Wall clock time and date at job start Tue Mar 31 2020 06:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35915 * 117.00133 * 2 1 4 4 C 1.38590 * 119.98067 * 180.29382 * 3 2 1 5 5 C 1.38955 * 119.98007 * 180.23202 * 4 3 2 6 6 N 1.39525 * 120.03423 * 179.77390 * 5 4 3 7 7 C 1.34777 * 119.99828 * 325.23616 * 6 5 4 8 8 O 1.21748 * 120.00064 * 4.50642 * 7 6 5 9 9 C 1.46137 * 120.00270 * 184.51459 * 7 6 5 10 10 H 1.08006 * 119.99936 * 354.94995 * 9 7 6 11 11 C 1.40121 * 120.00182 * 174.68582 * 9 7 6 12 12 N 1.30631 * 120.00290 * 5.03269 * 11 9 7 13 13 Si 1.86807 * 120.00206 * 185.03850 * 11 9 7 14 14 H 1.48500 * 109.47230 * 94.99319 * 13 11 9 15 15 H 1.48496 * 109.47130 * 214.99703 * 13 11 9 16 16 H 1.48506 * 109.46530 * 334.99551 * 13 11 9 17 17 C 1.39090 * 119.93712 * 359.48916 * 5 4 3 18 18 Cl 1.73596 * 120.02726 * 180.27548 * 17 5 4 19 19 C 1.38646 * 119.94813 * 0.26012 * 17 5 4 20 20 O 1.35919 * 119.98645 * 179.97438 * 19 17 5 21 21 C 1.42904 * 117.00024 * 179.97438 * 20 19 17 22 22 C 1.38749 * 120.02206 * 359.97188 * 19 17 5 23 23 H 1.09000 * 109.47144 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47333 * 299.99923 * 1 2 3 25 25 H 1.08999 * 109.46784 * 60.00070 * 1 2 3 26 26 H 1.07998 * 120.00859 * 359.97438 * 4 3 2 27 27 H 0.97004 * 120.00422 * 145.23695 * 6 5 4 28 28 H 0.96999 * 120.00437 * 180.02562 * 12 11 9 29 29 H 1.09003 * 109.47239 * 59.99854 * 21 20 19 30 30 H 1.08995 * 109.47383 * 180.02562 * 21 20 19 31 31 H 1.09006 * 109.47026 * 300.00477 * 21 20 19 32 32 H 1.07995 * 119.96432 * 180.02562 * 22 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4301 1.2830 -0.0062 5 6 4.0609 2.5211 -0.0013 6 7 5.4542 2.5949 -0.0027 7 6 6.1787 1.6700 0.6577 8 8 5.6225 0.7247 1.1863 9 6 7.6318 1.8018 0.7395 10 1 8.1333 2.5939 0.2031 11 6 8.3740 0.9039 1.5181 12 7 7.7806 -0.1089 2.0914 13 14 10.2122 1.1552 1.7367 14 1 10.4635 1.9030 2.9948 15 1 10.8880 -0.1655 1.8024 16 1 10.7462 1.9279 0.5864 17 6 3.3022 3.6868 -0.0010 18 17 4.0879 5.2348 -0.0021 19 6 1.9177 3.6115 -0.0001 20 8 1.1755 4.7502 0.0008 21 6 -0.2454 4.5983 0.0011 22 6 1.2898 2.3743 -0.0001 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.0180 0.3772 -0.0105 27 1 5.9015 3.3119 -0.4790 28 1 8.2944 -0.7303 2.6307 29 1 -0.5519 4.0483 0.8909 30 1 -0.7159 5.5815 0.0013 31 1 -0.5524 4.0492 -0.8891 32 1 0.2114 2.3167 0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001629756240.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:02 Heat of formation + Delta-G solvation = -113.990952 kcal Electronic energy + Delta-G solvation = -20103.130683 eV Core-core repulsion = 16668.700195 eV Total energy + Delta-G solvation = -3434.430488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 285.060 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.70706 -40.03084 -39.83174 -37.79994 -36.92871 -34.97828 -34.42818 -31.16106 -30.51010 -28.92299 -28.03060 -27.42865 -23.93086 -23.38456 -21.68144 -19.87392 -19.43654 -18.04077 -17.66653 -17.47236 -17.02429 -16.81239 -16.72042 -16.40614 -15.86521 -15.63365 -14.96429 -14.64296 -14.33837 -13.96435 -13.69696 -13.42071 -13.20877 -12.84366 -12.78717 -12.70947 -12.39954 -12.29535 -12.26861 -12.01159 -11.77937 -11.67080 -10.98247 -10.54485 -9.93643 -9.01854 -8.95502 -8.38603 -6.96550 0.16586 0.32795 1.24833 1.40885 1.41368 1.58214 2.00661 2.24739 2.27956 2.35086 2.63663 2.93840 3.52476 3.89096 3.92681 4.07687 4.30207 4.35398 4.39720 4.43502 4.43741 4.67804 4.76483 4.79635 5.04943 5.23428 5.24268 5.30283 5.71177 6.07607 6.11976 6.16046 6.46196 6.76249 7.21557 8.28755 8.54694 Molecular weight = 285.06amu Principal moments of inertia in cm(-1) A = 0.020191 B = 0.005286 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.437280 B = 5295.833320 C = 6549.724445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.333 6.333 3 C 0.190 3.810 4 C -0.222 4.222 5 C 0.248 3.752 6 N -0.682 5.682 7 C 0.529 3.471 8 O -0.597 6.597 9 C -0.561 4.561 10 H 0.093 0.907 11 C 0.032 3.968 12 N -0.810 5.810 13 Si 1.002 2.998 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.247 1.247 17 C -0.167 4.167 18 Cl -0.057 7.057 19 C 0.199 3.801 20 O -0.314 6.314 21 C 0.013 3.987 22 C -0.307 4.307 23 H 0.121 0.879 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.117 0.883 27 H 0.408 0.592 28 H 0.279 0.721 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.072 0.928 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 7.474 -5.102 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.246 6.246 3 C 0.142 3.858 4 C -0.244 4.244 5 C 0.147 3.853 6 N -0.326 5.326 7 C 0.337 3.663 8 O -0.483 6.483 9 C -0.596 4.596 10 H 0.111 0.889 11 C -0.185 4.185 12 N -0.439 5.439 13 Si 0.820 3.180 14 H -0.188 1.188 15 H -0.195 1.195 16 H -0.170 1.170 17 C -0.198 4.198 18 Cl -0.029 7.029 19 C 0.151 3.849 20 O -0.227 6.227 21 C -0.081 4.081 22 C -0.327 4.327 23 H 0.139 0.861 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.135 0.865 27 H 0.245 0.755 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.091 0.909 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.064 6.779 -4.600 17.147 hybrid contribution 0.759 0.188 0.046 0.783 sum -14.305 6.967 -4.554 16.550 Atomic orbital electron populations 1.23482 0.75716 1.05984 1.02833 1.86126 1.24272 1.26355 1.87879 1.18514 0.90704 0.84877 0.91677 1.20302 0.92668 0.97531 1.13927 1.17108 0.84765 0.90920 0.92489 1.43793 1.02437 1.32212 1.54169 1.18785 0.88858 0.80844 0.77801 1.90606 1.72921 1.33671 1.51053 1.21366 0.89636 1.16425 1.32218 0.88862 1.26991 1.06305 0.92593 0.92591 1.70137 1.39757 1.10729 1.23247 0.84940 0.74249 0.78777 0.79984 1.18766 1.19481 1.16984 1.19765 0.90374 0.86159 1.23530 1.98287 1.80476 1.26430 1.97683 1.17958 0.88254 0.86199 0.92508 1.86144 1.21361 1.27455 1.87717 1.23498 0.75809 1.06030 1.02739 1.21215 1.01723 0.89445 1.20358 0.86129 0.91277 0.90584 0.86526 0.75505 0.91080 0.91432 0.85610 0.90938 0.80486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -11.10 10.49 -92.59 -0.97 -12.07 16 3 C 0.19 7.02 6.68 22.48 0.15 7.17 16 4 C -0.22 -10.37 8.63 22.53 0.19 -10.18 16 5 C 0.25 11.25 6.30 38.29 0.24 11.49 16 6 N -0.68 -33.10 5.03 -307.57 -1.55 -34.65 16 7 C 0.53 31.01 7.57 86.29 0.65 31.67 16 8 O -0.60 -39.57 12.44 -4.50 -0.06 -39.63 16 9 C -0.56 -31.52 9.53 24.78 0.24 -31.28 16 10 H 0.09 4.68 7.85 -2.91 -0.02 4.66 16 11 C 0.03 1.75 5.50 85.33 0.47 2.22 16 12 N -0.81 -48.67 11.84 21.85 0.26 -48.41 16 13 Si 1.00 40.22 29.56 68.60 2.03 42.24 16 14 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 15 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 16 H -0.25 -9.18 7.11 99.48 0.71 -8.48 16 17 C -0.17 -6.45 6.35 22.57 0.14 -6.31 16 18 Cl -0.06 -1.99 27.48 -2.72 -0.07 -2.07 16 19 C 0.20 6.41 6.67 22.49 0.15 6.56 16 20 O -0.31 -8.30 9.95 -92.64 -0.92 -9.22 16 21 C 0.01 0.19 9.81 113.37 1.11 1.30 16 22 C -0.31 -8.97 8.03 22.51 0.18 -8.79 16 23 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 25 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 26 H 0.12 6.48 6.19 -2.91 -0.02 6.46 16 27 H 0.41 17.48 8.03 -92.71 -0.74 16.73 16 28 H 0.28 15.11 8.29 -92.71 -0.77 14.34 16 29 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 32 H 0.18 3.46 4.51 -2.91 -0.01 3.45 16 Total: -1.00 -77.74 294.79 3.80 -73.94 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.44 Total: 24.64 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: 4.64 Total: 5.23 kcal Atomic # 7 Polarization: -81.77 SS G_CDS: -1.29 Total: -83.06 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -1.95 Total: -60.92 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.07 kcal Total: -77.74 3.80 -73.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629756240.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.051 kcal (2) G-P(sol) polarization free energy of solvation -77.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds