Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35483 * 117.00289 * 2 1 4 4 C 1.39160 * 119.50216 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.44052 * 179.97438 * 4 3 2 6 6 C 1.40316 * 118.48293 * 0.02562 * 5 4 3 7 7 C 1.47389 * 120.50895 * 179.97438 * 6 5 4 8 8 O 1.21515 * 120.00016 * 179.97438 * 7 6 5 9 9 O 1.34754 * 120.00522 * 359.97438 * 7 6 5 10 10 C 1.45195 * 117.00400 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47059 * 329.99728 * 10 9 7 12 12 C 1.53000 * 109.47165 * 90.00053 * 10 9 7 13 13 C 1.50705 * 109.47168 * 209.99993 * 10 9 7 14 14 H 1.08000 * 120.00088 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99983 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99923 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99864 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.46777 * 90.00149 * 17 15 13 19 19 H 1.48497 * 109.47201 * 210.00074 * 17 15 13 20 20 H 1.48499 * 109.47384 * 330.00434 * 17 15 13 21 21 C 1.39792 * 118.98001 * 359.97438 * 6 5 4 22 22 Cl 1.73599 * 119.77711 * 180.02562 * 21 6 5 23 23 N 1.31828 * 120.44928 * 0.02562 * 21 6 5 24 24 H 1.09003 * 109.46542 * 299.99651 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99249 * 1 2 3 26 26 H 1.08989 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.28049 * 359.96335 * 4 3 2 28 28 H 1.07996 * 120.76079 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46959 * 60.00047 * 12 10 9 30 30 H 1.09005 * 109.46797 * 179.97438 * 12 10 9 31 31 H 1.08997 * 109.47182 * 299.99652 * 12 10 9 32 32 H 0.97000 * 120.00011 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2071 0.0000 4 6 3.4344 1.2678 -0.0005 5 6 4.0549 2.4886 -0.0011 6 6 3.2586 3.6439 -0.0005 7 6 3.8795 4.9806 -0.0005 8 8 3.1811 5.9750 -0.0004 9 8 5.2217 5.1002 -0.0005 10 6 5.7636 6.4472 0.0001 11 1 5.0735 7.1167 -0.5134 12 6 5.9540 6.9197 1.4428 13 6 7.0927 6.4544 -0.7103 14 1 7.4901 5.5382 -1.1216 15 6 7.8007 7.6307 -0.8362 16 7 7.3161 8.7466 -0.3368 17 14 9.4484 7.6394 -1.7163 18 1 9.2358 7.9027 -3.1623 19 1 10.3112 8.7025 -1.1412 20 1 10.1080 6.3200 -1.5451 21 6 1.8673 3.5076 0.0000 22 17 0.8624 4.9231 0.0001 23 7 1.3133 2.3114 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 4.0192 0.3598 -0.0004 28 1 5.1324 2.5605 -0.0019 29 1 6.6441 6.2502 1.9563 30 1 6.3613 7.9308 1.4432 31 1 4.9928 6.9146 1.9567 32 1 7.8144 9.5741 -0.4250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343978115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = -86.192110 kcal Electronic energy + Delta-G solvation = -19802.182822 eV Core-core repulsion = 16368.957782 eV Total energy + Delta-G solvation = -3433.225040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00278 -39.42145 -38.06086 -36.50399 -35.64349 -33.38259 -32.85601 -31.05911 -29.48982 -27.65549 -25.35122 -24.64257 -23.46965 -21.88971 -19.96435 -18.77015 -17.84918 -17.24357 -16.42670 -16.34980 -15.75845 -15.22571 -15.11086 -14.69735 -14.55571 -13.90788 -13.67024 -13.46207 -12.78884 -12.23712 -12.19168 -12.04124 -11.83867 -11.34915 -11.22317 -11.06271 -11.03669 -10.84098 -10.37214 -10.28712 -10.27092 -10.09289 -9.57655 -9.39734 -8.92520 -8.70502 -8.50254 -6.19962 -4.27089 0.46842 0.90934 1.71802 2.73496 2.90837 3.23783 3.28505 3.31911 3.47582 3.69562 4.18502 4.31315 4.65561 4.76833 4.94604 5.01157 5.04444 5.13348 5.24361 5.39056 5.80897 5.86676 6.02748 6.62290 6.78096 6.88198 6.89828 7.11152 7.29992 7.57098 7.70819 7.90122 8.11279 8.57132 8.84233 9.38329 10.87472 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.004166 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.190710 B = 6719.496327 C = 7428.269568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.299 6.299 3 C 0.358 3.642 4 C -0.199 4.199 5 C 0.024 3.976 6 C -0.187 4.187 7 C 0.499 3.501 8 O -0.495 6.495 9 O -0.351 6.351 10 C 0.218 3.782 11 H 0.049 0.951 12 C -0.155 4.155 13 C -0.522 4.522 14 H 0.069 0.931 15 C 0.063 3.937 16 N -0.888 5.888 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.262 3.738 22 Cl 0.016 6.984 23 N -0.545 5.545 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.156 0.844 28 H 0.170 0.830 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.017 0.983 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 -15.375 1.367 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.205 6.205 3 C 0.178 3.822 4 C -0.219 4.219 5 C -0.001 4.001 6 C -0.192 4.192 7 C 0.341 3.659 8 O -0.385 6.385 9 O -0.268 6.268 10 C 0.165 3.835 11 H 0.067 0.933 12 C -0.213 4.213 13 C -0.560 4.560 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.099 3.901 22 Cl 0.045 6.955 23 N -0.272 5.272 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.117 0.883 27 H 0.173 0.827 28 H 0.187 0.813 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.036 0.964 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.443 -15.067 1.391 18.971 hybrid contribution 1.209 0.475 -0.396 1.358 sum -10.234 -14.593 0.996 17.851 Atomic orbital electron populations 1.22961 0.76652 1.03266 1.03006 1.86235 1.23449 1.23894 1.86949 1.19895 0.89322 0.83789 0.89157 1.20888 0.91485 1.00183 1.09357 1.21604 1.02000 0.89273 0.87210 1.19905 0.92038 0.94457 1.12815 1.20356 0.83238 0.87828 0.74465 1.90869 1.63539 1.38840 1.45242 1.86514 1.19152 1.39172 1.81951 1.20682 0.93762 0.74197 0.94814 0.93306 1.22168 0.98216 1.04394 0.96517 1.21010 1.02842 0.95548 1.36567 0.91274 1.24880 0.98568 0.94937 0.95550 1.69897 1.38755 0.99292 1.44644 0.86275 0.82351 0.77971 0.79540 1.20401 1.20963 1.19580 1.21414 0.87979 0.88149 0.92599 1.98473 1.68917 1.32809 1.95277 1.66739 1.40697 0.97485 1.22254 0.91884 0.91878 0.88284 0.82657 0.81269 0.94424 0.88206 0.96386 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.34 16 2 O -0.30 -3.21 10.46 -18.14 -0.19 -3.40 16 3 C 0.36 4.49 7.49 -16.95 -0.13 4.36 16 4 C -0.20 -2.24 9.97 -39.71 -0.40 -2.63 16 5 C 0.02 0.32 9.68 -39.27 -0.38 -0.06 16 6 C -0.19 -3.14 5.89 -104.81 -0.62 -3.76 16 7 C 0.50 10.46 7.86 34.46 0.27 10.73 16 8 O -0.50 -11.43 13.25 -19.28 -0.26 -11.69 16 9 O -0.35 -8.07 9.18 -40.64 -0.37 -8.44 16 10 C 0.22 5.72 2.56 -27.88 -0.07 5.64 16 11 H 0.05 1.42 7.16 -51.93 -0.37 1.05 16 12 C -0.16 -3.87 9.33 37.16 0.35 -3.52 16 13 C -0.52 -14.30 8.90 -34.44 -0.31 -14.61 16 14 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.93 11.32 55.43 0.63 -24.30 16 17 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.26 4.23 7.32 -16.97 -0.12 4.10 16 22 Cl 0.02 0.27 26.19 -51.86 -1.36 -1.09 16 23 N -0.54 -7.80 9.17 -10.04 -0.09 -7.89 16 24 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 25 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 28 H 0.17 2.04 7.69 -52.49 -0.40 1.64 16 29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 2.67 6.07 -51.93 -0.32 2.35 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 300.82 15.07 4.53 4.53 Total: -1.00 -30.34 300.82 -5.75 -36.09 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: -3.17 Total: -2.72 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.45 Total: 3.20 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.54 Total: -32.19 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.82 Total: -23.53 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.36 Total: -1.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.34 -5.75 -36.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343978115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.106 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds