 -5.19 -0.03 1.96 16 15 C -0.13 -1.22 5.25 -104.56 -0.55 -1.77 16 16 C -0.07 -0.49 9.67 -39.58 -0.38 -0.87 16 17 C -0.12 -0.69 10.04 -39.58 -0.40 -1.08 16 18 C -0.08 -0.53 9.83 -39.56 -0.39 -0.92 16 19 C -0.08 -0.71 6.33 -39.44 -0.25 -0.96 16 20 Cl -0.05 -0.46 28.62 -51.86 -1.48 -1.94 16 21 C 0.13 1.35 7.22 -39.39 -0.28 1.06 16 22 F -0.12 -1.51 16.24 2.25 0.04 -1.48 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 26 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.40 4.67 8.46 -40.82 -0.35 4.32 16 29 H 0.08 1.08 7.95 -51.93 -0.41 0.67 16 30 H 0.08 0.98 8.00 -51.93 -0.42 0.57 16 31 H 0.14 0.80 8.03 -52.48 -0.42 0.37 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 313.78 15.07 4.73 4.73 Total: -1.00 -34.33 313.78 -7.98 -42.31 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.67 Total: -1.73 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.05 Total: -8.49 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.40 Total: -37.71 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.48 Total: -1.94 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.33 -7.98 -42.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324257554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.204 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds