Wall clock time and date at job start Tue Mar 31 2020 05:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00025 * 2 1 4 4 H 1.48500 * 109.47023 * 270.00003 * 3 2 1 5 5 H 1.48498 * 109.47151 * 29.99856 * 3 2 1 6 6 H 1.48497 * 109.47207 * 149.99954 * 3 2 1 7 7 C 1.37880 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99432 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47297 * 179.97438 * 9 7 2 11 11 S 1.81398 * 109.47240 * 179.97438 * 10 9 7 12 12 O 1.42098 * 110.54359 * 68.38028 * 11 10 9 13 13 O 1.42100 * 110.54486 * 291.62540 * 11 10 9 14 14 C 1.76206 * 104.44685 * 180.02562 * 11 10 9 15 15 N 1.31684 * 119.71758 * 263.40764 * 14 11 10 16 16 C 1.31933 * 121.88650 * 179.72506 * 15 14 11 17 17 C 1.38365 * 121.08503 * 0.59472 * 16 15 14 18 18 C 1.38342 * 119.31052 * 359.41944 * 17 16 15 19 19 C 1.39573 * 119.72096 * 83.42969 * 14 11 10 20 20 C 1.47715 * 120.56433 * 359.95452 * 19 14 11 21 21 O 1.21471 * 120.00178 * 311.43257 * 20 19 14 22 22 O 1.34709 * 119.99810 * 131.42466 * 20 19 14 23 23 H 0.97003 * 120.00238 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47446 * 60.00206 * 9 7 2 25 25 H 1.08996 * 109.47547 * 299.99619 * 9 7 2 26 26 H 1.09006 * 109.46837 * 59.99941 * 10 9 7 27 27 H 1.09002 * 109.47151 * 300.00501 * 10 9 7 28 28 H 1.08003 * 119.46031 * 180.31034 * 16 15 14 29 29 H 1.08001 * 120.34124 * 179.69865 * 17 16 15 30 30 H 1.08002 * 120.85773 * 180.30522 * 18 17 16 31 31 H 0.96708 * 117.00388 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6622 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2354 13 8 0.6646 -5.4194 1.2385 14 6 2.5961 -6.4670 0.0020 15 7 2.9702 -7.0184 -1.1338 16 6 3.9111 -7.9419 -1.1835 17 6 4.5413 -8.3824 -0.0331 18 6 4.1849 -7.8348 1.1863 19 6 3.1871 -6.8519 1.2064 20 6 2.7679 -6.2330 2.4804 21 8 2.6854 -5.0245 2.5704 22 8 2.4767 -7.0089 3.5424 23 1 -0.4851 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6240 -2.5568 0.8903 26 1 2.8719 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 4.1909 -8.3644 -2.1373 29 1 5.3066 -9.1425 -0.0872 30 1 4.6640 -8.1565 2.0992 31 1 2.2066 -6.5585 4.3544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610621428.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:36 Heat of formation + Delta-G solvation = -149.412829 kcal Electronic energy + Delta-G solvation = -20434.022404 eV Core-core repulsion = 17000.099614 eV Total energy + Delta-G solvation = -3433.922789 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.055 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.97491 -40.61336 -38.26517 -37.20489 -37.13255 -35.92882 -34.07525 -33.18419 -33.01448 -27.68075 -26.65322 -25.48710 -23.52141 -23.03262 -20.43336 -19.52390 -19.26974 -18.60007 -18.34141 -18.14175 -17.10339 -16.74028 -16.59183 -16.41536 -16.23566 -15.29744 -15.23324 -15.09611 -14.47686 -14.35505 -13.85420 -13.75735 -13.30805 -13.22425 -12.95514 -12.84673 -12.72409 -12.61246 -12.32247 -12.15020 -11.93021 -11.73669 -11.35347 -11.19209 -10.83495 -10.71588 -10.64412 -8.25979 -6.40356 -1.18671 -0.87043 -0.20700 1.02041 1.40568 1.43725 1.54890 1.71105 1.74578 2.19097 2.39023 2.73646 2.76738 3.07143 3.48864 3.56210 3.70747 3.74694 3.95383 4.04396 4.11649 4.31808 4.62333 4.67814 4.79168 5.19582 5.24141 5.29708 5.45972 5.67356 6.04120 6.35731 6.71303 6.74012 7.29001 8.86912 Molecular weight = 285.05amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.005176 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.361091 B = 5408.729046 C = 5676.563887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.978 3.022 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.026 3.974 10 C -0.550 4.550 11 S 2.479 3.521 12 O -0.960 6.960 13 O -0.961 6.961 14 C -0.395 4.395 15 N -0.428 5.428 16 C 0.096 3.904 17 C -0.095 4.095 18 C -0.040 4.040 19 C -0.101 4.101 20 C 0.526 3.474 21 O -0.516 6.516 22 O -0.490 6.490 23 H 0.269 0.731 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.147 0.853 27 H 0.142 0.858 28 H 0.215 0.785 29 H 0.214 0.786 30 H 0.196 0.804 31 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.468 -20.268 3.561 25.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.801 3.199 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.183 1.183 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.012 4.012 10 C -0.684 4.684 11 S 2.664 3.336 12 O -0.957 6.957 13 O -0.958 6.958 14 C -0.616 4.616 15 N -0.138 5.138 16 C -0.064 4.064 17 C -0.114 4.114 18 C -0.066 4.066 19 C -0.106 4.106 20 C 0.367 3.633 21 O -0.406 6.406 22 O -0.304 6.304 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.027 0.973 26 H 0.165 0.835 27 H 0.160 0.840 28 H 0.232 0.768 29 H 0.231 0.769 30 H 0.213 0.787 31 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges 13.081 -19.983 2.493 24.013 hybrid contribution 0.632 1.040 1.267 1.756 sum 13.713 -18.943 3.760 23.686 Atomic orbital electron populations 1.70107 1.08092 1.28444 1.50664 1.26139 0.95924 1.03888 0.94153 0.85251 0.78530 0.77298 0.78793 1.19266 1.20519 1.18317 1.21444 0.93933 0.90505 1.51937 0.90745 1.18831 0.93387 0.92515 0.96515 1.30028 1.12533 1.13313 1.12528 1.06020 0.76272 0.77709 0.73646 1.93478 1.71714 1.85528 1.45016 1.93495 1.71412 1.85934 1.44944 1.32874 1.18136 1.16782 0.93858 1.67849 1.12492 1.08610 1.24840 1.24270 0.88997 0.90692 1.02423 1.23111 0.98913 0.98576 0.90775 1.22438 0.92120 0.89606 1.02428 1.19952 1.00345 1.00436 0.89913 1.20677 0.73081 0.84739 0.84773 1.90998 1.48785 1.16488 1.84310 1.84437 1.78937 1.43301 1.23722 0.92253 0.97162 0.97346 0.83498 0.83971 0.76820 0.76931 0.78693 0.69877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.66 13.29 21.45 0.28 -58.37 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.98 44.79 29.54 68.60 2.03 46.82 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.54 -31.74 9.11 25.60 0.23 -31.50 16 8 H 0.07 4.07 7.74 -2.91 -0.02 4.05 16 9 C 0.03 1.50 4.98 29.85 0.15 1.65 16 10 C -0.55 -24.70 5.69 71.98 0.41 -24.29 16 11 S 2.48 106.92 4.55 -56.49 -0.26 106.66 16 12 O -0.96 -46.57 17.68 -127.65 -2.26 -48.83 16 13 O -0.96 -44.66 14.61 -119.02 -1.74 -46.40 16 14 C -0.39 -13.03 6.57 85.04 0.56 -12.48 16 15 N -0.43 -12.46 9.97 -192.18 -1.92 -14.37 16 16 C 0.10 1.52 11.17 84.71 0.95 2.47 16 17 C -0.09 -0.86 10.10 22.32 0.23 -0.63 16 18 C -0.04 -0.57 9.91 22.74 0.23 -0.35 16 19 C -0.10 -2.68 5.77 -20.00 -0.12 -2.80 16 20 C 0.53 15.44 6.11 70.33 0.43 15.87 16 21 O -0.52 -19.25 13.50 27.14 0.37 -18.89 16 22 O -0.49 -10.23 13.40 -56.19 -0.75 -10.98 16 23 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 24 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.15 6.29 6.21 -2.39 -0.01 6.28 16 27 H 0.14 5.64 8.14 -2.39 -0.02 5.62 16 28 H 0.22 1.47 8.06 -2.91 -0.02 1.45 16 29 H 0.21 -0.52 8.06 -2.91 -0.02 -0.55 16 30 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 31 H 0.44 5.62 9.11 -74.05 -0.67 4.95 16 Total: -1.00 -90.28 292.69 -0.21 -90.49 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.51 Total: 5.63 kcal Atomic # 6 Polarization: -55.28 SS G_CDS: 3.52 Total: -51.75 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.63 Total: -72.74 kcal Atomic # 8 Polarization: -120.71 SS G_CDS: -4.38 Total: -125.10 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 106.92 SS G_CDS: -0.26 Total: 106.66 kcal Total: -90.28 -0.21 -90.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621428.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.922 kcal (2) G-P(sol) polarization free energy of solvation -90.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds