Wall clock time and date at job start Tue Mar 31 2020 05:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47023 * 270.00003 * 3 2 1 5 5 H 1.48498 * 109.47151 * 29.99856 * 3 2 1 6 6 H 1.48497 * 109.47207 * 149.99954 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99432 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47297 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54359 * 68.38028 * 11 10 9 13 13 O 1.42100 * 110.54486 * 291.62540 * 11 10 9 14 14 C 1.76206 * 104.44685 * 180.02562 * 11 10 9 15 15 N 1.31684 * 119.71758 * 263.40764 * 14 11 10 16 16 C 1.31933 * 121.88650 * 179.72506 * 15 14 11 17 17 C 1.38365 * 121.08503 * 0.59472 * 16 15 14 18 18 C 1.38342 * 119.31052 * 359.41944 * 17 16 15 19 19 C 1.39573 * 119.72096 * 83.42969 * 14 11 10 20 20 C 1.47715 * 120.56433 * 359.95452 * 19 14 11 21 21 O 1.21471 * 120.00178 * 311.43257 * 20 19 14 22 22 O 1.34709 * 119.99810 * 131.42466 * 20 19 14 23 23 H 0.97003 * 120.00238 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47446 * 60.00206 * 9 7 2 25 25 H 1.08996 * 109.47547 * 299.99619 * 9 7 2 26 26 H 1.09006 * 109.46837 * 59.99941 * 10 9 7 27 27 H 1.09002 * 109.47151 * 300.00501 * 10 9 7 28 28 H 1.08003 * 119.46031 * 180.31034 * 16 15 14 29 29 H 1.08001 * 120.34124 * 179.69865 * 17 16 15 30 30 H 1.08002 * 120.85773 * 180.30522 * 18 17 16 31 31 H 0.96708 * 117.00388 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6646 -5.4194 1.2385 14 6 2.5961 -6.4670 0.0020 15 7 2.9702 -7.0184 -1.1338 16 6 3.9111 -7.9419 -1.1835 17 6 4.5413 -8.3824 -0.0331 18 6 4.1849 -7.8348 1.1863 19 6 3.1871 -6.8519 1.2064 20 6 2.7679 -6.2330 2.4804 21 8 2.6854 -5.0245 2.5704 22 8 2.4767 -7.0089 3.5424 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 4.1909 -8.3644 -2.1373 29 1 5.3066 -9.1425 -0.0872 30 1 4.6640 -8.1565 2.0992 31 1 2.2066 -6.5585 4.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621428.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:37 Heat of formation + Delta-G solvation = -117.876500 kcal Electronic energy + Delta-G solvation = -20432.654886 eV Core-core repulsion = 17000.099614 eV Total energy + Delta-G solvation = -3432.555271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97967 -39.59914 -36.70138 -36.05727 -35.46742 -33.83762 -33.17562 -32.10541 -31.11106 -25.78117 -25.50905 -24.49055 -22.06421 -21.52574 -19.08356 -18.41040 -17.85433 -17.38902 -17.13592 -16.50761 -15.45952 -15.43288 -15.30647 -15.13854 -14.51131 -14.24546 -14.13587 -13.55833 -13.37841 -12.92258 -12.47987 -11.77457 -11.69152 -11.59327 -11.42892 -11.35018 -11.04640 -10.95972 -10.77707 -10.50798 -10.35377 -10.24208 -9.94035 -9.89501 -9.60837 -9.10751 -8.43972 -6.06462 -4.11263 -0.02178 0.46560 0.62826 2.09859 2.68378 3.08599 3.21437 3.31012 3.36724 3.40220 3.83678 4.23817 4.31720 4.41740 4.43543 4.60442 4.71740 4.90845 5.13871 5.28927 5.29064 5.47097 5.76004 5.81424 5.96925 6.32873 6.60791 7.25013 7.36775 7.43843 7.69521 7.86980 8.22989 8.91400 9.52441 11.04768 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.005176 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.361091 B = 5408.729046 C = 5676.563887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.549 4.549 11 S 2.465 3.535 12 O -0.921 6.921 13 O -0.934 6.934 14 C -0.371 4.371 15 N -0.390 5.390 16 C 0.102 3.898 17 C -0.134 4.134 18 C -0.046 4.046 19 C -0.087 4.087 20 C 0.527 3.473 21 O -0.471 6.471 22 O -0.504 6.504 23 H 0.265 0.735 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.139 0.861 27 H 0.123 0.877 28 H 0.175 0.825 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -17.987 3.400 21.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.684 4.684 11 S 2.643 3.357 12 O -0.918 6.918 13 O -0.930 6.930 14 C -0.587 4.587 15 N -0.099 5.099 16 C -0.058 4.058 17 C -0.154 4.154 18 C -0.072 4.072 19 C -0.091 4.091 20 C 0.367 3.633 21 O -0.358 6.358 22 O -0.316 6.316 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.157 0.843 27 H 0.142 0.858 28 H 0.192 0.808 29 H 0.170 0.830 30 H 0.172 0.828 31 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 9.453 -17.752 2.305 20.244 hybrid contribution 1.653 0.621 1.306 2.196 sum 11.106 -17.131 3.611 20.733 Atomic orbital electron populations 1.69958 1.06090 1.27142 1.49716 1.25050 0.94978 0.99448 0.94963 0.86452 0.79715 0.82814 0.78198 1.20467 1.21033 1.19758 1.20969 0.93131 0.89439 1.51964 0.91916 1.19023 0.92695 0.90017 0.99128 1.30175 1.13481 1.13507 1.11249 1.07287 0.75878 0.77673 0.74908 1.93539 1.69623 1.84907 1.43717 1.93546 1.69697 1.85524 1.44256 1.34365 1.16843 1.15729 0.91794 1.67972 1.10169 1.06465 1.25256 1.23442 0.90650 0.92273 0.99411 1.22414 1.00167 0.99880 0.92923 1.21851 0.94051 0.91608 0.99738 1.19834 0.98894 0.98864 0.91545 1.20326 0.74049 0.85109 0.83809 1.91021 1.46677 1.14565 1.83490 1.84476 1.79709 1.43934 1.23517 0.92559 0.94664 0.94414 0.84284 0.85831 0.80821 0.82960 0.82753 0.71856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.06 1.69 7.74 -52.48 -0.41 1.28 16 9 C 0.03 0.81 4.98 -27.88 -0.14 0.67 16 10 C -0.55 -11.62 5.69 37.16 0.21 -11.41 16 11 S 2.46 50.11 4.55 -107.50 -0.49 49.62 16 12 O -0.92 -20.92 17.68 -57.54 -1.02 -21.94 16 13 O -0.93 -20.33 14.61 -66.57 -0.97 -21.31 16 14 C -0.37 -6.16 6.57 -17.12 -0.11 -6.27 16 15 N -0.39 -5.96 9.97 -12.09 -0.12 -6.08 16 16 C 0.10 1.03 11.17 -17.46 -0.20 0.84 16 17 C -0.13 -1.04 10.10 -39.50 -0.40 -1.44 16 18 C -0.05 -0.44 9.91 -38.85 -0.39 -0.83 16 19 C -0.09 -1.23 5.77 -104.84 -0.61 -1.84 16 20 C 0.53 7.86 6.11 34.60 0.21 8.07 16 21 O -0.47 -8.51 13.50 -26.78 -0.36 -8.87 16 22 O -0.50 -5.63 13.40 -40.52 -0.54 -6.17 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.14 2.81 6.21 -51.92 -0.32 2.49 16 27 H 0.12 2.33 8.14 -51.92 -0.42 1.91 16 28 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 29 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.42 2.92 9.11 45.56 0.42 3.33 16 LS Contribution 292.69 15.07 4.41 4.41 Total: -1.00 -38.13 292.69 -7.19 -45.32 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -1.99 Total: 0.17 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -1.82 Total: -25.57 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.62 Total: -32.21 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -2.89 Total: -58.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 50.11 SS G_CDS: -0.49 Total: 49.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -38.13 -7.19 -45.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621428.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.561 kcal (2) G-P(sol) polarization free energy of solvation -38.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds