Wall clock time and date at job start Tue Mar 31 2020 06:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35483 * 117.00289 * 2 1 4 4 C 1.39160 * 119.50216 * 180.02562 * 3 2 1 5 5 C 1.36936 * 119.44052 * 179.97438 * 4 3 2 6 6 C 1.40316 * 118.48293 * 0.02562 * 5 4 3 7 7 C 1.47389 * 120.50895 * 179.97438 * 6 5 4 8 8 O 1.21515 * 120.00016 * 179.97438 * 7 6 5 9 9 O 1.34754 * 120.00522 * 359.97438 * 7 6 5 10 10 C 1.45195 * 117.00400 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47059 * 329.99728 * 10 9 7 12 12 C 1.53000 * 109.47165 * 90.00053 * 10 9 7 13 13 C 1.50705 * 109.47168 * 209.99993 * 10 9 7 14 14 H 1.08000 * 120.00088 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99983 * 179.97438 * 13 10 9 16 16 N 1.31512 * 119.99923 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99864 * 179.97438 * 15 13 10 18 18 H 1.48510 * 109.46777 * 90.00149 * 17 15 13 19 19 H 1.48497 * 109.47201 * 210.00074 * 17 15 13 20 20 H 1.48499 * 109.47384 * 330.00434 * 17 15 13 21 21 C 1.39792 * 118.98001 * 359.97438 * 6 5 4 22 22 Cl 1.73599 * 119.77711 * 180.02562 * 21 6 5 23 23 N 1.31828 * 120.44928 * 0.02562 * 21 6 5 24 24 H 1.09003 * 109.46542 * 299.99651 * 1 2 3 25 25 H 1.09002 * 109.47078 * 59.99249 * 1 2 3 26 26 H 1.08989 * 109.47421 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.28049 * 359.96335 * 4 3 2 28 28 H 1.07996 * 120.76079 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.46959 * 60.00047 * 12 10 9 30 30 H 1.09005 * 109.46797 * 179.97438 * 12 10 9 31 31 H 1.08997 * 109.47182 * 299.99652 * 12 10 9 32 32 H 0.97000 * 120.00011 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2071 0.0000 4 6 3.4344 1.2678 -0.0005 5 6 4.0549 2.4886 -0.0011 6 6 3.2586 3.6439 -0.0005 7 6 3.8795 4.9806 -0.0005 8 8 3.1811 5.9750 -0.0004 9 8 5.2217 5.1002 -0.0005 10 6 5.7636 6.4472 0.0001 11 1 5.0735 7.1167 -0.5134 12 6 5.9540 6.9197 1.4428 13 6 7.0927 6.4544 -0.7103 14 1 7.4901 5.5382 -1.1216 15 6 7.8007 7.6307 -0.8362 16 7 7.3161 8.7466 -0.3368 17 14 9.4484 7.6394 -1.7163 18 1 9.2358 7.9027 -3.1623 19 1 10.3112 8.7025 -1.1412 20 1 10.1080 6.3200 -1.5451 21 6 1.8673 3.5076 0.0000 22 17 0.8624 4.9231 0.0001 23 7 1.3133 2.3114 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0275 -0.0005 27 1 4.0192 0.3598 -0.0004 28 1 5.1324 2.5605 -0.0019 29 1 6.6441 6.2502 1.9563 30 1 6.3613 7.9308 1.4432 31 1 4.9928 6.9146 1.9567 32 1 7.8144 9.5741 -0.4250 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343978115.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:26 Heat of formation + Delta-G solvation = -105.948142 kcal Electronic energy + Delta-G solvation = -19803.039508 eV Core-core repulsion = 16368.957782 eV Total energy + Delta-G solvation = -3434.081725 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.12495 -40.98533 -39.14556 -37.74241 -37.42321 -35.32096 -34.05722 -32.28505 -31.39781 -28.45548 -27.42828 -25.96959 -24.49381 -23.55592 -21.72396 -19.73378 -19.27936 -18.80632 -18.00339 -17.58633 -17.35708 -16.73635 -16.48965 -16.26031 -15.50408 -15.14515 -15.06716 -14.60952 -14.38872 -14.07190 -13.71509 -13.19920 -13.06094 -12.99773 -12.85647 -12.81868 -12.52947 -12.34723 -12.10374 -12.04959 -11.57107 -11.44382 -11.19885 -10.99986 -10.87051 -10.56857 -9.80060 -8.25687 -6.42192 -0.72705 -0.14977 0.51812 1.44624 1.46738 1.49833 1.57947 1.75611 1.95776 2.41756 2.43238 3.05663 3.12446 3.50466 3.62320 3.92686 4.07111 4.40276 4.40520 4.52073 4.60922 4.76190 4.82433 4.83637 4.87302 5.05838 5.16967 5.51105 5.65236 5.83739 5.92532 6.07697 6.23312 6.62262 6.92380 7.29081 8.82089 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.027876 B = 0.004166 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.190710 B = 6719.496327 C = 7428.269568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.294 6.294 3 C 0.361 3.639 4 C -0.176 4.176 5 C 0.029 3.971 6 C -0.210 4.210 7 C 0.495 3.505 8 O -0.525 6.525 9 O -0.351 6.351 10 C 0.220 3.780 11 H 0.010 0.990 12 C -0.143 4.143 13 C -0.545 4.545 14 H 0.072 0.928 15 C 0.016 3.984 16 N -0.918 5.918 17 Si 0.982 3.018 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.259 1.259 21 C 0.257 3.743 22 Cl 0.000 7.000 23 N -0.550 5.550 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.134 0.866 27 H 0.197 0.803 28 H 0.183 0.817 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.022 0.978 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.614 -18.170 1.102 20.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.199 6.199 3 C 0.181 3.819 4 C -0.196 4.196 5 C 0.005 3.995 6 C -0.216 4.216 7 C 0.340 3.660 8 O -0.416 6.416 9 O -0.268 6.268 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.200 4.200 13 C -0.583 4.583 14 H 0.090 0.910 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.806 3.194 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.183 1.183 21 C 0.094 3.906 22 Cl 0.029 6.971 23 N -0.278 5.278 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.214 0.786 28 H 0.200 0.800 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.648 -17.901 1.133 20.859 hybrid contribution 0.801 1.176 -0.305 1.456 sum -9.847 -16.725 0.828 19.426 Atomic orbital electron populations 1.23246 0.75065 1.05517 1.02685 1.86271 1.24955 1.22496 1.86182 1.20280 0.90076 0.83835 0.87712 1.21247 0.91117 1.00692 1.06590 1.21769 1.02418 0.88782 0.86562 1.19702 0.92455 0.93131 1.16263 1.21058 0.82242 0.89427 0.73267 1.90848 1.63688 1.40396 1.46674 1.86486 1.20677 1.37065 1.82564 1.20377 0.92847 0.75143 0.94901 0.97238 1.21991 0.98560 1.03391 0.96105 1.21306 1.03449 0.96095 1.37425 0.90961 1.25822 1.02295 0.94297 0.95970 1.70025 1.40274 0.99929 1.45369 0.85187 0.77567 0.78522 0.78167 1.19959 1.20336 1.18321 1.21335 0.87545 0.88462 0.93289 1.98462 1.69254 1.33982 1.95416 1.66735 1.40992 0.97294 1.22758 0.92182 0.92237 0.84819 0.78602 0.79965 0.93329 0.90137 0.95855 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.37 113.37 1.18 1.56 16 2 O -0.29 -5.28 10.46 -87.83 -0.92 -6.20 16 3 C 0.36 8.01 7.49 84.83 0.64 8.65 16 4 C -0.18 -3.34 9.97 22.19 0.22 -3.12 16 5 C 0.03 0.71 9.68 22.47 0.22 0.93 16 6 C -0.21 -6.98 5.89 -19.99 -0.12 -7.10 16 7 C 0.50 21.28 7.86 70.23 0.55 21.84 16 8 O -0.52 -25.29 13.25 19.79 0.26 -25.03 16 9 O -0.35 -16.41 9.18 -56.65 -0.52 -16.93 16 10 C 0.22 11.92 2.56 29.85 0.08 11.99 16 11 H 0.01 0.60 7.16 -2.39 -0.02 0.58 16 12 C -0.14 -7.28 9.33 71.98 0.67 -6.61 16 13 C -0.55 -30.18 8.90 25.60 0.23 -29.95 16 14 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 15 C 0.02 0.86 5.30 84.66 0.45 1.30 16 16 N -0.92 -52.34 11.32 21.45 0.24 -52.09 16 17 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 19 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 21 C 0.26 8.24 7.32 85.07 0.62 8.86 16 22 Cl 0.00 -0.01 26.19 -2.72 -0.07 -0.08 16 23 N -0.55 -14.97 9.17 -298.57 -2.74 -17.71 16 24 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 25 H 0.06 0.85 8.10 -2.39 -0.02 0.84 16 26 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.18 3.96 7.69 -2.91 -0.02 3.94 16 29 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.08 4.42 6.07 -2.38 -0.01 4.41 16 31 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -66.86 300.82 4.17 -62.69 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.15 Total: 2.90 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 4.73 Total: 8.35 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -2.49 Total: -69.80 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: -1.18 Total: -48.16 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -0.07 Total: -0.08 kcal Total: -66.86 4.17 -62.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343978115.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.261 kcal (2) G-P(sol) polarization free energy of solvation -66.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds